HEADER MEMBRANE PROTEIN 28-NOV-06 2JAF TITLE GROUND STATE OF HALORHODOPSIN T203V COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM (STRAIN ATCC 29341 / SOURCE 3 DSM 671 / R1); SOURCE 4 ORGANISM_TAXID: 478009; SOURCE 5 GENE: HOP, OE_1299R; SOURCE 6 EXPRESSION_SYSTEM: HALOBACTERIUM SALINARUM (STRAIN ATCC 29341 / DSM SOURCE 7 671 / R1); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 478009; SOURCE 9 OTHER_DETAILS: DSM 671 KEYWDS CHROMOPHORE, CHLORIDE PUMP, ION TRANSPORT, MEMBRANE, CHLORIDE, KEYWDS 2 RECEPTOR, ION PUMP, TRANSPORT, SENSORY TRANSDUCTION, PHOTORECEPTOR KEYWDS 3 PROTEIN, TRANSMEMBRANE, RETINAL PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.GMELIN,K.ZETH,R.EFREMOV,J.HEBERLE,J.TITTOR,D.OESTERHELT REVDAT 8 20-NOV-24 2JAF 1 REMARK REVDAT 7 13-DEC-23 2JAF 1 HETSYN REVDAT 6 29-JUL-20 2JAF 1 COMPND REMARK HETNAM SITE REVDAT 5 22-MAY-19 2JAF 1 REMARK LINK REVDAT 4 21-NOV-18 2JAF 1 COMPND SOURCE JRNL DBREF REVDAT 4 2 1 SEQADV REVDAT 3 28-DEC-11 2JAF 1 JRNL REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2JAF 1 VERSN REVDAT 1 14-DEC-06 2JAF 0 JRNL AUTH W.GMELIN,K.ZETH,R.EFREMOV,J.HEBERLE,J.TITTOR,D.OESTERHELT JRNL TITL THE CRYSTAL STRUCTURE OF THE L1 INTERMEDIATE OF JRNL TITL 2 HALORHODOPSIN AT 1.9 ANGSTROMS RESOLUTION. JRNL REF PHOTOCHEM. PHOTOBIOL. V. 83 369 2007 JRNL REFN ISSN 0031-8655 JRNL PMID 17117890 JRNL DOI 10.1562/2006-06-23-RA-947 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.400 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34900 REMARK 3 B22 (A**2) : 1.34900 REMARK 3 B33 (A**2) : -2.69900 REMARK 3 B12 (A**2) : 0.03400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 76.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 3-10 HELIX DISTORTION BETWEEN LEU A 110 REMARK 3 AND ALA A 113. PI-BULGE BETWEEN ALA A 178 AND TRP A 183 DISRUPTS REMARK 3 HELIX E REMARK 4 REMARK 4 2JAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1290030649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1E12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED IN A CUBIC LIPID PHASE REMARK 280 MADE OF 58-62 W/V % 1-MONOOLEIN, 3.3 M KCL, 3.5 MG/ML HR AND 25 REMARK 280 MM TRIS/HCL, PH 7, R.T., LIPIDIC CUBIC PHASE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.23650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.27201 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.37900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.23650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.27201 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.37900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.23650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.27201 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.37900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.23650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.27201 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.37900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.23650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.27201 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.37900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.23650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.27201 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.37900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.54401 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 104.75800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.54401 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 104.75800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.54401 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 104.75800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.54401 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 104.75800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.54401 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 104.75800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.54401 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 104.75800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 94.47300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 47.23650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 81.81602 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 203 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 229 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 264 REMARK 465 GLN A 265 REMARK 465 THR A 266 REMARK 465 LEU A 267 REMARK 465 GLY A 268 REMARK 465 THR A 269 REMARK 465 MET A 270 REMARK 465 SER A 271 REMARK 465 SER A 272 REMARK 465 ASP A 273 REMARK 465 ASP A 274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 181 -104.42 -122.59 REMARK 500 ASN A 256 38.74 -142.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E12 RELATED DB: PDB REMARK 900 HALORHODOPSIN, A LIGHT-DRIVEN CHLORIDE PUMP REMARK 900 RELATED ID: 2JAG RELATED DB: PDB REMARK 900 GROUND STATE AND L1 INTERMEDIATE OF HALORHODOPSIN DBREF 2JAF A 1 274 UNP B0R2U4 BACH_HALS3 1 274 SEQADV 2JAF VAL A 203 UNP B0R2U4 THR 203 ENGINEERED MUTATION SEQADV 2JAF ALA A 229 UNP B0R2U4 VAL 229 ENGINEERED MUTATION SEQRES 1 A 274 MET SER ILE THR SER VAL PRO GLY VAL VAL ASP ALA GLY SEQRES 2 A 274 VAL LEU GLY ALA GLN SER ALA ALA ALA VAL ARG GLU ASN SEQRES 3 A 274 ALA LEU LEU SER SER SER LEU TRP VAL ASN VAL ALA LEU SEQRES 4 A 274 ALA GLY ILE ALA ILE LEU VAL PHE VAL TYR MET GLY ARG SEQRES 5 A 274 THR ILE ARG PRO GLY ARG PRO ARG LEU ILE TRP GLY ALA SEQRES 6 A 274 THR LEU MET ILE PRO LEU VAL SER ILE SER SER TYR LEU SEQRES 7 A 274 GLY LEU LEU SER GLY LEU THR VAL GLY MET ILE GLU MET SEQRES 8 A 274 PRO ALA GLY HIS ALA LEU ALA GLY GLU MET VAL ARG SER SEQRES 9 A 274 GLN TRP GLY ARG TYR LEU THR TRP ALA LEU SER THR PRO SEQRES 10 A 274 MET ILE LEU LEU ALA LEU GLY LEU LEU ALA ASP VAL ASP SEQRES 11 A 274 LEU GLY SER LEU PHE THR VAL ILE ALA ALA ASP ILE GLY SEQRES 12 A 274 MET CYS VAL THR GLY LEU ALA ALA ALA MET THR THR SER SEQRES 13 A 274 ALA LEU LEU PHE ARG TRP ALA PHE TYR ALA ILE SER CYS SEQRES 14 A 274 ALA PHE PHE VAL VAL VAL LEU SER ALA LEU VAL THR ASP SEQRES 15 A 274 TRP ALA ALA SER ALA SER SER ALA GLY THR ALA GLU ILE SEQRES 16 A 274 PHE ASP THR LEU ARG VAL LEU VAL VAL VAL LEU TRP LEU SEQRES 17 A 274 GLY TYR PRO ILE VAL TRP ALA VAL GLY VAL GLU GLY LEU SEQRES 18 A 274 ALA LEU VAL GLN SER VAL GLY ALA THR SER TRP ALA TYR SEQRES 19 A 274 SER VAL LEU ASP VAL PHE ALA LYS TYR VAL PHE ALA PHE SEQRES 20 A 274 ILE LEU LEU ARG TRP VAL ALA ASN ASN GLU ARG THR VAL SEQRES 21 A 274 ALA VAL ALA GLY GLN THR LEU GLY THR MET SER SER ASP SEQRES 22 A 274 ASP HET CL A 501 1 HET CL A 502 1 HET PLM A 700 18 HET PLM A 701 18 HET BOG A 801 20 HET RET A 900 20 HETNAM CL CHLORIDE ION HETNAM PLM PALMITIC ACID HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM RET RETINAL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 2 CL 2(CL 1-) FORMUL 4 PLM 2(C16 H32 O2) FORMUL 6 BOG C14 H28 O6 FORMUL 7 RET C20 H28 O FORMUL 8 HOH *67(H2 O) HELIX 1 1 ASN A 26 GLY A 51 1 26 HELIX 2 2 GLY A 57 SER A 82 1 26 HELIX 3 3 GLN A 105 ASP A 128 1 24 HELIX 4 4 ASP A 130 THR A 154 1 25 HELIX 5 5 ALA A 157 THR A 181 1 25 HELIX 6 6 THR A 181 ALA A 190 1 10 HELIX 7 7 THR A 192 GLY A 217 1 26 HELIX 8 8 SER A 226 LYS A 242 1 17 HELIX 9 9 LYS A 242 ASN A 256 1 15 HELIX 10 10 ASN A 256 VAL A 262 1 7 SHEET 1 AA 2 GLY A 87 GLU A 90 0 SHEET 2 AA 2 MET A 101 SER A 104 -1 O VAL A 102 N ILE A 89 LINK NZ LYS A 242 C15 RET A 900 1555 1555 1.30 CRYST1 94.473 94.473 157.137 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010585 0.006111 0.000000 0.00000 SCALE2 0.000000 0.012223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006364 0.00000