HEADER LIGASE 13-FEB-07 2JGP TITLE STRUCTURE OF THE TYCC5-6 PCP-C BIDOMAIN OF THE TYROCIDINE SYNTHETASE TITLE 2 TYCC COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROCIDINE SYNTHETASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PCP-C BIDOMAIN OF TYCC MODULE 5 AND 6, RESIDUES 5116-5633; COMPND 5 SYNONYM: TYROCIDINE SYNTHETASE III, NON-RIBOSOMAL PEPTIDE SYNTHETASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1393; SOURCE 4 ATCC: 8185; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PREP4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE61 KEYWDS MULTIFUNCTIONAL ENZYME, ANTIBIOTIC BIOSYNTHESIS, CONDENSATION DOMAIN, KEYWDS 2 PEPTIDE BOND FORMATION, LIGASE, TYROCIDINE, ANTIBIOTICS, KEYWDS 3 PHOSPHOPANTETHEINE, NONRIBOSOMAL PEPTIDE SYNTHETASE, PEPTIDYL KEYWDS 4 CARRIER DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.SAMEL,G.SCHOENAFINGER,T.A.KNAPPE,M.A.MARAHIEL,L.-O.ESSEN REVDAT 5 24-JUL-19 2JGP 1 REMARK REVDAT 4 13-JUN-12 2JGP 1 AUTHOR JRNL REMARK REVDAT 3 13-JUL-11 2JGP 1 VERSN REVDAT 2 24-FEB-09 2JGP 1 VERSN REVDAT 1 30-OCT-07 2JGP 0 JRNL AUTH S.A.SAMEL,G.SCHOENAFINGER,T.A.KNAPPE,M.A.MARAHIEL,L.-O.ESSEN JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO A PEPTIDE JRNL TITL 2 BOND-FORMING BIDOMAIN FROM A NONRIBOSOMAL PEPTIDE JRNL TITL 3 SYNTHETASE. JRNL REF STRUCTURE V. 15 781 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17637339 JRNL DOI 10.1016/J.STR.2007.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 49809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3645 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4239 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2846 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5754 ; 0.963 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6934 ; 0.791 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 5.309 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;36.045 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;13.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4705 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 869 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 872 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2841 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2093 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2134 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2578 ; 0.461 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4176 ; 0.869 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1703 ; 1.065 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1576 ; 1.744 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0920 15.7580 48.8830 REMARK 3 T TENSOR REMARK 3 T11: -0.3766 T22: -0.3445 REMARK 3 T33: -0.3482 T12: -0.0318 REMARK 3 T13: -0.0156 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 3.0082 L22: 2.5156 REMARK 3 L33: 3.4696 L12: 0.8505 REMARK 3 L13: -1.1646 L23: -0.5788 REMARK 3 S TENSOR REMARK 3 S11: -0.2718 S12: 0.2811 S13: 0.0508 REMARK 3 S21: -0.0904 S22: 0.2516 S23: 0.2148 REMARK 3 S31: 0.2272 S32: -0.4396 S33: 0.0202 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 269 REMARK 3 RESIDUE RANGE : A 360 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8960 28.5690 41.7030 REMARK 3 T TENSOR REMARK 3 T11: -0.3326 T22: -0.4279 REMARK 3 T33: -0.2161 T12: 0.0149 REMARK 3 T13: 0.0076 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.5953 L22: 0.9789 REMARK 3 L33: 1.3326 L12: 0.7698 REMARK 3 L13: 0.4309 L23: -0.1506 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.1484 S13: -0.2810 REMARK 3 S21: -0.0969 S22: -0.0055 S23: -0.3249 REMARK 3 S31: 0.1790 S32: 0.1240 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 359 REMARK 3 RESIDUE RANGE : A 374 A 522 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4830 33.5300 64.6050 REMARK 3 T TENSOR REMARK 3 T11: -0.2431 T22: -0.2857 REMARK 3 T33: -0.2570 T12: -0.0573 REMARK 3 T13: 0.0309 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.8255 L22: 1.5069 REMARK 3 L33: 2.1361 L12: 1.2190 REMARK 3 L13: 0.3038 L23: 0.6070 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: -0.0496 S13: 0.0778 REMARK 3 S21: 0.1139 S22: -0.0916 S23: -0.0361 REMARK 3 S31: -0.1163 S32: -0.0970 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE DISORDERED REGION T456-G460 WAS MODELED REMARK 3 STEREOCHEMICALLY IN VERY WEAK DIFFERENCE ELECTRON DENSITY, BUT REMARK 3 ITS OCCUPANCY WAS SET TO ZERO. REMARK 4 REMARK 4 2JGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.808 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.050 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: SEMET DATA COLLECTED FOR MAD STRUCTURE DETERMINATION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5 MG PROTEIN/ML MIXED 1:1 WITH A REMARK 280 RESERVOIR SOLUTION CONTAINING 1.6 M AMMONIUM SULFATE, 0.04 M MES REMARK 280 (PH 6.5) AND 4% DIOXANE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.48450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.48650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.48650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.72675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.48650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.48650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.24225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.48650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.48650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.72675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.48650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.48650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.24225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.48450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2134 LIES ON A SPECIAL POSITION. REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 456 REMARK 475 ASP A 457 REMARK 475 GLU A 458 REMARK 475 THR A 459 REMARK 475 GLY A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 455 N ASP A 457 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 460 C GLN A 461 N -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 455 O - C - N ANGL. DEV. = -35.7 DEGREES REMARK 500 ASP A 457 CB - CG - OD1 ANGL. DEV. = 13.7 DEGREES REMARK 500 ASP A 457 CB - CG - OD2 ANGL. DEV. = -25.7 DEGREES REMARK 500 GLN A 461 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 42 -162.12 -129.73 REMARK 500 LEU A 133 120.83 58.76 REMARK 500 LEU A 203 46.10 -87.03 REMARK 500 GLU A 213 -79.70 -3.37 REMARK 500 ASP A 284 -150.79 -88.80 REMARK 500 ASN A 290 65.08 -111.15 REMARK 500 ARG A 361 67.98 -106.74 REMARK 500 ASP A 408 44.00 -89.25 REMARK 500 ALA A 419 -131.36 66.30 REMARK 500 ARG A 422 -78.18 -82.38 REMARK 500 ASP A 423 123.74 78.95 REMARK 500 LEU A 429 -42.12 71.96 REMARK 500 ASN A 438 64.80 -115.30 REMARK 500 SER A 439 -169.09 55.07 REMARK 500 THR A 440 95.30 168.34 REMARK 500 GLU A 441 122.97 27.82 REMARK 500 THR A 445 153.83 71.18 REMARK 500 ASP A 457 159.88 78.21 REMARK 500 GLU A 458 -160.01 57.87 REMARK 500 ARG A 475 -47.60 99.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 457 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 455 -36.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1527 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2021 O REMARK 620 2 GLN A 398 OE1 87.0 REMARK 620 3 HOH A2250 O 113.8 157.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1523 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1527 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DNY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PCP, A PROTOTYPE FOR THE PEPTIDYL CARRIER REMARK 900 DOMAINS OF MODULAR PEPTIDE SYNTHETASES DBREF 2JGP A 3 4 PDB 2JGP 2JGP 3 4 DBREF 2JGP A 5 522 UNP O30409 TYCC_BREPA 5116 5633 SEQADV 2JGP GLU A 183 UNP O30409 GLN 5294 CONFLICT SEQRES 1 A 520 ARG SER GLU TYR VAL ALA PRO ARG SER VAL TRP GLU ALA SEQRES 2 A 520 ARG LEU ALA GLN VAL TRP GLU GLN VAL LEU ASN VAL PRO SEQRES 3 A 520 GLN VAL GLY ALA LEU ASP ASP PHE PHE ALA LEU GLY GLY SEQRES 4 A 520 HIS SER LEU ARG ALA MET ARG VAL LEU SER SER MET HIS SEQRES 5 A 520 ASN GLU TYR GLN VAL ASP ILE PRO LEU ARG ILE LEU PHE SEQRES 6 A 520 GLU LYS PRO THR ILE GLN GLU LEU ALA ALA PHE ILE GLU SEQRES 7 A 520 GLU THR ALA LYS GLY ASN VAL PHE SER ILE GLU PRO VAL SEQRES 8 A 520 GLN LYS GLN ALA TYR TYR PRO VAL SER SER ALA GLN LYS SEQRES 9 A 520 ARG MET TYR ILE LEU ASP GLN PHE GLU GLY VAL GLY ILE SEQRES 10 A 520 SER TYR ASN MET PRO SER THR MET LEU ILE GLU GLY LYS SEQRES 11 A 520 LEU GLU ARG THR ARG VAL GLU ALA ALA PHE GLN ARG LEU SEQRES 12 A 520 ILE ALA ARG HIS GLU SER LEU ARG THR SER PHE ALA VAL SEQRES 13 A 520 VAL ASN GLY GLU PRO VAL GLN ASN ILE HIS GLU ASP VAL SEQRES 14 A 520 PRO PHE ALA LEU ALA TYR SER GLU VAL THR GLU GLU GLU SEQRES 15 A 520 ALA ARG GLU LEU VAL SER SER LEU VAL GLN PRO PHE ASP SEQRES 16 A 520 LEU GLU VAL ALA PRO LEU ILE ARG VAL SER LEU LEU LYS SEQRES 17 A 520 ILE GLY GLU ASP ARG TYR VAL LEU PHE THR ASP MET HIS SEQRES 18 A 520 HIS SER ILE SER ASP GLY VAL SER SER GLY ILE LEU LEU SEQRES 19 A 520 ALA GLU TRP VAL GLN LEU TYR GLN GLY ASP VAL LEU PRO SEQRES 20 A 520 GLU LEU ARG ILE GLN TYR LYS ASP PHE ALA VAL TRP GLN SEQRES 21 A 520 GLN GLU PHE SER GLN SER ALA ALA PHE HIS LYS GLN GLU SEQRES 22 A 520 ALA TYR TRP LEU GLN THR PHE ALA ASP ASP ILE PRO VAL SEQRES 23 A 520 LEU ASN LEU PRO THR ASP PHE THR ARG PRO SER THR GLN SEQRES 24 A 520 SER PHE ALA GLY ASP GLN CYS THR ILE GLY ALA GLY LYS SEQRES 25 A 520 ALA LEU THR GLU GLY LEU HIS GLN LEU ALA GLN ALA THR SEQRES 26 A 520 GLY THR THR LEU TYR MET VAL LEU LEU ALA ALA TYR ASN SEQRES 27 A 520 VAL LEU LEU ALA LYS TYR ALA GLY GLN GLU ASP ILE ILE SEQRES 28 A 520 VAL GLY THR PRO ILE THR GLY ARG SER HIS ALA ASP LEU SEQRES 29 A 520 GLU PRO ILE VAL GLY MET PHE VAL ASN THR LEU ALA MET SEQRES 30 A 520 ARG ASN LYS PRO GLN ARG GLU LYS THR PHE SER GLU PHE SEQRES 31 A 520 LEU GLN GLU VAL LYS GLN ASN ALA LEU ASP ALA TYR GLY SEQRES 32 A 520 HIS GLN ASP TYR PRO PHE GLU GLU LEU VAL GLU LYS LEU SEQRES 33 A 520 ALA ILE ALA ARG ASP LEU SER ARG ASN PRO LEU PHE ASP SEQRES 34 A 520 THR VAL PHE THR PHE GLN ASN SER THR GLU GLU VAL MET SEQRES 35 A 520 THR LEU PRO GLU CYS THR LEU ALA PRO PHE MET THR ASP SEQRES 36 A 520 GLU THR GLY GLN HIS ALA LYS PHE ASP LEU THR PHE SER SEQRES 37 A 520 ALA THR GLU GLU ARG GLU GLU MET THR ILE GLY VAL GLU SEQRES 38 A 520 TYR SER THR SER LEU PHE THR ARG GLU THR MET GLU ARG SEQRES 39 A 520 PHE SER ARG HIS PHE LEU THR ILE ALA ALA SER ILE VAL SEQRES 40 A 520 GLN ASN PRO HIS ILE ARG LEU GLY GLU ILE ASP MET LEU HET SO4 A1523 5 HET SO4 A1524 5 HET DIO A1525 6 HET DIO A1526 6 HET NA A1527 1 HETNAM SO4 SULFATE ION HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM NA SODIUM ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 DIO 2(C4 H8 O2) FORMUL 6 NA NA 1+ FORMUL 7 HOH *293(H2 O) HELIX 1 1 SER A 11 ASN A 26 1 16 HELIX 2 2 HIS A 42 GLN A 58 1 17 HELIX 3 3 PRO A 62 LYS A 69 1 8 HELIX 4 4 THR A 71 THR A 82 1 12 HELIX 5 5 SER A 102 GLU A 115 1 14 HELIX 6 6 GLU A 134 HIS A 149 1 16 HELIX 7 7 GLU A 150 LEU A 152 5 3 HELIX 8 8 THR A 181 LEU A 192 1 12 HELIX 9 9 HIS A 224 SER A 227 5 4 HELIX 10 10 ASP A 228 GLN A 244 1 17 HELIX 11 11 GLN A 254 SER A 266 1 13 HELIX 12 12 SER A 268 PHE A 282 1 15 HELIX 13 13 GLY A 313 GLY A 328 1 16 HELIX 14 14 THR A 330 GLY A 348 1 19 HELIX 15 15 HIS A 363 GLU A 367 5 5 HELIX 16 16 THR A 388 HIS A 406 1 19 HELIX 17 17 PRO A 410 LEU A 418 1 9 HELIX 18 18 THR A 490 ASN A 511 1 22 HELIX 19 19 LEU A 516 ILE A 519 5 4 SHEET 1 AA 3 TYR A 99 PRO A 100 0 SHEET 2 AA 3 GLU A 162 ILE A 167 -1 O GLN A 165 N TYR A 99 SHEET 3 AA 3 THR A 154 VAL A 159 -1 O SER A 155 N ASN A 166 SHEET 1 AB 5 ALA A 176 GLU A 179 0 SHEET 2 AB 5 ILE A 204 GLY A 212 1 O VAL A 206 N ALA A 176 SHEET 3 AB 5 ARG A 215 MET A 222 -1 O ARG A 215 N ILE A 211 SHEET 4 AB 5 SER A 125 GLY A 131 -1 O SER A 125 N THR A 220 SHEET 5 AB 5 CYS A 449 PRO A 453 -1 O THR A 450 N GLU A 130 SHEET 1 AC 4 GLY A 305 GLY A 311 0 SHEET 2 AC 4 MET A 478 SER A 485 -1 O ILE A 480 N ILE A 310 SHEET 3 AC 4 LEU A 467 GLU A 473 -1 O THR A 468 N GLU A 483 SHEET 4 AC 4 THR A 432 GLN A 437 1 O VAL A 433 N PHE A 469 SHEET 1 AD 2 ILE A 352 ILE A 358 0 SHEET 2 AD 2 ASN A 375 ASN A 381 -1 O ASN A 375 N ILE A 358 LINK NA NA A1527 O HOH A2021 1555 1555 2.34 LINK NA NA A1527 OE1 GLN A 398 1555 1555 2.20 LINK NA NA A1527 O HOH A2250 1555 1555 2.10 CISPEP 1 ALA A 201 PRO A 202 0 1.91 SITE 1 AC1 4 HIS A 224 ASP A 228 GLY A 229 HOH A2290 SITE 1 AC2 6 GLY A 40 HIS A 42 LEU A 44 ARG A 45 SITE 2 AC2 6 HOH A2291 HOH A2293 SITE 1 AC3 2 PHE A 142 LEU A 235 SITE 1 AC4 5 GLN A 29 VAL A 158 GLN A 325 ALA A 326 SITE 2 AC4 5 GLY A 328 SITE 1 AC5 4 GLN A 398 ASP A 402 HOH A2021 HOH A2250 CRYST1 84.973 84.973 164.969 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006062 0.00000