HEADER TRANSFERASE 19-DEC-06 2JC6 TITLE CRYSTAL STRUCTURE OF HUMAN CALMODULIN-DEPENDENT PROTEIN KINASE 1D COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE 1D; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 1-333; COMPND 5 SYNONYM: CALMODULIN-DEPENDENT PROTEIN KINASE 1D, CAM KINASE ID, CAM COMPND 6 KINASE I DELTA, CAMKI-DELTA, CAM-KI DELTA, CAMKI DELTA, CAMK1D, COMPND 7 CAMKI-LIKE PROTEIN KINASE, CKLIK; COMPND 8 EC: 2.7.11.17; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS TRANSFERASE, ATP-BINDING, NUCLEAR PROTEIN, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,P.RELLOS,O.FEDOROV,F.H.NIESEN,C.BHATIA,L.SHRESTHA, AUTHOR 2 E.SALAH,C.SMEE,S.COLEBROOK,G.BERRIDGE,O.GILEADI,G.BUNKOCZI, AUTHOR 3 E.UGOCHUKWU,A.C.W.PIKE,F.VON DELFT,S.KNAPP,M.SUNDSTROM,J.WEIGELT, AUTHOR 4 C.H.ARROWSMITH,A.EDWARDS REVDAT 6 13-DEC-23 2JC6 1 REMARK REVDAT 5 24-JAN-18 2JC6 1 JRNL REVDAT 4 13-JUL-11 2JC6 1 VERSN REVDAT 3 24-FEB-09 2JC6 1 VERSN REVDAT 2 27-FEB-07 2JC6 1 REMARK REVDAT 1 13-FEB-07 2JC6 0 JRNL AUTH J.E.DEBRECZENI,P.RELLOS,O.FEDOROV,F.H.NIESEN,C.BHATIA, JRNL AUTH 2 L.SHRESTHA,E.SALAH,C.SMEE,S.COLEBROOK,G.BERRIDGE,O.GILEADI, JRNL AUTH 3 G.BUNKOCZI,E.UGOCHUKWU,A.C.W.PIKE,F.VON DELFT,S.KNAPP, JRNL AUTH 4 M.SUNDSTROM,J.WEIGELT,C.H.ARROWSMITH,A.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF HUMAN CALMODULIN-DEPENDENT PROTEIN JRNL TITL 2 KINASE 1D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 28455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2276 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.019 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4549 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3044 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6169 ; 1.428 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7399 ; 0.917 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 9.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;39.540 ;24.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;17.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;23.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5064 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 920 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 848 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3012 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2158 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2360 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.106 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2906 ; 3.182 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4446 ; 4.339 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2014 ; 6.697 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1720 ; 8.199 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 222 4 REMARK 3 1 C 3 C 222 4 REMARK 3 2 A 233 A 313 4 REMARK 3 2 C 233 C 313 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3518 ; 0.25 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3518 ; 0.92 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1050 -74.7830 -29.4400 REMARK 3 T TENSOR REMARK 3 T11: -0.0407 T22: -0.0604 REMARK 3 T33: 0.0132 T12: -0.0858 REMARK 3 T13: -0.0001 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.9436 L22: 4.5535 REMARK 3 L33: 3.0623 L12: 2.2091 REMARK 3 L13: 0.7960 L23: 3.1370 REMARK 3 S TENSOR REMARK 3 S11: 0.2721 S12: -0.4393 S13: 0.3327 REMARK 3 S21: 0.3328 S22: -0.2817 S23: 0.2187 REMARK 3 S31: 0.0650 S32: -0.0917 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9070 -97.5720 -44.0830 REMARK 3 T TENSOR REMARK 3 T11: -0.1105 T22: -0.0597 REMARK 3 T33: -0.1080 T12: -0.0840 REMARK 3 T13: -0.0050 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.8026 L22: 1.1984 REMARK 3 L33: 1.1709 L12: -0.1550 REMARK 3 L13: -0.0472 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.1037 S12: -0.0897 S13: -0.0454 REMARK 3 S21: -0.0537 S22: -0.0507 S23: 0.0150 REMARK 3 S31: 0.0893 S32: 0.0229 S33: -0.0530 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6430 -56.1130 -20.5690 REMARK 3 T TENSOR REMARK 3 T11: -0.0498 T22: -0.0622 REMARK 3 T33: -0.1089 T12: -0.0744 REMARK 3 T13: -0.0237 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.6125 L22: 3.7722 REMARK 3 L33: 1.2921 L12: -0.5763 REMARK 3 L13: -0.3041 L23: 0.2431 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.0783 S13: -0.0785 REMARK 3 S21: 0.2252 S22: -0.0624 S23: 0.0902 REMARK 3 S31: 0.2036 S32: -0.0051 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 102 C 313 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7630 -30.2500 -12.1800 REMARK 3 T TENSOR REMARK 3 T11: -0.0835 T22: -0.0819 REMARK 3 T33: -0.0237 T12: -0.0870 REMARK 3 T13: -0.0023 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.8677 L22: 1.3741 REMARK 3 L33: 1.1104 L12: 0.1224 REMARK 3 L13: -0.0746 L23: 0.3920 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.2121 S13: 0.3470 REMARK 3 S21: -0.0035 S22: -0.0430 S23: 0.0224 REMARK 3 S31: -0.1585 S32: 0.0200 S33: -0.0548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : SI 1 1 1 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.470 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1A06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PH 5.6, 20% ISOPROPANOL, REMARK 280 20% PEG 4K. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.53000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 LEU A 59 REMARK 465 LYS A 60 REMARK 465 GLY A 61 REMARK 465 LYS A 62 REMARK 465 GLU A 63 REMARK 465 ASP A 165 REMARK 465 PHE A 166 REMARK 465 GLY A 167 REMARK 465 LEU A 168 REMARK 465 SER A 169 REMARK 465 LYS A 170 REMARK 465 MET A 171 REMARK 465 GLU A 172 REMARK 465 GLY A 173 REMARK 465 LYS A 174 REMARK 465 GLY A 175 REMARK 465 ASP A 176 REMARK 465 VAL A 177 REMARK 465 MET A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 ALA A 181 REMARK 465 CYS A 182 REMARK 465 GLY A 183 REMARK 465 THR A 184 REMARK 465 ALA A 314 REMARK 465 VAL A 315 REMARK 465 VAL A 316 REMARK 465 ARG A 317 REMARK 465 HIS A 318 REMARK 465 MET A 319 REMARK 465 ARG A 320 REMARK 465 LYS A 321 REMARK 465 LEU A 322 REMARK 465 HIS A 323 REMARK 465 LEU A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 LEU A 328 REMARK 465 ASP A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 ASN A 332 REMARK 465 ALA A 333 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 3 REMARK 465 GLU C 4 REMARK 465 ASN C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 SER C 9 REMARK 465 SER C 10 REMARK 465 LEU C 59 REMARK 465 LYS C 60 REMARK 465 GLY C 61 REMARK 465 LYS C 62 REMARK 465 GLU C 63 REMARK 465 SER C 64 REMARK 465 ASP C 165 REMARK 465 PHE C 166 REMARK 465 GLY C 167 REMARK 465 LEU C 168 REMARK 465 SER C 169 REMARK 465 LYS C 170 REMARK 465 MET C 171 REMARK 465 GLU C 172 REMARK 465 GLY C 173 REMARK 465 LYS C 174 REMARK 465 GLY C 175 REMARK 465 ASP C 176 REMARK 465 VAL C 177 REMARK 465 MET C 178 REMARK 465 SER C 179 REMARK 465 THR C 180 REMARK 465 ALA C 181 REMARK 465 CYS C 182 REMARK 465 GLY C 183 REMARK 465 THR C 184 REMARK 465 ALA C 314 REMARK 465 VAL C 315 REMARK 465 VAL C 316 REMARK 465 ARG C 317 REMARK 465 HIS C 318 REMARK 465 MET C 319 REMARK 465 ARG C 320 REMARK 465 LYS C 321 REMARK 465 LEU C 322 REMARK 465 HIS C 323 REMARK 465 LEU C 324 REMARK 465 GLY C 325 REMARK 465 SER C 326 REMARK 465 SER C 327 REMARK 465 LEU C 328 REMARK 465 ASP C 329 REMARK 465 SER C 330 REMARK 465 SER C 331 REMARK 465 ASN C 332 REMARK 465 ALA C 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 11 OG REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 26 NZ REMARK 470 PHE A 34 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ILE A 66 CG1 CG2 CD1 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 ASN A 68 CG OD1 ND2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ILE A 70 CG1 CG2 CD1 REMARK 470 VAL A 72 CG1 CG2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 GLN A 195 CG CD OE1 NE2 REMARK 470 ASP A 223 OD1 OD2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 235 CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 THR A 313 OG1 CG2 REMARK 470 SER C 11 OG REMARK 470 LYS C 20 CD CE NZ REMARK 470 LYS C 21 CG CD CE NZ REMARK 470 LYS C 26 NZ REMARK 470 PHE C 34 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 SER C 65 OG REMARK 470 GLU C 67 CG CD OE1 OE2 REMARK 470 ASN C 68 CG OD1 ND2 REMARK 470 GLU C 69 CD OE1 OE2 REMARK 470 VAL C 72 CG1 CG2 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 LYS C 77 CG CD CE NZ REMARK 470 ARG C 143 CZ NH1 NH2 REMARK 470 LYS C 146 NZ REMARK 470 GLN C 195 CG CD OE1 NE2 REMARK 470 GLU C 224 CG CD OE1 OE2 REMARK 470 ASN C 225 CG OD1 ND2 REMARK 470 GLU C 231 CD OE1 OE2 REMARK 470 LYS C 235 CG CD CE NZ REMARK 470 LYS C 305 CG CD CE NZ REMARK 470 THR C 313 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 242 OD1 ASP C 246 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 307 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 -130.29 -99.89 REMARK 500 LYS A 57 -9.28 -56.74 REMARK 500 SER A 65 -63.36 70.79 REMARK 500 ARG A 143 -5.89 73.74 REMARK 500 ASP A 144 33.36 -141.39 REMARK 500 GLU A 224 -69.76 -106.99 REMARK 500 PHE A 240 78.76 -56.38 REMARK 500 ALA A 312 -156.54 57.02 REMARK 500 LYS C 26 -126.15 -102.72 REMARK 500 LYS C 57 10.61 -63.29 REMARK 500 ARG C 143 -9.16 80.12 REMARK 500 ASP C 144 34.55 -141.81 REMARK 500 ALA C 194 18.31 -68.24 REMARK 500 CYS C 216 -22.32 -141.43 REMARK 500 PHE C 240 66.96 -31.27 REMARK 500 ALA C 312 -156.73 70.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 239 PHE A 240 120.92 REMARK 500 ASN A 311 ALA A 312 147.19 REMARK 500 GLU C 239 PHE C 240 106.15 REMARK 500 ASN C 311 ALA C 312 145.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QPP A1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QPP C1314 DBREF 2JC6 A 1 333 UNP Q8IU85 KCC1D_HUMAN 1 333 DBREF 2JC6 C 1 333 UNP Q8IU85 KCC1D_HUMAN 1 333 SEQADV 2JC6 SER A 0 UNP Q8IU85 EXPRESSION TAG SEQADV 2JC6 SER C 0 UNP Q8IU85 EXPRESSION TAG SEQRES 1 A 334 SER MET ALA ARG GLU ASN GLY GLU SER SER SER SER TRP SEQRES 2 A 334 LYS LYS GLN ALA GLU ASP ILE LYS LYS ILE PHE GLU PHE SEQRES 3 A 334 LYS GLU THR LEU GLY THR GLY ALA PHE SER GLU VAL VAL SEQRES 4 A 334 LEU ALA GLU GLU LYS ALA THR GLY LYS LEU PHE ALA VAL SEQRES 5 A 334 LYS CYS ILE PRO LYS LYS ALA LEU LYS GLY LYS GLU SER SEQRES 6 A 334 SER ILE GLU ASN GLU ILE ALA VAL LEU ARG LYS ILE LYS SEQRES 7 A 334 HIS GLU ASN ILE VAL ALA LEU GLU ASP ILE TYR GLU SER SEQRES 8 A 334 PRO ASN HIS LEU TYR LEU VAL MET GLN LEU VAL SER GLY SEQRES 9 A 334 GLY GLU LEU PHE ASP ARG ILE VAL GLU LYS GLY PHE TYR SEQRES 10 A 334 THR GLU LYS ASP ALA SER THR LEU ILE ARG GLN VAL LEU SEQRES 11 A 334 ASP ALA VAL TYR TYR LEU HIS ARG MET GLY ILE VAL HIS SEQRES 12 A 334 ARG ASP LEU LYS PRO GLU ASN LEU LEU TYR TYR SER GLN SEQRES 13 A 334 ASP GLU GLU SER LYS ILE MET ILE SER ASP PHE GLY LEU SEQRES 14 A 334 SER LYS MET GLU GLY LYS GLY ASP VAL MET SER THR ALA SEQRES 15 A 334 CYS GLY THR PRO GLY TYR VAL ALA PRO GLU VAL LEU ALA SEQRES 16 A 334 GLN LYS PRO TYR SER LYS ALA VAL ASP CYS TRP SER ILE SEQRES 17 A 334 GLY VAL ILE ALA TYR ILE LEU LEU CYS GLY TYR PRO PRO SEQRES 18 A 334 PHE TYR ASP GLU ASN ASP SER LYS LEU PHE GLU GLN ILE SEQRES 19 A 334 LEU LYS ALA GLU TYR GLU PHE ASP SER PRO TYR TRP ASP SEQRES 20 A 334 ASP ILE SER ASP SER ALA LYS ASP PHE ILE ARG ASN LEU SEQRES 21 A 334 MET GLU LYS ASP PRO ASN LYS ARG TYR THR CYS GLU GLN SEQRES 22 A 334 ALA ALA ARG HIS PRO TRP ILE ALA GLY ASP THR ALA LEU SEQRES 23 A 334 ASN LYS ASN ILE HIS GLU SER VAL SER ALA GLN ILE ARG SEQRES 24 A 334 LYS ASN PHE ALA LYS SER LYS TRP ARG GLN ALA PHE ASN SEQRES 25 A 334 ALA THR ALA VAL VAL ARG HIS MET ARG LYS LEU HIS LEU SEQRES 26 A 334 GLY SER SER LEU ASP SER SER ASN ALA SEQRES 1 C 334 SER MET ALA ARG GLU ASN GLY GLU SER SER SER SER TRP SEQRES 2 C 334 LYS LYS GLN ALA GLU ASP ILE LYS LYS ILE PHE GLU PHE SEQRES 3 C 334 LYS GLU THR LEU GLY THR GLY ALA PHE SER GLU VAL VAL SEQRES 4 C 334 LEU ALA GLU GLU LYS ALA THR GLY LYS LEU PHE ALA VAL SEQRES 5 C 334 LYS CYS ILE PRO LYS LYS ALA LEU LYS GLY LYS GLU SER SEQRES 6 C 334 SER ILE GLU ASN GLU ILE ALA VAL LEU ARG LYS ILE LYS SEQRES 7 C 334 HIS GLU ASN ILE VAL ALA LEU GLU ASP ILE TYR GLU SER SEQRES 8 C 334 PRO ASN HIS LEU TYR LEU VAL MET GLN LEU VAL SER GLY SEQRES 9 C 334 GLY GLU LEU PHE ASP ARG ILE VAL GLU LYS GLY PHE TYR SEQRES 10 C 334 THR GLU LYS ASP ALA SER THR LEU ILE ARG GLN VAL LEU SEQRES 11 C 334 ASP ALA VAL TYR TYR LEU HIS ARG MET GLY ILE VAL HIS SEQRES 12 C 334 ARG ASP LEU LYS PRO GLU ASN LEU LEU TYR TYR SER GLN SEQRES 13 C 334 ASP GLU GLU SER LYS ILE MET ILE SER ASP PHE GLY LEU SEQRES 14 C 334 SER LYS MET GLU GLY LYS GLY ASP VAL MET SER THR ALA SEQRES 15 C 334 CYS GLY THR PRO GLY TYR VAL ALA PRO GLU VAL LEU ALA SEQRES 16 C 334 GLN LYS PRO TYR SER LYS ALA VAL ASP CYS TRP SER ILE SEQRES 17 C 334 GLY VAL ILE ALA TYR ILE LEU LEU CYS GLY TYR PRO PRO SEQRES 18 C 334 PHE TYR ASP GLU ASN ASP SER LYS LEU PHE GLU GLN ILE SEQRES 19 C 334 LEU LYS ALA GLU TYR GLU PHE ASP SER PRO TYR TRP ASP SEQRES 20 C 334 ASP ILE SER ASP SER ALA LYS ASP PHE ILE ARG ASN LEU SEQRES 21 C 334 MET GLU LYS ASP PRO ASN LYS ARG TYR THR CYS GLU GLN SEQRES 22 C 334 ALA ALA ARG HIS PRO TRP ILE ALA GLY ASP THR ALA LEU SEQRES 23 C 334 ASN LYS ASN ILE HIS GLU SER VAL SER ALA GLN ILE ARG SEQRES 24 C 334 LYS ASN PHE ALA LYS SER LYS TRP ARG GLN ALA PHE ASN SEQRES 25 C 334 ALA THR ALA VAL VAL ARG HIS MET ARG LYS LEU HIS LEU SEQRES 26 C 334 GLY SER SER LEU ASP SER SER ASN ALA HET QPP A1314 23 HET QPP C1314 23 HETNAM QPP N-(5-METHYL-1H-PYRAZOL-3-YL)-2-PHENYLQUINAZOLIN-4-AMINE HETSYN QPP 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE FORMUL 3 QPP 2(C18 H15 N5) FORMUL 5 HOH *188(H2 O) HELIX 1 1 ASP A 18 ILE A 22 1 5 HELIX 2 2 SER A 65 ILE A 76 1 12 HELIX 3 3 GLU A 105 LYS A 113 1 9 HELIX 4 4 THR A 117 MET A 138 1 22 HELIX 5 5 LYS A 146 GLU A 148 5 3 HELIX 6 6 ALA A 189 ALA A 194 1 6 HELIX 7 7 LYS A 200 GLY A 217 1 18 HELIX 8 8 ASN A 225 ALA A 236 1 12 HELIX 9 9 SER A 249 MET A 260 1 12 HELIX 10 10 THR A 269 ALA A 274 1 6 HELIX 11 11 HIS A 276 GLY A 281 1 6 HELIX 12 12 ILE A 289 PHE A 301 1 13 HELIX 13 13 SER A 304 ALA A 312 1 9 HELIX 14 14 ASP C 18 ILE C 22 1 5 HELIX 15 15 SER C 65 ILE C 76 1 12 HELIX 16 16 GLU C 105 LYS C 113 1 9 HELIX 17 17 THR C 117 MET C 138 1 22 HELIX 18 18 LYS C 146 GLU C 148 5 3 HELIX 19 19 ALA C 189 ALA C 194 1 6 HELIX 20 20 LYS C 200 GLY C 217 1 18 HELIX 21 21 ASN C 225 LYS C 235 1 11 HELIX 22 22 SER C 249 MET C 260 1 12 HELIX 23 23 THR C 269 ARG C 275 1 7 HELIX 24 24 HIS C 276 GLY C 281 1 6 HELIX 25 25 ILE C 289 PHE C 301 1 13 HELIX 26 26 SER C 304 ALA C 312 1 9 SHEET 1 AA12 PHE A 23 THR A 31 0 SHEET 2 AA12 GLU A 36 GLU A 42 -1 O VAL A 37 N LEU A 29 SHEET 3 AA12 LEU A 48 PRO A 55 -1 O PHE A 49 N ALA A 40 SHEET 4 AA12 HIS A 93 GLN A 99 -1 O LEU A 94 N ILE A 54 SHEET 5 AA12 LEU A 84 GLU A 89 -1 N GLU A 85 O VAL A 97 SHEET 6 AA12 LYS C 13 GLN C 15 -1 O LYS C 13 N GLU A 89 SHEET 7 AA12 LYS A 13 GLN A 15 -1 O LYS A 14 N LYS C 14 SHEET 8 AA12 LEU C 84 GLU C 89 -1 O ILE C 87 N GLN A 15 SHEET 9 AA12 HIS C 93 GLN C 99 -1 O TYR C 95 N TYR C 88 SHEET 10 AA12 LEU C 48 PRO C 55 -1 O ALA C 50 N MET C 98 SHEET 11 AA12 GLU C 36 GLU C 42 -1 O GLU C 36 N CYS C 53 SHEET 12 AA12 PHE C 23 THR C 31 -1 O GLU C 24 N GLU C 41 SHEET 1 AB 2 LEU A 150 TYR A 152 0 SHEET 2 AB 2 ILE A 161 ILE A 163 -1 O MET A 162 N LEU A 151 SHEET 1 CA 2 LEU C 150 TYR C 152 0 SHEET 2 CA 2 ILE C 161 ILE C 163 -1 O MET C 162 N LEU C 151 CISPEP 1 SER A 242 PRO A 243 0 0.65 CISPEP 2 SER C 242 PRO C 243 0 5.76 SITE 1 AC1 7 LEU A 29 GLN A 99 LEU A 100 VAL A 101 SITE 2 AC1 7 TRP A 306 ALA A 309 HOH A2009 SITE 1 AC2 7 LEU C 29 GLN C 99 LEU C 100 VAL C 101 SITE 2 AC2 7 TRP C 306 ALA C 309 HOH C2010 CRYST1 39.640 93.060 101.860 90.00 96.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025227 0.000000 0.002723 0.00000 SCALE2 0.000000 0.010746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009874 0.00000 MTRIX1 1 -0.999990 0.004350 0.002470 -4.30173 1 MTRIX2 1 0.004670 -0.634780 -0.772680 -126.35943 1 MTRIX3 1 -0.001790 -0.772680 0.634790 -59.53677 1