data_2JAW # _entry.id 2JAW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JAW PDBE EBI-30686 WWPDB D_1290030686 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1MH9 unspecified 'CRYSTAL STRUCTURE ANALYSIS OF DEOXYRIBONUCLEOTIDASE' PDB 1Q91 unspecified 'CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH THE INHIBITOR DPB-T' PDB 1Q92 unspecified 'CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH THE INHIBITOR PMCP-U' PDB 1Z4I unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH DEOXYRIBOURIDINE 5'-MONOPHOSPHATE ; PDB 1Z4J unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH URIDINE 2'-MONOPHOSPHATE ; PDB 1Z4K unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH THYMIDINE 3'-MONOPHOSPHATE ; PDB 1Z4L unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH THYMIDINE 5'-MONOPHOSPHATE ; PDB 1Z4M unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH URIDINE 5'-MONOPHOSPHATE ; PDB 1Z4P unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH DEOXYRIBOGUANOSINE5'-MONOPHOSPHATE ; PDB 1Z4Q unspecified ;STRUCTURE OF THE D41N VARIANT OF THE HUMAN MITOCHONDRIALDEOXYRIBONUCLEOTIDASE IN COMPLEX WITH 2',3'-DIDEOXY-2',3-DIDEHYDROTHYMIDINE 5'-MONOPHOSPHATE (D4T-MP) ; PDB 2JAU unspecified ;CRYSTAL STRUCTURE OF D41N VARIANT OF HUMAN MITOCHONDRIAL 5'(3')-DEOXYRIBONUCLEOTIDASE (MDN ) IN COMPLEX WITH 3'-AZIDOTHYMIDINE 5'- MONOPHOSPHATE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JAW _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-11-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wallden, K.' 1 'Ruzzenente, B.' 2 'Bianchi, V.' 3 'Nordlund, P.' 4 # _citation.id primary _citation.title 'Crystal Structures of Human and Murine Deoxyribonucleotidases: Insights Into Recognition of Substrates and Nucleotide Analogues.' _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 13809 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17985935 _citation.pdbx_database_id_DOI 10.1021/BI7014794 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wallden, K.' 1 ? primary 'Rinaldo-Matthis, A.' 2 ? primary 'Ruzzenente, B.' 3 ? primary 'Rampazzo, C.' 4 ? primary 'Bianchi, V.' 5 ? primary 'Nordlund, P.' 6 ? # _cell.entry_id 2JAW _cell.length_a 73.604 _cell.length_b 73.604 _cell.length_c 106.374 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAW _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man "5'(3')-DEOXYRIBONUCLEOTIDASE" 22840.135 1 3.1.3.- YES 'RESIDUES 32-228' ? 2 non-polymer syn "(E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 413.115 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 172 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;5', 3'-NUCLEOTIDASE, MITOCHONDRIAL, MITOCHONDRIAL DEOXYRIBONUCLEOTIDASE, DEOXY-5'-NUCLEOTIDASE 2 , DNT-2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGRALRVLVNMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGRALRVLVNMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ARG n 1 4 ALA n 1 5 LEU n 1 6 ARG n 1 7 VAL n 1 8 LEU n 1 9 VAL n 1 10 ASN n 1 11 MET n 1 12 ASP n 1 13 GLY n 1 14 VAL n 1 15 LEU n 1 16 ALA n 1 17 ASP n 1 18 PHE n 1 19 GLU n 1 20 GLY n 1 21 GLY n 1 22 PHE n 1 23 LEU n 1 24 ARG n 1 25 LYS n 1 26 PHE n 1 27 ARG n 1 28 ALA n 1 29 ARG n 1 30 PHE n 1 31 PRO n 1 32 ASP n 1 33 GLN n 1 34 PRO n 1 35 PHE n 1 36 ILE n 1 37 ALA n 1 38 LEU n 1 39 GLU n 1 40 ASP n 1 41 ARG n 1 42 ARG n 1 43 GLY n 1 44 PHE n 1 45 TRP n 1 46 VAL n 1 47 SER n 1 48 GLU n 1 49 GLN n 1 50 TYR n 1 51 GLY n 1 52 ARG n 1 53 LEU n 1 54 ARG n 1 55 PRO n 1 56 GLY n 1 57 LEU n 1 58 SER n 1 59 GLU n 1 60 LYS n 1 61 ALA n 1 62 ILE n 1 63 SER n 1 64 ILE n 1 65 TRP n 1 66 GLU n 1 67 SER n 1 68 LYS n 1 69 ASN n 1 70 PHE n 1 71 PHE n 1 72 PHE n 1 73 GLU n 1 74 LEU n 1 75 GLU n 1 76 PRO n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 ALA n 1 81 VAL n 1 82 GLU n 1 83 ALA n 1 84 VAL n 1 85 LYS n 1 86 GLU n 1 87 MET n 1 88 ALA n 1 89 SER n 1 90 LEU n 1 91 GLN n 1 92 ASN n 1 93 THR n 1 94 ASP n 1 95 VAL n 1 96 PHE n 1 97 ILE n 1 98 CYS n 1 99 THR n 1 100 SER n 1 101 PRO n 1 102 ILE n 1 103 LYS n 1 104 MET n 1 105 PHE n 1 106 LYS n 1 107 TYR n 1 108 CYS n 1 109 PRO n 1 110 TYR n 1 111 GLU n 1 112 LYS n 1 113 TYR n 1 114 ALA n 1 115 TRP n 1 116 VAL n 1 117 GLU n 1 118 LYS n 1 119 TYR n 1 120 PHE n 1 121 GLY n 1 122 PRO n 1 123 ASP n 1 124 PHE n 1 125 LEU n 1 126 GLU n 1 127 GLN n 1 128 ILE n 1 129 VAL n 1 130 LEU n 1 131 THR n 1 132 ARG n 1 133 ASP n 1 134 LYS n 1 135 THR n 1 136 VAL n 1 137 VAL n 1 138 SER n 1 139 ALA n 1 140 ASP n 1 141 LEU n 1 142 LEU n 1 143 ILE n 1 144 ASP n 1 145 ASP n 1 146 ARG n 1 147 PRO n 1 148 ASP n 1 149 ILE n 1 150 THR n 1 151 GLY n 1 152 ALA n 1 153 GLU n 1 154 PRO n 1 155 THR n 1 156 PRO n 1 157 SER n 1 158 TRP n 1 159 GLU n 1 160 HIS n 1 161 VAL n 1 162 LEU n 1 163 PHE n 1 164 THR n 1 165 ALA n 1 166 CYS n 1 167 HIS n 1 168 ASN n 1 169 GLN n 1 170 HIS n 1 171 LEU n 1 172 GLN n 1 173 LEU n 1 174 GLN n 1 175 PRO n 1 176 PRO n 1 177 ARG n 1 178 ARG n 1 179 ARG n 1 180 LEU n 1 181 HIS n 1 182 SER n 1 183 TRP n 1 184 ALA n 1 185 ASP n 1 186 ASP n 1 187 TRP n 1 188 LYS n 1 189 ALA n 1 190 ILE n 1 191 LEU n 1 192 ASP n 1 193 SER n 1 194 LYS n 1 195 ARG n 1 196 PRO n 1 197 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET20B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NT5M_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9NPB1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JAW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NPB1 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 228 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 228 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2JAW _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 10 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9NPB1 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 41 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 41 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BVP 'DNA linking' n "(E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" BVDU-MP 'C11 H14 Br N2 O8 P' 413.115 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JAW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.2 _exptl_crystal.density_percent_sol 61.6 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG8000, 0.050 M POTASSIUM DIHYDROGEN PHOSPHATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-01-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.81150 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.81150 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JAW _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 1.95 _reflns.number_obs 21939 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.80 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JAW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 2079 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 60.86 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1122 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 24.08 _refine.aniso_B[1][1] -0.23000 _refine.aniso_B[2][2] -0.23000 _refine.aniso_B[3][3] 0.46000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.126 _refine.overall_SU_ML 0.080 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.717 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1599 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 1796 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 60.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1676 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.426 1.976 ? 2278 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.938 5.000 ? 193 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.496 22.892 ? 83 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.899 15.000 ? 275 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.664 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.102 0.200 ? 237 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1299 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.201 0.200 ? 752 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.314 0.200 ? 1142 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.158 0.200 ? 151 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.189 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.126 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.880 1.500 ? 1000 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.530 2.000 ? 1580 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.440 3.000 ? 782 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.903 4.500 ? 698 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 1510 _refine_ls_shell.R_factor_R_work 0.1960 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2620 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JAW _struct.title ;Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdN) in complex with 5-bromovinyldeoxyuridine 5'-monophosphate ; _struct.pdbx_descriptor ;5'(3')-DEOXYRIBONUCLEOTIDASE (E.C.3.1.3.-) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JAW _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;TRANSIT PEPTIDE, NUCLEOTIDE-BINDING, MITOCHONDRIAL, METAL-BINDING, ALFA BETA FOLD, NUCLEOTIDE- BINDING, NUCLEOTIDE METABOLISM, HYDROLASE, MAGNESIUM, MITOCHONDRION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? PHE A 30 ? ASP A 48 PHE A 61 1 ? 14 HELX_P HELX_P2 2 ALA A 37 ? ARG A 41 ? ALA A 68 ARG A 72 5 ? 5 HELX_P HELX_P3 3 TRP A 45 ? ARG A 54 ? TRP A 76 ARG A 85 1 ? 10 HELX_P HELX_P4 4 GLY A 56 ? GLU A 66 ? GLY A 87 GLU A 97 1 ? 11 HELX_P HELX_P5 5 GLY A 79 ? LEU A 90 ? GLY A 110 LEU A 121 1 ? 12 HELX_P HELX_P6 6 TYR A 107 ? GLY A 121 ? TYR A 138 GLY A 152 1 ? 15 HELX_P HELX_P7 7 PRO A 122 ? GLU A 126 ? PRO A 153 GLU A 157 5 ? 5 HELX_P HELX_P8 8 ASP A 186 ? ARG A 195 ? ASP A 217 ARG A 226 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C MG . MG ? ? ? 1_555 A ALA 88 O ? ? A MG 1229 A ALA 119 1_555 ? ? ? ? ? ? ? 2.364 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 A THR 93 O ? ? A MG 1229 A THR 124 1_555 ? ? ? ? ? ? ? 2.335 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1229 A HOH 2078 1_555 ? ? ? ? ? ? ? 2.466 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 A LEU 90 O ? ? A MG 1229 A LEU 121 1_555 ? ? ? ? ? ? ? 2.413 ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1229 A HOH 2075 1_555 ? ? ? ? ? ? ? 2.257 ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1230 A HOH 2167 1_555 ? ? ? ? ? ? ? 2.117 ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 A ASP 145 OD1 ? ? A MG 1230 A ASP 176 1_555 ? ? ? ? ? ? ? 2.133 ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1230 A HOH 2168 1_555 ? ? ? ? ? ? ? 2.145 ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 A ASP 12 O ? ? A MG 1230 A ASP 43 1_555 ? ? ? ? ? ? ? 2.014 ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 B BVP . O2P A ? A MG 1230 A BVP 1228 1_555 ? ? ? ? ? ? ? 1.916 ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 B BVP . O1P B ? A MG 1230 A BVP 1228 1_555 ? ? ? ? ? ? ? 2.131 ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 A ASN 10 OD1 ? ? A MG 1230 A ASN 41 1_555 ? ? ? ? ? ? ? 2.005 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 128 ? LEU A 130 ? ILE A 159 LEU A 161 AA 2 THR A 93 ? THR A 99 ? THR A 124 THR A 130 AA 3 LEU A 5 ? VAL A 9 ? LEU A 36 VAL A 40 AA 4 LEU A 141 ? ASP A 144 ? LEU A 172 ASP A 175 AA 5 GLU A 159 ? PHE A 163 ? GLU A 190 PHE A 194 AA 6 ARG A 178 ? LEU A 180 ? ARG A 209 LEU A 211 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 129 ? N VAL A 160 O ILE A 97 ? O ILE A 128 AA 2 3 N ASP A 94 ? N ASP A 125 O LEU A 5 ? O LEU A 36 AA 3 4 N LEU A 8 ? N LEU A 39 O LEU A 141 ? O LEU A 172 AA 4 5 N LEU A 142 ? N LEU A 173 O GLU A 159 ? O GLU A 190 AA 5 6 N LEU A 162 ? N LEU A 193 O ARG A 178 ? O ARG A 209 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 21 'BINDING SITE FOR RESIDUE BVP A1228' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A1229' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A1230' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ASN A 10 ? ASN A 41 . ? 1_555 ? 2 AC1 21 MET A 11 ? MET A 42 . ? 1_555 ? 3 AC1 21 ASP A 12 ? ASP A 43 . ? 1_555 ? 4 AC1 21 PHE A 18 ? PHE A 49 . ? 1_555 ? 5 AC1 21 TRP A 45 ? TRP A 76 . ? 1_555 ? 6 AC1 21 VAL A 46 ? VAL A 77 . ? 1_555 ? 7 AC1 21 SER A 47 ? SER A 78 . ? 1_555 ? 8 AC1 21 TRP A 65 ? TRP A 96 . ? 1_555 ? 9 AC1 21 THR A 99 ? THR A 130 . ? 1_555 ? 10 AC1 21 SER A 100 ? SER A 131 . ? 1_555 ? 11 AC1 21 PRO A 101 ? PRO A 132 . ? 1_555 ? 12 AC1 21 ILE A 102 ? ILE A 133 . ? 1_555 ? 13 AC1 21 LYS A 112 ? LYS A 143 . ? 1_555 ? 14 AC1 21 LYS A 134 ? LYS A 165 . ? 1_555 ? 15 AC1 21 MG D . ? MG A 1230 . ? 1_555 ? 16 AC1 21 HOH E . ? HOH A 2167 . ? 1_555 ? 17 AC1 21 HOH E . ? HOH A 2168 . ? 1_555 ? 18 AC1 21 HOH E . ? HOH A 2169 . ? 1_555 ? 19 AC1 21 HOH E . ? HOH A 2170 . ? 1_555 ? 20 AC1 21 HOH E . ? HOH A 2171 . ? 1_555 ? 21 AC1 21 HOH E . ? HOH A 2172 . ? 1_555 ? 22 AC2 6 ALA A 88 ? ALA A 119 . ? 1_555 ? 23 AC2 6 LEU A 90 ? LEU A 121 . ? 1_555 ? 24 AC2 6 THR A 93 ? THR A 124 . ? 1_555 ? 25 AC2 6 HOH E . ? HOH A 2075 . ? 1_555 ? 26 AC2 6 HOH E . ? HOH A 2078 . ? 1_555 ? 27 AC2 6 HOH E . ? HOH A 2079 . ? 1_555 ? 28 AC3 6 ASN A 10 ? ASN A 41 . ? 1_555 ? 29 AC3 6 ASP A 12 ? ASP A 43 . ? 1_555 ? 30 AC3 6 ASP A 145 ? ASP A 176 . ? 1_555 ? 31 AC3 6 BVP B . ? BVP A 1228 . ? 1_555 ? 32 AC3 6 HOH E . ? HOH A 2167 . ? 1_555 ? 33 AC3 6 HOH E . ? HOH A 2168 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JAW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JAW _atom_sites.fract_transf_matrix[1][1] 0.013586 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013586 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009401 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 32 ? ? ? A . n A 1 2 GLY 2 33 ? ? ? A . n A 1 3 ARG 3 34 34 ARG ARG A . n A 1 4 ALA 4 35 35 ALA ALA A . n A 1 5 LEU 5 36 36 LEU LEU A . n A 1 6 ARG 6 37 37 ARG ARG A . n A 1 7 VAL 7 38 38 VAL VAL A . n A 1 8 LEU 8 39 39 LEU LEU A . n A 1 9 VAL 9 40 40 VAL VAL A . n A 1 10 ASN 10 41 41 ASN ASN A . n A 1 11 MET 11 42 42 MET MET A . n A 1 12 ASP 12 43 43 ASP ASP A . n A 1 13 GLY 13 44 44 GLY GLY A . n A 1 14 VAL 14 45 45 VAL VAL A . n A 1 15 LEU 15 46 46 LEU LEU A . n A 1 16 ALA 16 47 47 ALA ALA A . n A 1 17 ASP 17 48 48 ASP ASP A . n A 1 18 PHE 18 49 49 PHE PHE A . n A 1 19 GLU 19 50 50 GLU GLU A . n A 1 20 GLY 20 51 51 GLY GLY A . n A 1 21 GLY 21 52 52 GLY GLY A . n A 1 22 PHE 22 53 53 PHE PHE A . n A 1 23 LEU 23 54 54 LEU LEU A . n A 1 24 ARG 24 55 55 ARG ARG A . n A 1 25 LYS 25 56 56 LYS LYS A . n A 1 26 PHE 26 57 57 PHE PHE A . n A 1 27 ARG 27 58 58 ARG ARG A . n A 1 28 ALA 28 59 59 ALA ALA A . n A 1 29 ARG 29 60 60 ARG ARG A . n A 1 30 PHE 30 61 61 PHE PHE A . n A 1 31 PRO 31 62 62 PRO PRO A . n A 1 32 ASP 32 63 63 ASP ASP A . n A 1 33 GLN 33 64 64 GLN GLN A . n A 1 34 PRO 34 65 65 PRO PRO A . n A 1 35 PHE 35 66 66 PHE PHE A . n A 1 36 ILE 36 67 67 ILE ILE A . n A 1 37 ALA 37 68 68 ALA ALA A . n A 1 38 LEU 38 69 69 LEU LEU A . n A 1 39 GLU 39 70 70 GLU GLU A . n A 1 40 ASP 40 71 71 ASP ASP A . n A 1 41 ARG 41 72 72 ARG ARG A . n A 1 42 ARG 42 73 73 ARG ARG A . n A 1 43 GLY 43 74 74 GLY GLY A . n A 1 44 PHE 44 75 75 PHE PHE A . n A 1 45 TRP 45 76 76 TRP TRP A . n A 1 46 VAL 46 77 77 VAL VAL A . n A 1 47 SER 47 78 78 SER SER A . n A 1 48 GLU 48 79 79 GLU GLU A . n A 1 49 GLN 49 80 80 GLN GLN A . n A 1 50 TYR 50 81 81 TYR TYR A . n A 1 51 GLY 51 82 82 GLY GLY A . n A 1 52 ARG 52 83 83 ARG ARG A . n A 1 53 LEU 53 84 84 LEU LEU A . n A 1 54 ARG 54 85 85 ARG ARG A . n A 1 55 PRO 55 86 86 PRO PRO A . n A 1 56 GLY 56 87 87 GLY GLY A . n A 1 57 LEU 57 88 88 LEU LEU A . n A 1 58 SER 58 89 89 SER SER A . n A 1 59 GLU 59 90 90 GLU GLU A . n A 1 60 LYS 60 91 91 LYS LYS A . n A 1 61 ALA 61 92 92 ALA ALA A . n A 1 62 ILE 62 93 93 ILE ILE A . n A 1 63 SER 63 94 94 SER SER A . n A 1 64 ILE 64 95 95 ILE ILE A . n A 1 65 TRP 65 96 96 TRP TRP A . n A 1 66 GLU 66 97 97 GLU GLU A . n A 1 67 SER 67 98 98 SER SER A . n A 1 68 LYS 68 99 99 LYS LYS A . n A 1 69 ASN 69 100 100 ASN ASN A . n A 1 70 PHE 70 101 101 PHE PHE A . n A 1 71 PHE 71 102 102 PHE PHE A . n A 1 72 PHE 72 103 103 PHE PHE A . n A 1 73 GLU 73 104 104 GLU GLU A . n A 1 74 LEU 74 105 105 LEU LEU A . n A 1 75 GLU 75 106 106 GLU GLU A . n A 1 76 PRO 76 107 107 PRO PRO A . n A 1 77 LEU 77 108 108 LEU LEU A . n A 1 78 PRO 78 109 109 PRO PRO A . n A 1 79 GLY 79 110 110 GLY GLY A . n A 1 80 ALA 80 111 111 ALA ALA A . n A 1 81 VAL 81 112 112 VAL VAL A . n A 1 82 GLU 82 113 113 GLU GLU A . n A 1 83 ALA 83 114 114 ALA ALA A . n A 1 84 VAL 84 115 115 VAL VAL A . n A 1 85 LYS 85 116 116 LYS LYS A . n A 1 86 GLU 86 117 117 GLU GLU A . n A 1 87 MET 87 118 118 MET MET A . n A 1 88 ALA 88 119 119 ALA ALA A . n A 1 89 SER 89 120 120 SER SER A . n A 1 90 LEU 90 121 121 LEU LEU A . n A 1 91 GLN 91 122 122 GLN GLN A . n A 1 92 ASN 92 123 123 ASN ASN A . n A 1 93 THR 93 124 124 THR THR A . n A 1 94 ASP 94 125 125 ASP ASP A . n A 1 95 VAL 95 126 126 VAL VAL A . n A 1 96 PHE 96 127 127 PHE PHE A . n A 1 97 ILE 97 128 128 ILE ILE A . n A 1 98 CYS 98 129 129 CYS CYS A . n A 1 99 THR 99 130 130 THR THR A . n A 1 100 SER 100 131 131 SER SER A . n A 1 101 PRO 101 132 132 PRO PRO A . n A 1 102 ILE 102 133 133 ILE ILE A . n A 1 103 LYS 103 134 134 LYS LYS A . n A 1 104 MET 104 135 135 MET MET A . n A 1 105 PHE 105 136 136 PHE PHE A . n A 1 106 LYS 106 137 137 LYS LYS A . n A 1 107 TYR 107 138 138 TYR TYR A . n A 1 108 CYS 108 139 139 CYS CYS A . n A 1 109 PRO 109 140 140 PRO PRO A . n A 1 110 TYR 110 141 141 TYR TYR A . n A 1 111 GLU 111 142 142 GLU GLU A . n A 1 112 LYS 112 143 143 LYS LYS A . n A 1 113 TYR 113 144 144 TYR TYR A . n A 1 114 ALA 114 145 145 ALA ALA A . n A 1 115 TRP 115 146 146 TRP TRP A . n A 1 116 VAL 116 147 147 VAL VAL A . n A 1 117 GLU 117 148 148 GLU GLU A . n A 1 118 LYS 118 149 149 LYS LYS A . n A 1 119 TYR 119 150 150 TYR TYR A . n A 1 120 PHE 120 151 151 PHE PHE A . n A 1 121 GLY 121 152 152 GLY GLY A . n A 1 122 PRO 122 153 153 PRO PRO A . n A 1 123 ASP 123 154 154 ASP ASP A . n A 1 124 PHE 124 155 155 PHE PHE A . n A 1 125 LEU 125 156 156 LEU LEU A . n A 1 126 GLU 126 157 157 GLU GLU A . n A 1 127 GLN 127 158 158 GLN GLN A . n A 1 128 ILE 128 159 159 ILE ILE A . n A 1 129 VAL 129 160 160 VAL VAL A . n A 1 130 LEU 130 161 161 LEU LEU A . n A 1 131 THR 131 162 162 THR THR A . n A 1 132 ARG 132 163 163 ARG ARG A . n A 1 133 ASP 133 164 164 ASP ASP A . n A 1 134 LYS 134 165 165 LYS LYS A . n A 1 135 THR 135 166 166 THR THR A . n A 1 136 VAL 136 167 167 VAL VAL A . n A 1 137 VAL 137 168 168 VAL VAL A . n A 1 138 SER 138 169 169 SER SER A . n A 1 139 ALA 139 170 170 ALA ALA A . n A 1 140 ASP 140 171 171 ASP ASP A . n A 1 141 LEU 141 172 172 LEU LEU A . n A 1 142 LEU 142 173 173 LEU LEU A . n A 1 143 ILE 143 174 174 ILE ILE A . n A 1 144 ASP 144 175 175 ASP ASP A . n A 1 145 ASP 145 176 176 ASP ASP A . n A 1 146 ARG 146 177 177 ARG ARG A . n A 1 147 PRO 147 178 178 PRO PRO A . n A 1 148 ASP 148 179 179 ASP ASP A . n A 1 149 ILE 149 180 180 ILE ILE A . n A 1 150 THR 150 181 181 THR THR A . n A 1 151 GLY 151 182 182 GLY GLY A . n A 1 152 ALA 152 183 183 ALA ALA A . n A 1 153 GLU 153 184 184 GLU GLU A . n A 1 154 PRO 154 185 185 PRO PRO A . n A 1 155 THR 155 186 186 THR THR A . n A 1 156 PRO 156 187 187 PRO PRO A . n A 1 157 SER 157 188 188 SER SER A . n A 1 158 TRP 158 189 189 TRP TRP A . n A 1 159 GLU 159 190 190 GLU GLU A . n A 1 160 HIS 160 191 191 HIS HIS A . n A 1 161 VAL 161 192 192 VAL VAL A . n A 1 162 LEU 162 193 193 LEU LEU A . n A 1 163 PHE 163 194 194 PHE PHE A . n A 1 164 THR 164 195 195 THR THR A . n A 1 165 ALA 165 196 196 ALA ALA A . n A 1 166 CYS 166 197 197 CYS CYS A . n A 1 167 HIS 167 198 198 HIS HIS A . n A 1 168 ASN 168 199 199 ASN ASN A . n A 1 169 GLN 169 200 200 GLN GLN A . n A 1 170 HIS 170 201 201 HIS HIS A . n A 1 171 LEU 171 202 202 LEU LEU A . n A 1 172 GLN 172 203 203 GLN GLN A . n A 1 173 LEU 173 204 204 LEU LEU A . n A 1 174 GLN 174 205 205 GLN GLN A . n A 1 175 PRO 175 206 206 PRO PRO A . n A 1 176 PRO 176 207 207 PRO PRO A . n A 1 177 ARG 177 208 208 ARG ARG A . n A 1 178 ARG 178 209 209 ARG ARG A . n A 1 179 ARG 179 210 210 ARG ARG A . n A 1 180 LEU 180 211 211 LEU LEU A . n A 1 181 HIS 181 212 212 HIS HIS A . n A 1 182 SER 182 213 213 SER SER A . n A 1 183 TRP 183 214 214 TRP TRP A . n A 1 184 ALA 184 215 215 ALA ALA A . n A 1 185 ASP 185 216 216 ASP ASP A . n A 1 186 ASP 186 217 217 ASP ASP A . n A 1 187 TRP 187 218 218 TRP TRP A . n A 1 188 LYS 188 219 219 LYS LYS A . n A 1 189 ALA 189 220 220 ALA ALA A . n A 1 190 ILE 190 221 221 ILE ILE A . n A 1 191 LEU 191 222 222 LEU LEU A . n A 1 192 ASP 192 223 223 ASP ASP A . n A 1 193 SER 193 224 224 SER SER A . n A 1 194 LYS 194 225 225 LYS LYS A . n A 1 195 ARG 195 226 226 ARG ARG A . n A 1 196 PRO 196 227 227 PRO PRO A . n A 1 197 CYS 197 228 228 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BVP 1 1228 1228 BVP BVP A . C 3 MG 1 1229 1229 MG MG A . D 3 MG 1 1230 1230 MG MG A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . E 4 HOH 72 2072 2072 HOH HOH A . E 4 HOH 73 2073 2073 HOH HOH A . E 4 HOH 74 2074 2074 HOH HOH A . E 4 HOH 75 2075 2075 HOH HOH A . E 4 HOH 76 2076 2076 HOH HOH A . E 4 HOH 77 2077 2077 HOH HOH A . E 4 HOH 78 2078 2078 HOH HOH A . E 4 HOH 79 2079 2079 HOH HOH A . E 4 HOH 80 2080 2080 HOH HOH A . E 4 HOH 81 2081 2081 HOH HOH A . E 4 HOH 82 2082 2082 HOH HOH A . E 4 HOH 83 2083 2083 HOH HOH A . E 4 HOH 84 2084 2084 HOH HOH A . E 4 HOH 85 2085 2085 HOH HOH A . E 4 HOH 86 2086 2086 HOH HOH A . E 4 HOH 87 2087 2087 HOH HOH A . E 4 HOH 88 2088 2088 HOH HOH A . E 4 HOH 89 2089 2089 HOH HOH A . E 4 HOH 90 2090 2090 HOH HOH A . E 4 HOH 91 2091 2091 HOH HOH A . E 4 HOH 92 2092 2092 HOH HOH A . E 4 HOH 93 2093 2093 HOH HOH A . E 4 HOH 94 2094 2094 HOH HOH A . E 4 HOH 95 2095 2095 HOH HOH A . E 4 HOH 96 2096 2096 HOH HOH A . E 4 HOH 97 2097 2097 HOH HOH A . E 4 HOH 98 2098 2098 HOH HOH A . E 4 HOH 99 2099 2099 HOH HOH A . E 4 HOH 100 2100 2100 HOH HOH A . E 4 HOH 101 2101 2101 HOH HOH A . E 4 HOH 102 2102 2102 HOH HOH A . E 4 HOH 103 2103 2103 HOH HOH A . E 4 HOH 104 2104 2104 HOH HOH A . E 4 HOH 105 2105 2105 HOH HOH A . E 4 HOH 106 2106 2106 HOH HOH A . E 4 HOH 107 2107 2107 HOH HOH A . E 4 HOH 108 2108 2108 HOH HOH A . E 4 HOH 109 2109 2109 HOH HOH A . E 4 HOH 110 2110 2110 HOH HOH A . E 4 HOH 111 2111 2111 HOH HOH A . E 4 HOH 112 2112 2112 HOH HOH A . E 4 HOH 113 2113 2113 HOH HOH A . E 4 HOH 114 2114 2114 HOH HOH A . E 4 HOH 115 2115 2115 HOH HOH A . E 4 HOH 116 2116 2116 HOH HOH A . E 4 HOH 117 2117 2117 HOH HOH A . E 4 HOH 118 2118 2118 HOH HOH A . E 4 HOH 119 2119 2119 HOH HOH A . E 4 HOH 120 2120 2120 HOH HOH A . E 4 HOH 121 2121 2121 HOH HOH A . E 4 HOH 122 2122 2122 HOH HOH A . E 4 HOH 123 2123 2123 HOH HOH A . E 4 HOH 124 2124 2124 HOH HOH A . E 4 HOH 125 2125 2125 HOH HOH A . E 4 HOH 126 2126 2126 HOH HOH A . E 4 HOH 127 2127 2127 HOH HOH A . E 4 HOH 128 2128 2128 HOH HOH A . E 4 HOH 129 2129 2129 HOH HOH A . E 4 HOH 130 2130 2130 HOH HOH A . E 4 HOH 131 2131 2131 HOH HOH A . E 4 HOH 132 2132 2132 HOH HOH A . E 4 HOH 133 2133 2133 HOH HOH A . E 4 HOH 134 2134 2134 HOH HOH A . E 4 HOH 135 2135 2135 HOH HOH A . E 4 HOH 136 2136 2136 HOH HOH A . E 4 HOH 137 2137 2137 HOH HOH A . E 4 HOH 138 2138 2138 HOH HOH A . E 4 HOH 139 2139 2139 HOH HOH A . E 4 HOH 140 2140 2140 HOH HOH A . E 4 HOH 141 2141 2141 HOH HOH A . E 4 HOH 142 2142 2142 HOH HOH A . E 4 HOH 143 2143 2143 HOH HOH A . E 4 HOH 144 2144 2144 HOH HOH A . E 4 HOH 145 2145 2145 HOH HOH A . E 4 HOH 146 2146 2146 HOH HOH A . E 4 HOH 147 2147 2147 HOH HOH A . E 4 HOH 148 2148 2148 HOH HOH A . E 4 HOH 149 2149 2149 HOH HOH A . E 4 HOH 150 2150 2150 HOH HOH A . E 4 HOH 151 2151 2151 HOH HOH A . E 4 HOH 152 2152 2152 HOH HOH A . E 4 HOH 153 2153 2153 HOH HOH A . E 4 HOH 154 2154 2154 HOH HOH A . E 4 HOH 155 2155 2155 HOH HOH A . E 4 HOH 156 2156 2156 HOH HOH A . E 4 HOH 157 2157 2157 HOH HOH A . E 4 HOH 158 2158 2158 HOH HOH A . E 4 HOH 159 2159 2159 HOH HOH A . E 4 HOH 160 2160 2160 HOH HOH A . E 4 HOH 161 2161 2161 HOH HOH A . E 4 HOH 162 2162 2162 HOH HOH A . E 4 HOH 163 2163 2163 HOH HOH A . E 4 HOH 164 2164 2164 HOH HOH A . E 4 HOH 165 2165 2165 HOH HOH A . E 4 HOH 166 2166 2166 HOH HOH A . E 4 HOH 167 2167 2167 HOH HOH A . E 4 HOH 168 2168 2168 HOH HOH A . E 4 HOH 169 2169 2169 HOH HOH A . E 4 HOH 170 2170 2170 HOH HOH A . E 4 HOH 171 2171 2171 HOH HOH A . E 4 HOH 172 2172 2172 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2610 ? 1 MORE -18.7 ? 1 'SSA (A^2)' 21550 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 73.6040000000 -1.0000000000 0.0000000000 0.0000000000 73.6040000000 0.0000000000 0.0000000000 -1.0000000000 53.1870000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ALA 88 ? A ALA 119 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? A THR 93 ? A THR 124 ? 1_555 102.9 ? 2 O ? A ALA 88 ? A ALA 119 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? E HOH . ? A HOH 2078 ? 1_555 168.0 ? 3 O ? A THR 93 ? A THR 124 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? E HOH . ? A HOH 2078 ? 1_555 79.2 ? 4 O ? A ALA 88 ? A ALA 119 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? A LEU 90 ? A LEU 121 ? 1_555 107.2 ? 5 O ? A THR 93 ? A THR 124 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? A LEU 90 ? A LEU 121 ? 1_555 100.9 ? 6 O ? E HOH . ? A HOH 2078 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? A LEU 90 ? A LEU 121 ? 1_555 83.8 ? 7 O ? A ALA 88 ? A ALA 119 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? E HOH . ? A HOH 2075 ? 1_555 87.5 ? 8 O ? A THR 93 ? A THR 124 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? E HOH . ? A HOH 2075 ? 1_555 157.6 ? 9 O ? E HOH . ? A HOH 2078 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? E HOH . ? A HOH 2075 ? 1_555 86.8 ? 10 O ? A LEU 90 ? A LEU 121 ? 1_555 MG ? C MG . ? A MG 1229 ? 1_555 O ? E HOH . ? A HOH 2075 ? 1_555 94.8 ? 11 O ? E HOH . ? A HOH 2167 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 87.2 ? 12 O ? E HOH . ? A HOH 2167 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O ? E HOH . ? A HOH 2168 ? 1_555 97.0 ? 13 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O ? E HOH . ? A HOH 2168 ? 1_555 82.8 ? 14 O ? E HOH . ? A HOH 2167 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O ? A ASP 12 ? A ASP 43 ? 1_555 84.1 ? 15 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O ? A ASP 12 ? A ASP 43 ? 1_555 90.8 ? 16 O ? E HOH . ? A HOH 2168 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O ? A ASP 12 ? A ASP 43 ? 1_555 173.5 ? 17 O ? E HOH . ? A HOH 2167 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O2P A B BVP . ? A BVP 1228 ? 1_555 84.0 ? 18 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O2P A B BVP . ? A BVP 1228 ? 1_555 157.1 ? 19 O ? E HOH . ? A HOH 2168 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O2P A B BVP . ? A BVP 1228 ? 1_555 77.3 ? 20 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O2P A B BVP . ? A BVP 1228 ? 1_555 109.3 ? 21 O ? E HOH . ? A HOH 2167 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O1P B B BVP . ? A BVP 1228 ? 1_555 88.4 ? 22 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O1P B B BVP . ? A BVP 1228 ? 1_555 175.6 ? 23 O ? E HOH . ? A HOH 2168 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O1P B B BVP . ? A BVP 1228 ? 1_555 98.3 ? 24 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O1P B B BVP . ? A BVP 1228 ? 1_555 88.1 ? 25 O2P A B BVP . ? A BVP 1228 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 O1P B B BVP . ? A BVP 1228 ? 1_555 22.2 ? 26 O ? E HOH . ? A HOH 2167 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASN 10 ? A ASN 41 ? 1_555 176.5 ? 27 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASN 10 ? A ASN 41 ? 1_555 91.3 ? 28 O ? E HOH . ? A HOH 2168 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASN 10 ? A ASN 41 ? 1_555 85.9 ? 29 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASN 10 ? A ASN 41 ? 1_555 92.7 ? 30 O2P A B BVP . ? A BVP 1228 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASN 10 ? A ASN 41 ? 1_555 98.5 ? 31 O1P B B BVP . ? A BVP 1228 ? 1_555 MG ? D MG . ? A MG 1230 ? 1_555 OD1 ? A ASN 10 ? A ASN 41 ? 1_555 93.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-01-30 5 'Structure model' 1 4 2019-02-06 6 'Structure model' 1 5 2019-07-10 7 'Structure model' 1 6 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Experimental preparation' 8 6 'Structure model' 'Data collection' 9 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 5 'Structure model' diffrn_source 5 5 'Structure model' exptl_crystal_grow 6 6 'Structure model' diffrn_source 7 7 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_exptl_crystal_grow.temp' 5 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 6 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2 ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? MOLREP phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2JAW _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, ASP 41 TO ASN' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;MIRLGGWCARRLCSAAVPAGRRGAAGGLGLAGGRALRVLVDMDGVLADFEGGFLRKFRAR FPDQPFIA ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 106 ? ? O A HOH 2063 ? ? 2.12 2 1 O A HOH 2141 ? ? O A HOH 2144 ? ? 2.13 3 1 O A HOH 2086 ? ? O A HOH 2087 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 37 ? ? CZ A ARG 37 ? ? NH1 A ARG 37 ? ? 123.64 120.30 3.34 0.50 N 2 1 NE A ARG 37 ? ? CZ A ARG 37 ? ? NH2 A ARG 37 ? ? 116.20 120.30 -4.10 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 42 ? ? -96.27 -72.12 2 1 VAL A 45 ? ? -130.93 -51.04 3 1 ASN A 100 ? ? 71.32 -1.26 4 1 SER A 213 ? ? 179.74 172.67 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A CYS 228 ? CA ? A CYS 197 CA 2 1 Y 1 A CYS 228 ? C ? A CYS 197 C 3 1 Y 1 A CYS 228 ? O ? A CYS 197 O 4 1 Y 1 A CYS 228 ? CB ? A CYS 197 CB 5 1 Y 1 A CYS 228 ? SG ? A CYS 197 SG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 32 ? A GLY 1 2 1 Y 1 A GLY 33 ? A GLY 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "(E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" BVP 3 'MAGNESIUM ION' MG 4 water HOH #