HEADER METAL BINDING PROTEIN 04-JAN-07 2JD4 TITLE MOUSE LAMININ ALPHA1 CHAIN, DOMAINS LG4-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ SUBUNIT ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAINS LG4-5, RESIDUES 2706-3084; COMPND 5 SYNONYM: LAMININ ALPHA1 CHAIN, LAMININ A CHAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: 293-EBNA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PCEP-PU KEYWDS LAMININ-111, BASEMENT MEMBRANE PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.HARRISON,S.A.HUSSAIN,A.C.COMBS,J.M.ERVASTI,P.D.YURCHENCO, AUTHOR 2 E.HOHENESTER REVDAT 4 13-DEC-23 2JD4 1 LINK REVDAT 3 24-FEB-09 2JD4 1 VERSN REVDAT 2 17-APR-07 2JD4 1 JRNL REVDAT 1 27-FEB-07 2JD4 0 JRNL AUTH D.HARRISON,S.A.HUSSAIN,A.C.COMBS,J.M.ERVASTI,P.D.YURCHENCO, JRNL AUTH 2 E.HOHENESTER JRNL TITL CRYSTAL STRUCTURE AND CELL SURFACE ANCHORAGE SITES OF JRNL TITL 2 LAMININ {ALPHA}1LG4-5. JRNL REF J.BIOL.CHEM. V. 282 11573 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17307732 JRNL DOI 10.1074/JBC.M610657200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.TISI,J.F.TALTS,R.TIMPL,E.HOHENESTER REMARK 1 TITL STRUCTURE OF THE C-TERMINAL LAMININ G-LIKE DOMAIN PAIR OF REMARK 1 TITL 2 THE LAMININ ALPHA2 CHAIN HARBOURING BINDING SITES FOR REMARK 1 TITL 3 ALPHA-DYSTROGLYCAN AND HEPARIN REMARK 1 REF EMBO J. V. 19 1432 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 10747011 REMARK 1 DOI 10.1093/EMBOJ/19.7.1432 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.MINER,P.D.YURCHENCO REMARK 1 TITL LAMININ FUNCTIONS IN TISSUE MORPHOGENESIS REMARK 1 REF ANNU.REV.CELL DEV.BIOL. V. 20 255 2004 REMARK 1 REFN ISSN 1081-0706 REMARK 1 PMID 15473841 REMARK 1 DOI 10.1146/ANNUREV.CELLBIO.20.010403.094555 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 59670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3015 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1001 REMARK 3 BIN R VALUE (WORKING SET) : 0.3135 REMARK 3 BIN FREE R VALUE : 0.3434 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 51 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78800 REMARK 3 B22 (A**2) : 2.82800 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.56100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.354 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.960 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.460 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.700 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.760 ; 4.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 46.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1290030994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 156499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.90600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 2738 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 2835 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 2924 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 3038 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 2738 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 2835 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 2924 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 3038 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2987 REMARK 465 PRO A 2988 REMARK 465 HIS A 2989 REMARK 465 THR A 2990 REMARK 465 ARG A 3032 REMARK 465 GLY A 3033 REMARK 465 SER A 3034 REMARK 465 ALA B 2678 REMARK 465 PRO B 2679 REMARK 465 LEU B 2680 REMARK 465 ALA B 2681 REMARK 465 GLN B 2682 REMARK 465 PRO B 2683 REMARK 465 GLU B 2684 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A3060 CA C O CB CG CD REMARK 470 PRO B3060 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A2766 26.98 -142.24 REMARK 500 SER A2778 43.35 -74.17 REMARK 500 LYS A2791 -107.57 67.61 REMARK 500 ARG A2819 49.84 -72.42 REMARK 500 VAL A2889 70.98 62.53 REMARK 500 ARG A2896 -139.04 62.26 REMARK 500 LYS A2921 -105.94 -108.60 REMARK 500 LYS A2971 -86.28 -23.62 REMARK 500 ASN A2998 53.81 -165.61 REMARK 500 TYR A3006 146.64 -172.59 REMARK 500 HIS A3053 -3.10 74.98 REMARK 500 LEU B2713 71.55 -110.78 REMARK 500 ARG B2721 118.29 179.31 REMARK 500 LYS B2766 48.36 -141.94 REMARK 500 SER B2778 35.81 -72.15 REMARK 500 LYS B2791 -116.75 56.50 REMARK 500 TYR B2885 -179.14 -177.46 REMARK 500 ARG B2896 -119.25 58.34 REMARK 500 LYS B2921 -106.54 -123.29 REMARK 500 ALA B2924 161.32 177.95 REMARK 500 CYS B2958 35.50 -94.59 REMARK 500 LYS B2971 -121.77 61.32 REMARK 500 ASN B2998 60.21 -169.17 REMARK 500 GLU B3059 175.12 175.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A4061 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2034 O REMARK 620 2 HOH A2054 O 94.5 REMARK 620 3 ASP A2747 OD2 84.1 173.0 REMARK 620 4 LEU A2764 O 87.7 88.8 84.3 REMARK 620 5 THR A2814 O 173.0 90.9 90.0 87.9 REMARK 620 6 ASP A2816 OD2 94.0 94.4 92.6 176.3 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B4062 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2041 O REMARK 620 2 HOH A2065 O 92.3 REMARK 620 3 ASP B2923 OD2 77.2 169.2 REMARK 620 4 ASN B2940 O 89.5 92.6 85.2 REMARK 620 5 SER B2994 O 166.0 101.5 88.9 87.5 REMARK 620 6 ASP B2996 OD2 88.7 94.0 88.0 173.2 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A4062 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2109 O REMARK 620 2 HOH A2110 O 95.5 REMARK 620 3 HOH A2124 O 171.4 88.8 REMARK 620 4 ASP A2923 OD2 84.3 88.7 103.3 REMARK 620 5 ASP A2996 OD2 88.9 175.6 86.9 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B4061 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2036 O REMARK 620 2 HOH B2054 O 87.7 REMARK 620 3 ASP B2747 OD1 75.2 161.4 REMARK 620 4 LEU B2764 O 86.6 95.6 90.9 REMARK 620 5 THR B2814 O 173.1 91.8 104.2 100.3 REMARK 620 6 ASP B2816 OD2 80.8 81.7 88.1 167.2 92.3 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A4061 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A4062 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A4063 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B4061 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B4062 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B4063 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B4064 REMARK 999 REMARK 999 SEQUENCE REMARK 999 VECTOR-DERIVED APLA SEQUENCE AT N-TERMINUS, GLYCOSYLATION REMARK 999 SITES AND LONE CYSTEINE MUTATED (N2714Q,N2811K,N2900Q, REMARK 999 C3014S) DBREF 2JD4 A 2678 2681 PDB 2JD4 2JD4 2678 2681 DBREF 2JD4 A 2682 3060 UNP P19137 LAMA1_MOUSE 2706 3084 DBREF 2JD4 B 2678 2681 PDB 2JD4 2JD4 2678 2681 DBREF 2JD4 B 2682 3060 UNP P19137 LAMA1_MOUSE 2706 3084 SEQADV 2JD4 GLN A 2714 UNP P19137 ASN 2738 ENGINEERED MUTATION SEQADV 2JD4 LYS A 2811 UNP P19137 ASN 2835 ENGINEERED MUTATION SEQADV 2JD4 GLN A 2900 UNP P19137 ASN 2924 ENGINEERED MUTATION SEQADV 2JD4 SER A 3014 UNP P19137 CYS 3038 ENGINEERED MUTATION SEQADV 2JD4 GLN B 2714 UNP P19137 ASN 2738 ENGINEERED MUTATION SEQADV 2JD4 LYS B 2811 UNP P19137 ASN 2835 ENGINEERED MUTATION SEQADV 2JD4 GLN B 2900 UNP P19137 ASN 2924 ENGINEERED MUTATION SEQADV 2JD4 SER B 3014 UNP P19137 CYS 3038 ENGINEERED MUTATION SEQRES 1 A 383 ALA PRO LEU ALA GLN PRO GLU LEU CYS ALA VAL ASP THR SEQRES 2 A 383 ALA PRO GLY TYR VAL ALA GLY ALA HIS GLN PHE GLY LEU SEQRES 3 A 383 SER GLN ASN SER HIS LEU VAL LEU PRO LEU GLN GLN SER SEQRES 4 A 383 ASP VAL ARG LYS ARG LEU GLN VAL GLN LEU SER ILE ARG SEQRES 5 A 383 THR PHE ALA SER SER GLY LEU ILE TYR TYR VAL ALA HIS SEQRES 6 A 383 GLN ASN GLN MET ASP TYR ALA THR LEU GLN LEU GLN GLU SEQRES 7 A 383 GLY ARG LEU HIS PHE MET PHE ASP LEU GLY LYS GLY ARG SEQRES 8 A 383 THR LYS VAL SER HIS PRO ALA LEU LEU SER ASP GLY LYS SEQRES 9 A 383 TRP HIS THR VAL LYS THR GLU TYR ILE LYS ARG LYS ALA SEQRES 10 A 383 PHE MET THR VAL ASP GLY GLN GLU SER PRO SER VAL THR SEQRES 11 A 383 VAL VAL GLY LYS ALA THR THR LEU ASP VAL GLU ARG LYS SEQRES 12 A 383 LEU TYR LEU GLY GLY LEU PRO SER HIS TYR ARG ALA ARG SEQRES 13 A 383 ASN ILE GLY THR ILE THR HIS SER ILE PRO ALA CYS ILE SEQRES 14 A 383 GLY GLU ILE MET VAL ASN GLY GLN GLN LEU ASP LYS ASP SEQRES 15 A 383 ARG PRO LEU SER ALA SER ALA VAL ASP ARG CYS TYR VAL SEQRES 16 A 383 VAL ALA GLN GLU GLY THR PHE PHE GLU GLY SER GLY TYR SEQRES 17 A 383 ALA ALA LEU VAL LYS GLU GLY TYR LYS VAL ARG LEU ASP SEQRES 18 A 383 LEU GLN ILE THR LEU GLU PHE ARG THR THR SER LYS ASN SEQRES 19 A 383 GLY VAL LEU LEU GLY ILE SER SER ALA LYS VAL ASP ALA SEQRES 20 A 383 ILE GLY LEU GLU ILE VAL ASP GLY LYS VAL LEU PHE HIS SEQRES 21 A 383 VAL ASN ASN GLY ALA GLY ARG ILE THR ALA THR TYR GLN SEQRES 22 A 383 PRO ARG ALA ALA ARG ALA LEU CYS ASP GLY LYS TRP HIS SEQRES 23 A 383 THR LEU GLN ALA HIS LYS SER LYS HIS ARG ILE VAL LEU SEQRES 24 A 383 THR VAL ASP GLY ASN SER VAL ARG ALA GLU SER PRO HIS SEQRES 25 A 383 THR HIS SER THR SER ALA ASP THR ASN ASP PRO ILE TYR SEQRES 26 A 383 VAL GLY GLY TYR PRO ALA HIS ILE LYS GLN ASN SER LEU SEQRES 27 A 383 SER SER ARG ALA SER PHE ARG GLY CYS VAL ARG ASN LEU SEQRES 28 A 383 ARG LEU SER ARG GLY SER GLN VAL GLN SER LEU ASP LEU SEQRES 29 A 383 SER ARG ALA PHE ASP LEU GLN GLY VAL PHE PRO HIS SER SEQRES 30 A 383 CYS PRO GLY PRO GLU PRO SEQRES 1 B 383 ALA PRO LEU ALA GLN PRO GLU LEU CYS ALA VAL ASP THR SEQRES 2 B 383 ALA PRO GLY TYR VAL ALA GLY ALA HIS GLN PHE GLY LEU SEQRES 3 B 383 SER GLN ASN SER HIS LEU VAL LEU PRO LEU GLN GLN SER SEQRES 4 B 383 ASP VAL ARG LYS ARG LEU GLN VAL GLN LEU SER ILE ARG SEQRES 5 B 383 THR PHE ALA SER SER GLY LEU ILE TYR TYR VAL ALA HIS SEQRES 6 B 383 GLN ASN GLN MET ASP TYR ALA THR LEU GLN LEU GLN GLU SEQRES 7 B 383 GLY ARG LEU HIS PHE MET PHE ASP LEU GLY LYS GLY ARG SEQRES 8 B 383 THR LYS VAL SER HIS PRO ALA LEU LEU SER ASP GLY LYS SEQRES 9 B 383 TRP HIS THR VAL LYS THR GLU TYR ILE LYS ARG LYS ALA SEQRES 10 B 383 PHE MET THR VAL ASP GLY GLN GLU SER PRO SER VAL THR SEQRES 11 B 383 VAL VAL GLY LYS ALA THR THR LEU ASP VAL GLU ARG LYS SEQRES 12 B 383 LEU TYR LEU GLY GLY LEU PRO SER HIS TYR ARG ALA ARG SEQRES 13 B 383 ASN ILE GLY THR ILE THR HIS SER ILE PRO ALA CYS ILE SEQRES 14 B 383 GLY GLU ILE MET VAL ASN GLY GLN GLN LEU ASP LYS ASP SEQRES 15 B 383 ARG PRO LEU SER ALA SER ALA VAL ASP ARG CYS TYR VAL SEQRES 16 B 383 VAL ALA GLN GLU GLY THR PHE PHE GLU GLY SER GLY TYR SEQRES 17 B 383 ALA ALA LEU VAL LYS GLU GLY TYR LYS VAL ARG LEU ASP SEQRES 18 B 383 LEU GLN ILE THR LEU GLU PHE ARG THR THR SER LYS ASN SEQRES 19 B 383 GLY VAL LEU LEU GLY ILE SER SER ALA LYS VAL ASP ALA SEQRES 20 B 383 ILE GLY LEU GLU ILE VAL ASP GLY LYS VAL LEU PHE HIS SEQRES 21 B 383 VAL ASN ASN GLY ALA GLY ARG ILE THR ALA THR TYR GLN SEQRES 22 B 383 PRO ARG ALA ALA ARG ALA LEU CYS ASP GLY LYS TRP HIS SEQRES 23 B 383 THR LEU GLN ALA HIS LYS SER LYS HIS ARG ILE VAL LEU SEQRES 24 B 383 THR VAL ASP GLY ASN SER VAL ARG ALA GLU SER PRO HIS SEQRES 25 B 383 THR HIS SER THR SER ALA ASP THR ASN ASP PRO ILE TYR SEQRES 26 B 383 VAL GLY GLY TYR PRO ALA HIS ILE LYS GLN ASN SER LEU SEQRES 27 B 383 SER SER ARG ALA SER PHE ARG GLY CYS VAL ARG ASN LEU SEQRES 28 B 383 ARG LEU SER ARG GLY SER GLN VAL GLN SER LEU ASP LEU SEQRES 29 B 383 SER ARG ALA PHE ASP LEU GLN GLY VAL PHE PRO HIS SER SEQRES 30 B 383 CYS PRO GLY PRO GLU PRO HET MG A4061 1 HET MG A4062 1 HET CL A4063 1 HET MG B4061 1 HET MG B4062 1 HET CL B4063 1 HET CL B4064 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MG 4(MG 2+) FORMUL 5 CL 3(CL 1-) FORMUL 10 HOH *327(H2 O) HELIX 1 1 ARG A 2955 ASP A 2959 5 5 HELIX 2 2 ASP A 3040 ALA A 3044 5 5 HELIX 3 3 ASP B 3040 ALA B 3044 5 5 SHEET 1 AA 5 HIS A2699 GLN A2700 0 SHEET 2 AA 5 ALA A2844 VAL A2851 -1 O ILE A2846 N HIS A2699 SHEET 3 AA 5 ARG A2721 THR A2730 -1 O GLN A2725 N MET A2850 SHEET 4 AA 5 HIS A2783 ILE A2790 -1 O HIS A2783 N ILE A2728 SHEET 5 AA 5 LYS A2793 VAL A2798 -1 O LYS A2793 N ILE A2790 SHEET 1 AB 3 HIS A2699 GLN A2700 0 SHEET 2 AB 3 ALA A2844 VAL A2851 -1 O ILE A2846 N HIS A2699 SHEET 3 AB 3 GLN A2854 GLN A2855 -1 O GLN A2854 N VAL A2851 SHEET 1 AC 7 ARG A2768 SER A2772 0 SHEET 2 AC 7 ARG A2757 ASP A2763 -1 O PHE A2760 N VAL A2771 SHEET 3 AC 7 TYR A2748 GLN A2754 -1 O TYR A2748 N ASP A2763 SHEET 4 AC 7 GLY A2735 ALA A2741 -1 O GLY A2735 N LEU A2753 SHEET 5 AC 7 LYS A2820 LEU A2823 -1 O TYR A2822 N TYR A2739 SHEET 6 AC 7 HIS A2708 PRO A2712 -1 O LEU A2709 N LEU A2823 SHEET 7 AC 7 SER A2863 SER A2865 -1 O SER A2863 N VAL A2710 SHEET 1 AD 2 ALA A2874 GLN A2875 0 SHEET 2 AD 2 CYS A3055 PRO A3056 -1 O CYS A3055 N GLN A2875 SHEET 1 AE 7 ARG A2944 TYR A2949 0 SHEET 2 AE 7 LYS A2933 ASN A2939 -1 O VAL A2934 N TYR A2949 SHEET 3 AE 7 ALA A2924 VAL A2930 -1 O ALA A2924 N ASN A2939 SHEET 4 AE 7 GLY A2912 SER A2918 -1 O GLY A2912 N ILE A2929 SHEET 5 AE 7 ASP A2999 VAL A3003 -1 O TYR A3002 N GLY A2916 SHEET 6 AE 7 THR A2878 TYR A2893 -1 O ALA A2886 N VAL A3003 SHEET 7 AE 7 ARG A3022 LEU A3030 -1 O GLY A3023 N PHE A2880 SHEET 1 AF 7 ARG A2944 TYR A2949 0 SHEET 2 AF 7 LYS A2933 ASN A2939 -1 O VAL A2934 N TYR A2949 SHEET 3 AF 7 ALA A2924 VAL A2930 -1 O ALA A2924 N ASN A2939 SHEET 4 AF 7 GLY A2912 SER A2918 -1 O GLY A2912 N ILE A2929 SHEET 5 AF 7 ASP A2999 VAL A3003 -1 O TYR A3002 N GLY A2916 SHEET 6 AF 7 THR A2878 TYR A2893 -1 O ALA A2886 N VAL A3003 SHEET 7 AF 7 ASP A3046 PHE A3051 -1 O ASP A3046 N ALA A2887 SHEET 1 BA 5 HIS B2699 GLN B2700 0 SHEET 2 BA 5 ALA B2844 VAL B2851 -1 O ILE B2846 N HIS B2699 SHEET 3 BA 5 ARG B2721 THR B2730 -1 O GLN B2725 N MET B2850 SHEET 4 BA 5 HIS B2783 ILE B2790 -1 O HIS B2783 N ILE B2728 SHEET 5 BA 5 LYS B2793 VAL B2798 -1 O LYS B2793 N ILE B2790 SHEET 1 BB 3 HIS B2699 GLN B2700 0 SHEET 2 BB 3 ALA B2844 VAL B2851 -1 O ILE B2846 N HIS B2699 SHEET 3 BB 3 GLN B2854 GLN B2855 -1 O GLN B2854 N VAL B2851 SHEET 1 BC 7 ARG B2768 LEU B2776 0 SHEET 2 BC 7 ARG B2757 ASP B2763 -1 O LEU B2758 N HIS B2773 SHEET 3 BC 7 TYR B2748 GLN B2754 -1 O TYR B2748 N ASP B2763 SHEET 4 BC 7 GLY B2735 ALA B2741 -1 O GLY B2735 N LEU B2753 SHEET 5 BC 7 LYS B2820 LEU B2823 -1 O TYR B2822 N TYR B2739 SHEET 6 BC 7 HIS B2708 PRO B2712 -1 O LEU B2709 N LEU B2823 SHEET 7 BC 7 SER B2863 SER B2865 -1 O SER B2863 N VAL B2710 SHEET 1 BD 2 ALA B2874 GLN B2875 0 SHEET 2 BD 2 CYS B3055 PRO B3056 -1 O CYS B3055 N GLN B2875 SHEET 1 BE15 ARG B2944 TYR B2949 0 SHEET 2 BE15 LYS B2933 ASN B2939 -1 O VAL B2934 N TYR B2949 SHEET 3 BE15 ALA B2924 VAL B2930 -1 O ALA B2924 N ASN B2939 SHEET 4 BE15 GLY B2912 SER B2918 -1 O GLY B2912 N ILE B2929 SHEET 5 BE15 ASP B2999 VAL B3003 -1 O TYR B3002 N GLY B2916 SHEET 6 BE15 THR B2878 TYR B2893 -1 O ALA B2886 N VAL B3003 SHEET 7 BE15 ASN B2981 GLU B2986 0 SHEET 8 BE15 ARG B2973 VAL B2978 -1 O ILE B2974 N ALA B2985 SHEET 9 BE15 HIS B2963 SER B2970 -1 O GLN B2966 N THR B2977 SHEET 10 BE15 ASP B2898 ARG B2906 -1 O LEU B2899 N LYS B2969 SHEET 11 BE15 ARG B3022 ARG B3032 -1 O CYS B3024 N ARG B2906 SHEET 12 BE15 GLN B3035 SER B3038 -1 O GLN B3035 N ARG B3032 SHEET 13 BE15 ARG B3022 ARG B3032 -1 O LEU B3030 N GLN B3037 SHEET 14 BE15 ASP B3046 PHE B3051 0 SHEET 15 BE15 THR B2878 TYR B2893 -1 O PHE B2879 N PHE B3051 SSBOND 1 CYS A 2686 CYS A 2958 1555 1555 2.03 SSBOND 2 CYS A 2845 CYS A 2870 1555 1555 2.02 SSBOND 3 CYS A 3024 CYS A 3055 1555 1555 2.04 SSBOND 4 CYS B 2686 CYS B 2958 1555 1555 2.03 SSBOND 5 CYS B 2845 CYS B 2870 1555 1555 2.03 SSBOND 6 CYS B 3024 CYS B 3055 1555 1555 2.05 LINK O HOH A2034 MG MG A4061 1555 1555 2.34 LINK O HOH A2041 MG MG B4062 1555 1555 2.24 LINK O HOH A2054 MG MG A4061 1555 1555 2.24 LINK O HOH A2065 MG MG B4062 1555 1555 2.16 LINK O HOH A2109 MG MG A4062 1555 1555 2.00 LINK O HOH A2110 MG MG A4062 1555 1555 2.23 LINK O HOH A2124 MG MG A4062 1555 1555 2.17 LINK OD2 ASP A2747 MG MG A4061 1555 1555 2.26 LINK O LEU A2764 MG MG A4061 1555 1555 2.28 LINK O THR A2814 MG MG A4061 1555 1555 2.24 LINK OD2 ASP A2816 MG MG A4061 1555 1555 2.28 LINK OD2 ASP A2923 MG MG A4062 1555 1555 2.23 LINK OD2 ASP A2996 MG MG A4062 1555 1555 2.20 LINK O HOH B2036 MG MG B4061 1555 1555 2.38 LINK O HOH B2054 MG MG B4061 1555 1555 2.42 LINK OD1 ASP B2747 MG MG B4061 1555 1555 2.12 LINK O LEU B2764 MG MG B4061 1555 1555 2.00 LINK O THR B2814 MG MG B4061 1555 1555 1.95 LINK OD2 ASP B2816 MG MG B4061 1555 1555 2.15 LINK OD2 ASP B2923 MG MG B4062 1555 1555 2.21 LINK O ASN B2940 MG MG B4062 1555 1555 2.18 LINK O SER B2994 MG MG B4062 1555 1555 2.09 LINK OD2 ASP B2996 MG MG B4062 1555 1555 2.02 CISPEP 1 GLY B 3057 PRO B 3058 0 -0.02 SITE 1 AC1 6 HOH A2034 HOH A2054 ASP A2747 LEU A2764 SITE 2 AC1 6 THR A2814 ASP A2816 SITE 1 AC2 6 HOH A2109 HOH A2110 HOH A2124 ASP A2923 SITE 2 AC2 6 SER A2994 ASP A2996 SITE 1 AC3 1 SER A2727 SITE 1 AC4 6 HOH B2036 HOH B2054 ASP B2747 LEU B2764 SITE 2 AC4 6 THR B2814 ASP B2816 SITE 1 AC5 6 HOH A2041 HOH A2065 ASP B2923 ASN B2940 SITE 2 AC5 6 SER B2994 ASP B2996 SITE 1 AC6 2 GLY A2836 SER B2992 SITE 1 AC7 3 LEU B2897 ASP B2898 ARG B3032 CRYST1 70.530 55.812 100.986 90.00 98.48 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014178 0.000000 0.002114 0.00000 SCALE2 0.000000 0.017917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010012 0.00000