data_2JDD # _entry.id 2JDD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JDD pdb_00002jdd 10.2210/pdb2jdd/pdb PDBE EBI-31011 ? ? WWPDB D_1290031011 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JDD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-01-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Siehl, D.L.' 1 ? 'Castle, L.A.' 2 ? 'Gorton, R.' 3 ? 'Keenan, R.J.' 4 ? # _citation.id primary _citation.title 'The molecular basis of glyphosate resistance by an optimized microbial acetyltransferase.' _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_volume 282 _citation.page_first 11446 _citation.page_last 11455 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17272278 _citation.pdbx_database_id_DOI 10.1074/jbc.M610267200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Siehl, D.L.' 1 ? primary 'Castle, L.A.' 2 ? primary 'Gorton, R.' 3 ? primary 'Keenan, R.J.' 4 ? # _cell.entry_id 2JDD _cell.length_a 69.828 _cell.length_b 48.448 _cell.length_c 46.798 _cell.angle_alpha 90.00 _cell.angle_beta 103.57 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JDD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GLYPHOSATE N-ACETYLTRANSFERASE' 16624.992 1 ? ? ? ? 2 non-polymer syn 'ACETYL COENZYME *A' 809.571 1 ? ? ? ? 3 non-polymer syn '3-PHOSPHOGLYCERIC ACID' 186.057 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 129 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIEVKPINAEDTYELRHRILRPNQPIEACMFESDLLRGAFHLGGYYGGKLISIASFHQAEHSELQGQKQYQLRGMATLEG YREQKAGSSLIKHAEEILRKRGADLLWCNARTSASGYYKKLGFSEQGEVFDTPPVGPHILMYKRIT ; _entity_poly.pdbx_seq_one_letter_code_can ;MIEVKPINAEDTYELRHRILRPNQPIEACMFESDLLRGAFHLGGYYGGKLISIASFHQAEHSELQGQKQYQLRGMATLEG YREQKAGSSLIKHAEEILRKRGADLLWCNARTSASGYYKKLGFSEQGEVFDTPPVGPHILMYKRIT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 GLU n 1 4 VAL n 1 5 LYS n 1 6 PRO n 1 7 ILE n 1 8 ASN n 1 9 ALA n 1 10 GLU n 1 11 ASP n 1 12 THR n 1 13 TYR n 1 14 GLU n 1 15 LEU n 1 16 ARG n 1 17 HIS n 1 18 ARG n 1 19 ILE n 1 20 LEU n 1 21 ARG n 1 22 PRO n 1 23 ASN n 1 24 GLN n 1 25 PRO n 1 26 ILE n 1 27 GLU n 1 28 ALA n 1 29 CYS n 1 30 MET n 1 31 PHE n 1 32 GLU n 1 33 SER n 1 34 ASP n 1 35 LEU n 1 36 LEU n 1 37 ARG n 1 38 GLY n 1 39 ALA n 1 40 PHE n 1 41 HIS n 1 42 LEU n 1 43 GLY n 1 44 GLY n 1 45 TYR n 1 46 TYR n 1 47 GLY n 1 48 GLY n 1 49 LYS n 1 50 LEU n 1 51 ILE n 1 52 SER n 1 53 ILE n 1 54 ALA n 1 55 SER n 1 56 PHE n 1 57 HIS n 1 58 GLN n 1 59 ALA n 1 60 GLU n 1 61 HIS n 1 62 SER n 1 63 GLU n 1 64 LEU n 1 65 GLN n 1 66 GLY n 1 67 GLN n 1 68 LYS n 1 69 GLN n 1 70 TYR n 1 71 GLN n 1 72 LEU n 1 73 ARG n 1 74 GLY n 1 75 MET n 1 76 ALA n 1 77 THR n 1 78 LEU n 1 79 GLU n 1 80 GLY n 1 81 TYR n 1 82 ARG n 1 83 GLU n 1 84 GLN n 1 85 LYS n 1 86 ALA n 1 87 GLY n 1 88 SER n 1 89 SER n 1 90 LEU n 1 91 ILE n 1 92 LYS n 1 93 HIS n 1 94 ALA n 1 95 GLU n 1 96 GLU n 1 97 ILE n 1 98 LEU n 1 99 ARG n 1 100 LYS n 1 101 ARG n 1 102 GLY n 1 103 ALA n 1 104 ASP n 1 105 LEU n 1 106 LEU n 1 107 TRP n 1 108 CYS n 1 109 ASN n 1 110 ALA n 1 111 ARG n 1 112 THR n 1 113 SER n 1 114 ALA n 1 115 SER n 1 116 GLY n 1 117 TYR n 1 118 TYR n 1 119 LYS n 1 120 LYS n 1 121 LEU n 1 122 GLY n 1 123 PHE n 1 124 SER n 1 125 GLU n 1 126 GLN n 1 127 GLY n 1 128 GLU n 1 129 VAL n 1 130 PHE n 1 131 ASP n 1 132 THR n 1 133 PRO n 1 134 PRO n 1 135 VAL n 1 136 GLY n 1 137 PRO n 1 138 HIS n 1 139 ILE n 1 140 LEU n 1 141 MET n 1 142 TYR n 1 143 LYS n 1 144 ARG n 1 145 ILE n 1 146 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BACILLUS LICHENIFORMIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1402 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TG1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQE80 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'THE ENZYME IS A SHUFFLED VARIANT DERIVED FROM GENES DISCOVERED IN B. LICHENIFORMIS' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2JDD _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2JDD _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JDD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2JDD _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 146 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3PG non-polymer . '3-PHOSPHOGLYCERIC ACID' ? 'C3 H7 O7 P' 186.057 ACO non-polymer . 'ACETYL COENZYME *A' ? 'C23 H38 N7 O17 P3 S' 809.571 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JDD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM SODIUM ACETATE, PH 4.6 150-300 MM AMMONIUM SULFATE 20-25% PEG4000 2 MM ACETYL COA 20 MM D-3-PHOSPHOGLYCERATE' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2003-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0072 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 1.0072 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JDD _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.600 _reflns.d_resolution_high 1.600 _reflns.number_obs 19905 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.03000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 41.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 89.6 _reflns_shell.Rmerge_I_obs 0.11000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.300 _reflns_shell.pdbx_redundancy 2.40 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JDD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18899 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.64 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.157 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.155 _refine.ls_R_factor_R_free 0.193 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1014 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 13.54 _refine.aniso_B[1][1] 0.13000 _refine.aniso_B[2][2] -0.09000 _refine.aniso_B[3][3] 0.01000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.11000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. A MINOR ACTIVE SITE CONFIGURATION IN WHICH 3PG IS REPLACED BY SO4 AND A WATER MOLECULE WAS MODELED AT 0.3 OCCUPANCY. DISORDERED OR RADIATION DAMAGED SURFACE SIDECHAIN ATOMS WERE MODELED AT 0.5 OCCUPANCY. ; _refine.pdbx_starting_model 'PDB ENTRY 2BSW' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.115 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.overall_SU_ML 0.044 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.643 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1161 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1357 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 45.64 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1273 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1133 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.448 2.027 ? 1725 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.776 3.000 ? 2636 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.049 5.000 ? 150 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 27.387 22.881 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.476 15.000 ? 219 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.774 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.082 0.200 ? 176 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1386 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 269 'X-RAY DIFFRACTION' ? r_nbd_refined 0.199 0.200 ? 216 'X-RAY DIFFRACTION' ? r_nbd_other 0.198 0.200 ? 1134 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.177 0.200 ? 599 'X-RAY DIFFRACTION' ? r_nbtor_other 0.083 0.200 ? 704 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.161 0.200 ? 94 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.055 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.304 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.130 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.374 1.500 ? 945 'X-RAY DIFFRACTION' ? r_mcbond_other 0.401 1.500 ? 303 'X-RAY DIFFRACTION' ? r_mcangle_it 1.610 2.000 ? 1163 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.397 3.000 ? 635 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.078 4.500 ? 559 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.289 3.000 ? 2922 'X-RAY DIFFRACTION' ? r_sphericity_free 5.577 3.000 ? 129 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.023 3.000 ? 2377 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.64 _refine_ls_shell.number_reflns_R_work 1237 _refine_ls_shell.R_factor_R_work 0.1160 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.1610 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JDD _struct.title 'Glyphosate N-acetyltransferase bound to acetyl COA and 3-phosphoglycerate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JDD _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'GNAT, GLYPHOSATE, TRANSFERASE, N-ACETYLTRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 8 ? ASP A 11 ? ASN A 8 ASP A 11 5 ? 4 HELX_P HELX_P2 2 THR A 12 ? LEU A 20 ? THR A 12 LEU A 20 1 ? 9 HELX_P HELX_P3 3 PRO A 25 ? MET A 30 ? PRO A 25 MET A 30 5 ? 6 HELX_P HELX_P4 4 PHE A 31 ? LEU A 36 ? PHE A 31 LEU A 36 5 ? 6 HELX_P HELX_P5 5 LYS A 85 ? ARG A 101 ? LYS A 85 ARG A 101 1 ? 17 HELX_P HELX_P6 6 ALA A 114 ? LEU A 121 ? ALA A 114 LEU A 121 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 133 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 133 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 134 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 134 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.15 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 3 ? ILE A 7 ? GLU A 3 ILE A 7 AA 2 PHE A 40 ? TYR A 46 ? PHE A 40 TYR A 46 AA 3 LYS A 49 ? GLN A 58 ? LYS A 49 GLN A 58 AA 4 GLN A 69 ? THR A 77 ? GLN A 69 THR A 77 AA 5 LEU A 105 ? ARG A 111 ? LEU A 105 ARG A 111 AA 6 PRO A 137 ? ARG A 144 ? PRO A 137 ARG A 144 AA 7 SER A 124 ? ASP A 131 ? SER A 124 ASP A 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 7 ? N ILE A 7 O HIS A 41 ? O HIS A 41 AA 2 3 N TYR A 46 ? N TYR A 46 O LYS A 49 ? O LYS A 49 AA 3 4 N HIS A 57 ? N HIS A 57 O GLN A 71 ? O GLN A 71 AA 4 5 N TYR A 70 ? N TYR A 70 O LEU A 105 ? O LEU A 105 AA 5 6 N ALA A 110 ? N ALA A 110 O ILE A 139 ? O ILE A 139 AA 6 7 N TYR A 142 ? N TYR A 142 O SER A 124 ? O SER A 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 31 'BINDING SITE FOR RESIDUE ACO A1147' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE 3PG A1148' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A1149' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 31 MET A 75 ? MET A 75 . ? 1_555 ? 2 AC1 31 ALA A 76 ? ALA A 76 . ? 1_555 ? 3 AC1 31 THR A 77 ? THR A 77 . ? 1_555 ? 4 AC1 31 ARG A 82 ? ARG A 82 . ? 1_555 ? 5 AC1 31 GLU A 83 ? GLU A 83 . ? 1_555 ? 6 AC1 31 GLN A 84 ? GLN A 84 . ? 1_555 ? 7 AC1 31 LYS A 85 ? LYS A 85 . ? 1_555 ? 8 AC1 31 GLY A 87 ? GLY A 87 . ? 1_555 ? 9 AC1 31 SER A 88 ? SER A 88 . ? 1_555 ? 10 AC1 31 CYS A 108 ? CYS A 108 . ? 1_555 ? 11 AC1 31 ASN A 109 ? ASN A 109 . ? 1_555 ? 12 AC1 31 ARG A 111 ? ARG A 111 . ? 1_555 ? 13 AC1 31 SER A 113 ? SER A 113 . ? 1_555 ? 14 AC1 31 ALA A 114 ? ALA A 114 . ? 1_555 ? 15 AC1 31 GLY A 116 ? GLY A 116 . ? 1_555 ? 16 AC1 31 TYR A 117 ? TYR A 117 . ? 1_555 ? 17 AC1 31 TYR A 118 ? TYR A 118 . ? 1_555 ? 18 AC1 31 LYS A 120 ? LYS A 120 . ? 1_555 ? 19 AC1 31 3PG C . ? 3PG A 1148 . ? 1_555 ? 20 AC1 31 SO4 D . ? SO4 A 1149 . ? 1_555 ? 21 AC1 31 HOH E . ? HOH A 2074 . ? 1_555 ? 22 AC1 31 HOH E . ? HOH A 2079 . ? 1_555 ? 23 AC1 31 HOH E . ? HOH A 2093 . ? 1_555 ? 24 AC1 31 HOH E . ? HOH A 2098 . ? 1_555 ? 25 AC1 31 HOH E . ? HOH A 2120 . ? 1_555 ? 26 AC1 31 HOH E . ? HOH A 2121 . ? 1_555 ? 27 AC1 31 HOH E . ? HOH A 2122 . ? 1_555 ? 28 AC1 31 HOH E . ? HOH A 2123 . ? 1_555 ? 29 AC1 31 HOH E . ? HOH A 2124 . ? 1_555 ? 30 AC1 31 HOH E . ? HOH A 2125 . ? 1_555 ? 31 AC1 31 HOH E . ? HOH A 2126 . ? 1_555 ? 32 AC2 11 LEU A 20 ? LEU A 20 . ? 1_555 ? 33 AC2 11 ARG A 21 ? ARG A 21 . ? 1_555 ? 34 AC2 11 PHE A 31 ? PHE A 31 . ? 1_555 ? 35 AC2 11 ARG A 73 ? ARG A 73 . ? 1_555 ? 36 AC2 11 GLY A 74 ? GLY A 74 . ? 1_555 ? 37 AC2 11 ARG A 111 ? ARG A 111 . ? 1_555 ? 38 AC2 11 VAL A 135 ? VAL A 135 . ? 1_555 ? 39 AC2 11 HIS A 138 ? HIS A 138 . ? 1_555 ? 40 AC2 11 ACO B . ? ACO A 1147 . ? 1_555 ? 41 AC2 11 SO4 D . ? SO4 A 1149 . ? 1_555 ? 42 AC2 11 HOH E . ? HOH A 2129 . ? 1_555 ? 43 AC3 6 ARG A 21 ? ARG A 21 . ? 1_555 ? 44 AC3 6 ARG A 111 ? ARG A 111 . ? 1_555 ? 45 AC3 6 HIS A 138 ? HIS A 138 . ? 1_555 ? 46 AC3 6 ACO B . ? ACO A 1147 . ? 1_555 ? 47 AC3 6 3PG C . ? 3PG A 1148 . ? 1_555 ? 48 AC3 6 HOH E . ? HOH A 2129 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JDD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JDD _atom_sites.fract_transf_matrix[1][1] 0.014321 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003457 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020641 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021982 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 TRP 107 107 107 TRP TRP A . n A 1 108 CYS 108 108 108 CYS CYS A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 MET 141 141 141 MET MET A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 THR 146 146 146 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO 1 1147 1147 ACO ACO A . C 3 3PG 1 1148 1148 3PG 3PG A . D 4 SO4 1 1149 1149 SO4 SO4 A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . E 5 HOH 66 2066 2066 HOH HOH A . E 5 HOH 67 2067 2067 HOH HOH A . E 5 HOH 68 2068 2068 HOH HOH A . E 5 HOH 69 2069 2069 HOH HOH A . E 5 HOH 70 2070 2070 HOH HOH A . E 5 HOH 71 2071 2071 HOH HOH A . E 5 HOH 72 2072 2072 HOH HOH A . E 5 HOH 73 2073 2073 HOH HOH A . E 5 HOH 74 2074 2074 HOH HOH A . E 5 HOH 75 2075 2075 HOH HOH A . E 5 HOH 76 2076 2076 HOH HOH A . E 5 HOH 77 2077 2077 HOH HOH A . E 5 HOH 78 2078 2078 HOH HOH A . E 5 HOH 79 2079 2079 HOH HOH A . E 5 HOH 80 2080 2080 HOH HOH A . E 5 HOH 81 2081 2081 HOH HOH A . E 5 HOH 82 2082 2082 HOH HOH A . E 5 HOH 83 2083 2083 HOH HOH A . E 5 HOH 84 2084 2084 HOH HOH A . E 5 HOH 85 2085 2085 HOH HOH A . E 5 HOH 86 2086 2086 HOH HOH A . E 5 HOH 87 2087 2087 HOH HOH A . E 5 HOH 88 2088 2088 HOH HOH A . E 5 HOH 89 2089 2089 HOH HOH A . E 5 HOH 90 2090 2090 HOH HOH A . E 5 HOH 91 2091 2091 HOH HOH A . E 5 HOH 92 2092 2092 HOH HOH A . E 5 HOH 93 2093 2093 HOH HOH A . E 5 HOH 94 2094 2094 HOH HOH A . E 5 HOH 95 2095 2095 HOH HOH A . E 5 HOH 96 2096 2096 HOH HOH A . E 5 HOH 97 2097 2097 HOH HOH A . E 5 HOH 98 2098 2098 HOH HOH A . E 5 HOH 99 2099 2099 HOH HOH A . E 5 HOH 100 2100 2100 HOH HOH A . E 5 HOH 101 2101 2101 HOH HOH A . E 5 HOH 102 2102 2102 HOH HOH A . E 5 HOH 103 2103 2103 HOH HOH A . E 5 HOH 104 2104 2104 HOH HOH A . E 5 HOH 105 2105 2105 HOH HOH A . E 5 HOH 106 2106 2106 HOH HOH A . E 5 HOH 107 2107 2107 HOH HOH A . E 5 HOH 108 2108 2108 HOH HOH A . E 5 HOH 109 2109 2109 HOH HOH A . E 5 HOH 110 2110 2110 HOH HOH A . E 5 HOH 111 2111 2111 HOH HOH A . E 5 HOH 112 2112 2112 HOH HOH A . E 5 HOH 113 2113 2113 HOH HOH A . E 5 HOH 114 2114 2114 HOH HOH A . E 5 HOH 115 2115 2115 HOH HOH A . E 5 HOH 116 2116 2116 HOH HOH A . E 5 HOH 117 2117 2117 HOH HOH A . E 5 HOH 118 2118 2118 HOH HOH A . E 5 HOH 119 2119 2119 HOH HOH A . E 5 HOH 120 2120 2120 HOH HOH A . E 5 HOH 121 2121 2121 HOH HOH A . E 5 HOH 122 2122 2122 HOH HOH A . E 5 HOH 123 2123 2123 HOH HOH A . E 5 HOH 124 2124 2124 HOH HOH A . E 5 HOH 125 2125 2125 HOH HOH A . E 5 HOH 126 2126 2126 HOH HOH A . E 5 HOH 127 2127 2127 HOH HOH A . E 5 HOH 128 2128 2128 HOH HOH A . E 5 HOH 129 2129 2129 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2004 ? E HOH . 2 1 A HOH 2011 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2018-12-19 5 'Structure model' 2 1 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' citation 4 4 'Structure model' pdbx_struct_special_symmetry 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_database_status 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.label_alt_id' 2 4 'Structure model' '_atom_site_anisotrop.pdbx_label_alt_id' 3 4 'Structure model' '_citation.journal_abbrev' 4 4 'Structure model' '_citation.page_last' 5 4 'Structure model' '_citation.pdbx_database_id_DOI' 6 4 'Structure model' '_citation.title' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2JDD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE N-TERMINAL METHIONINE RESIDUE IS DISORDERED IN THE ELECTRON DENSITY, AND WAS NOT MODELED. THE SEQUENCE HAS ACCESSION NUMBER AY597417 IN GENBANK DATABASE ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3PG C1 C N N 1 3PG O1 O N N 2 3PG O2 O N N 3 3PG C2 C N R 4 3PG O3 O N N 5 3PG C3 C N N 6 3PG O1P O N N 7 3PG P P N N 8 3PG O2P O N N 9 3PG O3P O N N 10 3PG O4P O N N 11 3PG HO2 H N N 12 3PG H2 H N N 13 3PG HO3 H N N 14 3PG H31 H N N 15 3PG H32 H N N 16 3PG HOP3 H N N 17 3PG HOP4 H N N 18 ACO N1A N Y N 19 ACO C2A C Y N 20 ACO N3A N Y N 21 ACO C4A C Y N 22 ACO C5A C Y N 23 ACO C6A C Y N 24 ACO N6A N N N 25 ACO N7A N Y N 26 ACO C8A C Y N 27 ACO N9A N Y N 28 ACO C1B C N R 29 ACO C2B C N R 30 ACO O2B O N N 31 ACO C3B C N S 32 ACO O3B O N N 33 ACO P3B P N N 34 ACO O7A O N N 35 ACO O8A O N N 36 ACO O9A O N N 37 ACO C4B C N R 38 ACO O4B O N N 39 ACO C5B C N N 40 ACO O5B O N N 41 ACO P1A P N S 42 ACO O1A O N N 43 ACO O2A O N N 44 ACO O3A O N N 45 ACO P2A P N S 46 ACO O4A O N N 47 ACO O5A O N N 48 ACO O6A O N N 49 ACO CBP C N N 50 ACO CCP C N N 51 ACO CDP C N N 52 ACO CEP C N N 53 ACO CAP C N R 54 ACO OAP O N N 55 ACO C9P C N N 56 ACO O9P O N N 57 ACO N8P N N N 58 ACO C7P C N N 59 ACO C6P C N N 60 ACO C5P C N N 61 ACO O5P O N N 62 ACO N4P N N N 63 ACO C3P C N N 64 ACO C2P C N N 65 ACO S1P S N N 66 ACO C C N N 67 ACO O O N N 68 ACO CH3 C N N 69 ACO H2A H N N 70 ACO H61A H N N 71 ACO H62A H N N 72 ACO H8A H N N 73 ACO H1B H N N 74 ACO H2B H N N 75 ACO HO2A H N N 76 ACO H3B H N N 77 ACO HOA8 H N N 78 ACO HOA9 H N N 79 ACO H4B H N N 80 ACO H51A H N N 81 ACO H52A H N N 82 ACO HOA2 H N N 83 ACO HOA5 H N N 84 ACO H121 H N N 85 ACO H122 H N N 86 ACO H131 H N N 87 ACO H132 H N N 88 ACO H133 H N N 89 ACO H141 H N N 90 ACO H142 H N N 91 ACO H143 H N N 92 ACO H10 H N N 93 ACO HO1 H N N 94 ACO HN8 H N N 95 ACO H71 H N N 96 ACO H72 H N N 97 ACO H61 H N N 98 ACO H62 H N N 99 ACO HN4 H N N 100 ACO H31 H N N 101 ACO H32 H N N 102 ACO H21 H N N 103 ACO H22 H N N 104 ACO HH31 H N N 105 ACO HH32 H N N 106 ACO HH33 H N N 107 ALA N N N N 108 ALA CA C N S 109 ALA C C N N 110 ALA O O N N 111 ALA CB C N N 112 ALA OXT O N N 113 ALA H H N N 114 ALA H2 H N N 115 ALA HA H N N 116 ALA HB1 H N N 117 ALA HB2 H N N 118 ALA HB3 H N N 119 ALA HXT H N N 120 ARG N N N N 121 ARG CA C N S 122 ARG C C N N 123 ARG O O N N 124 ARG CB C N N 125 ARG CG C N N 126 ARG CD C N N 127 ARG NE N N N 128 ARG CZ C N N 129 ARG NH1 N N N 130 ARG NH2 N N N 131 ARG OXT O N N 132 ARG H H N N 133 ARG H2 H N N 134 ARG HA H N N 135 ARG HB2 H N N 136 ARG HB3 H N N 137 ARG HG2 H N N 138 ARG HG3 H N N 139 ARG HD2 H N N 140 ARG HD3 H N N 141 ARG HE H N N 142 ARG HH11 H N N 143 ARG HH12 H N N 144 ARG HH21 H N N 145 ARG HH22 H N N 146 ARG HXT H N N 147 ASN N N N N 148 ASN CA C N S 149 ASN C C N N 150 ASN O O N N 151 ASN CB C N N 152 ASN CG C N N 153 ASN OD1 O N N 154 ASN ND2 N N N 155 ASN OXT O N N 156 ASN H H N N 157 ASN H2 H N N 158 ASN HA H N N 159 ASN HB2 H N N 160 ASN HB3 H N N 161 ASN HD21 H N N 162 ASN HD22 H N N 163 ASN HXT H N N 164 ASP N N N N 165 ASP CA C N S 166 ASP C C N N 167 ASP O O N N 168 ASP CB C N N 169 ASP CG C N N 170 ASP OD1 O N N 171 ASP OD2 O N N 172 ASP OXT O N N 173 ASP H H N N 174 ASP H2 H N N 175 ASP HA H N N 176 ASP HB2 H N N 177 ASP HB3 H N N 178 ASP HD2 H N N 179 ASP HXT H N N 180 CYS N N N N 181 CYS CA C N R 182 CYS C C N N 183 CYS O O N N 184 CYS CB C N N 185 CYS SG S N N 186 CYS OXT O N N 187 CYS H H N N 188 CYS H2 H N N 189 CYS HA H N N 190 CYS HB2 H N N 191 CYS HB3 H N N 192 CYS HG H N N 193 CYS HXT H N N 194 GLN N N N N 195 GLN CA C N S 196 GLN C C N N 197 GLN O O N N 198 GLN CB C N N 199 GLN CG C N N 200 GLN CD C N N 201 GLN OE1 O N N 202 GLN NE2 N N N 203 GLN OXT O N N 204 GLN H H N N 205 GLN H2 H N N 206 GLN HA H N N 207 GLN HB2 H N N 208 GLN HB3 H N N 209 GLN HG2 H N N 210 GLN HG3 H N N 211 GLN HE21 H N N 212 GLN HE22 H N N 213 GLN HXT H N N 214 GLU N N N N 215 GLU CA C N S 216 GLU C C N N 217 GLU O O N N 218 GLU CB C N N 219 GLU CG C N N 220 GLU CD C N N 221 GLU OE1 O N N 222 GLU OE2 O N N 223 GLU OXT O N N 224 GLU H H N N 225 GLU H2 H N N 226 GLU HA H N N 227 GLU HB2 H N N 228 GLU HB3 H N N 229 GLU HG2 H N N 230 GLU HG3 H N N 231 GLU HE2 H N N 232 GLU HXT H N N 233 GLY N N N N 234 GLY CA C N N 235 GLY C C N N 236 GLY O O N N 237 GLY OXT O N N 238 GLY H H N N 239 GLY H2 H N N 240 GLY HA2 H N N 241 GLY HA3 H N N 242 GLY HXT H N N 243 HIS N N N N 244 HIS CA C N S 245 HIS C C N N 246 HIS O O N N 247 HIS CB C N N 248 HIS CG C Y N 249 HIS ND1 N Y N 250 HIS CD2 C Y N 251 HIS CE1 C Y N 252 HIS NE2 N Y N 253 HIS OXT O N N 254 HIS H H N N 255 HIS H2 H N N 256 HIS HA H N N 257 HIS HB2 H N N 258 HIS HB3 H N N 259 HIS HD1 H N N 260 HIS HD2 H N N 261 HIS HE1 H N N 262 HIS HE2 H N N 263 HIS HXT H N N 264 HOH O O N N 265 HOH H1 H N N 266 HOH H2 H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 SO4 S S N N 411 SO4 O1 O N N 412 SO4 O2 O N N 413 SO4 O3 O N N 414 SO4 O4 O N N 415 THR N N N N 416 THR CA C N S 417 THR C C N N 418 THR O O N N 419 THR CB C N R 420 THR OG1 O N N 421 THR CG2 C N N 422 THR OXT O N N 423 THR H H N N 424 THR H2 H N N 425 THR HA H N N 426 THR HB H N N 427 THR HG1 H N N 428 THR HG21 H N N 429 THR HG22 H N N 430 THR HG23 H N N 431 THR HXT H N N 432 TRP N N N N 433 TRP CA C N S 434 TRP C C N N 435 TRP O O N N 436 TRP CB C N N 437 TRP CG C Y N 438 TRP CD1 C Y N 439 TRP CD2 C Y N 440 TRP NE1 N Y N 441 TRP CE2 C Y N 442 TRP CE3 C Y N 443 TRP CZ2 C Y N 444 TRP CZ3 C Y N 445 TRP CH2 C Y N 446 TRP OXT O N N 447 TRP H H N N 448 TRP H2 H N N 449 TRP HA H N N 450 TRP HB2 H N N 451 TRP HB3 H N N 452 TRP HD1 H N N 453 TRP HE1 H N N 454 TRP HE3 H N N 455 TRP HZ2 H N N 456 TRP HZ3 H N N 457 TRP HH2 H N N 458 TRP HXT H N N 459 TYR N N N N 460 TYR CA C N S 461 TYR C C N N 462 TYR O O N N 463 TYR CB C N N 464 TYR CG C Y N 465 TYR CD1 C Y N 466 TYR CD2 C Y N 467 TYR CE1 C Y N 468 TYR CE2 C Y N 469 TYR CZ C Y N 470 TYR OH O N N 471 TYR OXT O N N 472 TYR H H N N 473 TYR H2 H N N 474 TYR HA H N N 475 TYR HB2 H N N 476 TYR HB3 H N N 477 TYR HD1 H N N 478 TYR HD2 H N N 479 TYR HE1 H N N 480 TYR HE2 H N N 481 TYR HH H N N 482 TYR HXT H N N 483 VAL N N N N 484 VAL CA C N S 485 VAL C C N N 486 VAL O O N N 487 VAL CB C N N 488 VAL CG1 C N N 489 VAL CG2 C N N 490 VAL OXT O N N 491 VAL H H N N 492 VAL H2 H N N 493 VAL HA H N N 494 VAL HB H N N 495 VAL HG11 H N N 496 VAL HG12 H N N 497 VAL HG13 H N N 498 VAL HG21 H N N 499 VAL HG22 H N N 500 VAL HG23 H N N 501 VAL HXT H N N 502 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3PG C1 O1 doub N N 1 3PG C1 O2 sing N N 2 3PG C1 C2 sing N N 3 3PG O2 HO2 sing N N 4 3PG C2 O3 sing N N 5 3PG C2 C3 sing N N 6 3PG C2 H2 sing N N 7 3PG O3 HO3 sing N N 8 3PG C3 O1P sing N N 9 3PG C3 H31 sing N N 10 3PG C3 H32 sing N N 11 3PG O1P P sing N N 12 3PG P O2P doub N N 13 3PG P O3P sing N N 14 3PG P O4P sing N N 15 3PG O3P HOP3 sing N N 16 3PG O4P HOP4 sing N N 17 ACO N1A C2A sing Y N 18 ACO N1A C6A doub Y N 19 ACO C2A N3A doub Y N 20 ACO C2A H2A sing N N 21 ACO N3A C4A sing Y N 22 ACO C4A C5A doub Y N 23 ACO C4A N9A sing Y N 24 ACO C5A C6A sing Y N 25 ACO C5A N7A sing Y N 26 ACO C6A N6A sing N N 27 ACO N6A H61A sing N N 28 ACO N6A H62A sing N N 29 ACO N7A C8A doub Y N 30 ACO C8A N9A sing Y N 31 ACO C8A H8A sing N N 32 ACO N9A C1B sing N N 33 ACO C1B C2B sing N N 34 ACO C1B O4B sing N N 35 ACO C1B H1B sing N N 36 ACO C2B O2B sing N N 37 ACO C2B C3B sing N N 38 ACO C2B H2B sing N N 39 ACO O2B HO2A sing N N 40 ACO C3B O3B sing N N 41 ACO C3B C4B sing N N 42 ACO C3B H3B sing N N 43 ACO O3B P3B sing N N 44 ACO P3B O7A doub N N 45 ACO P3B O8A sing N N 46 ACO P3B O9A sing N N 47 ACO O8A HOA8 sing N N 48 ACO O9A HOA9 sing N N 49 ACO C4B O4B sing N N 50 ACO C4B C5B sing N N 51 ACO C4B H4B sing N N 52 ACO C5B O5B sing N N 53 ACO C5B H51A sing N N 54 ACO C5B H52A sing N N 55 ACO O5B P1A sing N N 56 ACO P1A O1A doub N N 57 ACO P1A O2A sing N N 58 ACO P1A O3A sing N N 59 ACO O2A HOA2 sing N N 60 ACO O3A P2A sing N N 61 ACO P2A O4A doub N N 62 ACO P2A O5A sing N N 63 ACO P2A O6A sing N N 64 ACO O5A HOA5 sing N N 65 ACO O6A CCP sing N N 66 ACO CBP CCP sing N N 67 ACO CBP CDP sing N N 68 ACO CBP CEP sing N N 69 ACO CBP CAP sing N N 70 ACO CCP H121 sing N N 71 ACO CCP H122 sing N N 72 ACO CDP H131 sing N N 73 ACO CDP H132 sing N N 74 ACO CDP H133 sing N N 75 ACO CEP H141 sing N N 76 ACO CEP H142 sing N N 77 ACO CEP H143 sing N N 78 ACO CAP OAP sing N N 79 ACO CAP C9P sing N N 80 ACO CAP H10 sing N N 81 ACO OAP HO1 sing N N 82 ACO C9P O9P doub N N 83 ACO C9P N8P sing N N 84 ACO N8P C7P sing N N 85 ACO N8P HN8 sing N N 86 ACO C7P C6P sing N N 87 ACO C7P H71 sing N N 88 ACO C7P H72 sing N N 89 ACO C6P C5P sing N N 90 ACO C6P H61 sing N N 91 ACO C6P H62 sing N N 92 ACO C5P O5P doub N N 93 ACO C5P N4P sing N N 94 ACO N4P C3P sing N N 95 ACO N4P HN4 sing N N 96 ACO C3P C2P sing N N 97 ACO C3P H31 sing N N 98 ACO C3P H32 sing N N 99 ACO C2P S1P sing N N 100 ACO C2P H21 sing N N 101 ACO C2P H22 sing N N 102 ACO S1P C sing N N 103 ACO C O doub N N 104 ACO C CH3 sing N N 105 ACO CH3 HH31 sing N N 106 ACO CH3 HH32 sing N N 107 ACO CH3 HH33 sing N N 108 ALA N CA sing N N 109 ALA N H sing N N 110 ALA N H2 sing N N 111 ALA CA C sing N N 112 ALA CA CB sing N N 113 ALA CA HA sing N N 114 ALA C O doub N N 115 ALA C OXT sing N N 116 ALA CB HB1 sing N N 117 ALA CB HB2 sing N N 118 ALA CB HB3 sing N N 119 ALA OXT HXT sing N N 120 ARG N CA sing N N 121 ARG N H sing N N 122 ARG N H2 sing N N 123 ARG CA C sing N N 124 ARG CA CB sing N N 125 ARG CA HA sing N N 126 ARG C O doub N N 127 ARG C OXT sing N N 128 ARG CB CG sing N N 129 ARG CB HB2 sing N N 130 ARG CB HB3 sing N N 131 ARG CG CD sing N N 132 ARG CG HG2 sing N N 133 ARG CG HG3 sing N N 134 ARG CD NE sing N N 135 ARG CD HD2 sing N N 136 ARG CD HD3 sing N N 137 ARG NE CZ sing N N 138 ARG NE HE sing N N 139 ARG CZ NH1 sing N N 140 ARG CZ NH2 doub N N 141 ARG NH1 HH11 sing N N 142 ARG NH1 HH12 sing N N 143 ARG NH2 HH21 sing N N 144 ARG NH2 HH22 sing N N 145 ARG OXT HXT sing N N 146 ASN N CA sing N N 147 ASN N H sing N N 148 ASN N H2 sing N N 149 ASN CA C sing N N 150 ASN CA CB sing N N 151 ASN CA HA sing N N 152 ASN C O doub N N 153 ASN C OXT sing N N 154 ASN CB CG sing N N 155 ASN CB HB2 sing N N 156 ASN CB HB3 sing N N 157 ASN CG OD1 doub N N 158 ASN CG ND2 sing N N 159 ASN ND2 HD21 sing N N 160 ASN ND2 HD22 sing N N 161 ASN OXT HXT sing N N 162 ASP N CA sing N N 163 ASP N H sing N N 164 ASP N H2 sing N N 165 ASP CA C sing N N 166 ASP CA CB sing N N 167 ASP CA HA sing N N 168 ASP C O doub N N 169 ASP C OXT sing N N 170 ASP CB CG sing N N 171 ASP CB HB2 sing N N 172 ASP CB HB3 sing N N 173 ASP CG OD1 doub N N 174 ASP CG OD2 sing N N 175 ASP OD2 HD2 sing N N 176 ASP OXT HXT sing N N 177 CYS N CA sing N N 178 CYS N H sing N N 179 CYS N H2 sing N N 180 CYS CA C sing N N 181 CYS CA CB sing N N 182 CYS CA HA sing N N 183 CYS C O doub N N 184 CYS C OXT sing N N 185 CYS CB SG sing N N 186 CYS CB HB2 sing N N 187 CYS CB HB3 sing N N 188 CYS SG HG sing N N 189 CYS OXT HXT sing N N 190 GLN N CA sing N N 191 GLN N H sing N N 192 GLN N H2 sing N N 193 GLN CA C sing N N 194 GLN CA CB sing N N 195 GLN CA HA sing N N 196 GLN C O doub N N 197 GLN C OXT sing N N 198 GLN CB CG sing N N 199 GLN CB HB2 sing N N 200 GLN CB HB3 sing N N 201 GLN CG CD sing N N 202 GLN CG HG2 sing N N 203 GLN CG HG3 sing N N 204 GLN CD OE1 doub N N 205 GLN CD NE2 sing N N 206 GLN NE2 HE21 sing N N 207 GLN NE2 HE22 sing N N 208 GLN OXT HXT sing N N 209 GLU N CA sing N N 210 GLU N H sing N N 211 GLU N H2 sing N N 212 GLU CA C sing N N 213 GLU CA CB sing N N 214 GLU CA HA sing N N 215 GLU C O doub N N 216 GLU C OXT sing N N 217 GLU CB CG sing N N 218 GLU CB HB2 sing N N 219 GLU CB HB3 sing N N 220 GLU CG CD sing N N 221 GLU CG HG2 sing N N 222 GLU CG HG3 sing N N 223 GLU CD OE1 doub N N 224 GLU CD OE2 sing N N 225 GLU OE2 HE2 sing N N 226 GLU OXT HXT sing N N 227 GLY N CA sing N N 228 GLY N H sing N N 229 GLY N H2 sing N N 230 GLY CA C sing N N 231 GLY CA HA2 sing N N 232 GLY CA HA3 sing N N 233 GLY C O doub N N 234 GLY C OXT sing N N 235 GLY OXT HXT sing N N 236 HIS N CA sing N N 237 HIS N H sing N N 238 HIS N H2 sing N N 239 HIS CA C sing N N 240 HIS CA CB sing N N 241 HIS CA HA sing N N 242 HIS C O doub N N 243 HIS C OXT sing N N 244 HIS CB CG sing N N 245 HIS CB HB2 sing N N 246 HIS CB HB3 sing N N 247 HIS CG ND1 sing Y N 248 HIS CG CD2 doub Y N 249 HIS ND1 CE1 doub Y N 250 HIS ND1 HD1 sing N N 251 HIS CD2 NE2 sing Y N 252 HIS CD2 HD2 sing N N 253 HIS CE1 NE2 sing Y N 254 HIS CE1 HE1 sing N N 255 HIS NE2 HE2 sing N N 256 HIS OXT HXT sing N N 257 HOH O H1 sing N N 258 HOH O H2 sing N N 259 ILE N CA sing N N 260 ILE N H sing N N 261 ILE N H2 sing N N 262 ILE CA C sing N N 263 ILE CA CB sing N N 264 ILE CA HA sing N N 265 ILE C O doub N N 266 ILE C OXT sing N N 267 ILE CB CG1 sing N N 268 ILE CB CG2 sing N N 269 ILE CB HB sing N N 270 ILE CG1 CD1 sing N N 271 ILE CG1 HG12 sing N N 272 ILE CG1 HG13 sing N N 273 ILE CG2 HG21 sing N N 274 ILE CG2 HG22 sing N N 275 ILE CG2 HG23 sing N N 276 ILE CD1 HD11 sing N N 277 ILE CD1 HD12 sing N N 278 ILE CD1 HD13 sing N N 279 ILE OXT HXT sing N N 280 LEU N CA sing N N 281 LEU N H sing N N 282 LEU N H2 sing N N 283 LEU CA C sing N N 284 LEU CA CB sing N N 285 LEU CA HA sing N N 286 LEU C O doub N N 287 LEU C OXT sing N N 288 LEU CB CG sing N N 289 LEU CB HB2 sing N N 290 LEU CB HB3 sing N N 291 LEU CG CD1 sing N N 292 LEU CG CD2 sing N N 293 LEU CG HG sing N N 294 LEU CD1 HD11 sing N N 295 LEU CD1 HD12 sing N N 296 LEU CD1 HD13 sing N N 297 LEU CD2 HD21 sing N N 298 LEU CD2 HD22 sing N N 299 LEU CD2 HD23 sing N N 300 LEU OXT HXT sing N N 301 LYS N CA sing N N 302 LYS N H sing N N 303 LYS N H2 sing N N 304 LYS CA C sing N N 305 LYS CA CB sing N N 306 LYS CA HA sing N N 307 LYS C O doub N N 308 LYS C OXT sing N N 309 LYS CB CG sing N N 310 LYS CB HB2 sing N N 311 LYS CB HB3 sing N N 312 LYS CG CD sing N N 313 LYS CG HG2 sing N N 314 LYS CG HG3 sing N N 315 LYS CD CE sing N N 316 LYS CD HD2 sing N N 317 LYS CD HD3 sing N N 318 LYS CE NZ sing N N 319 LYS CE HE2 sing N N 320 LYS CE HE3 sing N N 321 LYS NZ HZ1 sing N N 322 LYS NZ HZ2 sing N N 323 LYS NZ HZ3 sing N N 324 LYS OXT HXT sing N N 325 MET N CA sing N N 326 MET N H sing N N 327 MET N H2 sing N N 328 MET CA C sing N N 329 MET CA CB sing N N 330 MET CA HA sing N N 331 MET C O doub N N 332 MET C OXT sing N N 333 MET CB CG sing N N 334 MET CB HB2 sing N N 335 MET CB HB3 sing N N 336 MET CG SD sing N N 337 MET CG HG2 sing N N 338 MET CG HG3 sing N N 339 MET SD CE sing N N 340 MET CE HE1 sing N N 341 MET CE HE2 sing N N 342 MET CE HE3 sing N N 343 MET OXT HXT sing N N 344 PHE N CA sing N N 345 PHE N H sing N N 346 PHE N H2 sing N N 347 PHE CA C sing N N 348 PHE CA CB sing N N 349 PHE CA HA sing N N 350 PHE C O doub N N 351 PHE C OXT sing N N 352 PHE CB CG sing N N 353 PHE CB HB2 sing N N 354 PHE CB HB3 sing N N 355 PHE CG CD1 doub Y N 356 PHE CG CD2 sing Y N 357 PHE CD1 CE1 sing Y N 358 PHE CD1 HD1 sing N N 359 PHE CD2 CE2 doub Y N 360 PHE CD2 HD2 sing N N 361 PHE CE1 CZ doub Y N 362 PHE CE1 HE1 sing N N 363 PHE CE2 CZ sing Y N 364 PHE CE2 HE2 sing N N 365 PHE CZ HZ sing N N 366 PHE OXT HXT sing N N 367 PRO N CA sing N N 368 PRO N CD sing N N 369 PRO N H sing N N 370 PRO CA C sing N N 371 PRO CA CB sing N N 372 PRO CA HA sing N N 373 PRO C O doub N N 374 PRO C OXT sing N N 375 PRO CB CG sing N N 376 PRO CB HB2 sing N N 377 PRO CB HB3 sing N N 378 PRO CG CD sing N N 379 PRO CG HG2 sing N N 380 PRO CG HG3 sing N N 381 PRO CD HD2 sing N N 382 PRO CD HD3 sing N N 383 PRO OXT HXT sing N N 384 SER N CA sing N N 385 SER N H sing N N 386 SER N H2 sing N N 387 SER CA C sing N N 388 SER CA CB sing N N 389 SER CA HA sing N N 390 SER C O doub N N 391 SER C OXT sing N N 392 SER CB OG sing N N 393 SER CB HB2 sing N N 394 SER CB HB3 sing N N 395 SER OG HG sing N N 396 SER OXT HXT sing N N 397 SO4 S O1 doub N N 398 SO4 S O2 doub N N 399 SO4 S O3 sing N N 400 SO4 S O4 sing N N 401 THR N CA sing N N 402 THR N H sing N N 403 THR N H2 sing N N 404 THR CA C sing N N 405 THR CA CB sing N N 406 THR CA HA sing N N 407 THR C O doub N N 408 THR C OXT sing N N 409 THR CB OG1 sing N N 410 THR CB CG2 sing N N 411 THR CB HB sing N N 412 THR OG1 HG1 sing N N 413 THR CG2 HG21 sing N N 414 THR CG2 HG22 sing N N 415 THR CG2 HG23 sing N N 416 THR OXT HXT sing N N 417 TRP N CA sing N N 418 TRP N H sing N N 419 TRP N H2 sing N N 420 TRP CA C sing N N 421 TRP CA CB sing N N 422 TRP CA HA sing N N 423 TRP C O doub N N 424 TRP C OXT sing N N 425 TRP CB CG sing N N 426 TRP CB HB2 sing N N 427 TRP CB HB3 sing N N 428 TRP CG CD1 doub Y N 429 TRP CG CD2 sing Y N 430 TRP CD1 NE1 sing Y N 431 TRP CD1 HD1 sing N N 432 TRP CD2 CE2 doub Y N 433 TRP CD2 CE3 sing Y N 434 TRP NE1 CE2 sing Y N 435 TRP NE1 HE1 sing N N 436 TRP CE2 CZ2 sing Y N 437 TRP CE3 CZ3 doub Y N 438 TRP CE3 HE3 sing N N 439 TRP CZ2 CH2 doub Y N 440 TRP CZ2 HZ2 sing N N 441 TRP CZ3 CH2 sing Y N 442 TRP CZ3 HZ3 sing N N 443 TRP CH2 HH2 sing N N 444 TRP OXT HXT sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 VAL N CA sing N N 470 VAL N H sing N N 471 VAL N H2 sing N N 472 VAL CA C sing N N 473 VAL CA CB sing N N 474 VAL CA HA sing N N 475 VAL C O doub N N 476 VAL C OXT sing N N 477 VAL CB CG1 sing N N 478 VAL CB CG2 sing N N 479 VAL CB HB sing N N 480 VAL CG1 HG11 sing N N 481 VAL CG1 HG12 sing N N 482 VAL CG1 HG13 sing N N 483 VAL CG2 HG21 sing N N 484 VAL CG2 HG22 sing N N 485 VAL CG2 HG23 sing N N 486 VAL OXT HXT sing N N 487 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETYL COENZYME *A' ACO 3 '3-PHOSPHOGLYCERIC ACID' 3PG 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2BSW _pdbx_initial_refinement_model.details 'PDB ENTRY 2BSW' #