HEADER CELL ADHESION 19-FEB-07 2JH1 TITLE CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICRONEMAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 17-262; COMPND 5 SYNONYM: MIC1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ORIGAMI DE3; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS CELL ADHESION, MIC1, MICRONEME, MAR DOMAIN, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR T.M.A.BLUMENSCHEIN,N.FRIEDRICH,R.A.CHILDS,S.SAOUROS,E.P.CARPENTER, AUTHOR 2 M.A.CAMPANERO-RHODES,P.SIMPSON,T.KOUTROUKIDES,M.J.BLACKMAN,T.FEIZI, AUTHOR 3 D.SOLDATI-FAVRE,S.MATTHEWS REVDAT 3 30-JAN-19 2JH1 1 REMARK LINK REVDAT 2 24-FEB-09 2JH1 1 VERSN REVDAT 1 22-MAY-07 2JH1 0 JRNL AUTH T.M.A.BLUMENSCHEIN,N.FRIEDRICH,R.A.CHILDS,S.SAOUROS, JRNL AUTH 2 E.P.CARPENTER,M.A.CAMPANERO-RHODES,P.SIMPSON,W.CHAI, JRNL AUTH 3 T.KOUTROUKIDES,M.J.BLACKMAN,T.FEIZI,D.SOLDATI-FAVRE, JRNL AUTH 4 S.MATTHEWS JRNL TITL ATOMIC RESOLUTION INSIGHT INTO HOST CELL RECOGNITION BY JRNL TITL 2 TOXOPLASMA GONDII. JRNL REF EMBO J. V. 26 2808 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17491595 JRNL DOI 10.1038/SJ.EMBOJ.7601704 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 28518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1952 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2646 ; 1.622 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 6.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;32.907 ;23.736 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;13.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;12.270 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1551 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 902 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1304 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 175 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 106 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 1.099 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 1.735 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 760 ; 2.875 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 669 ; 4.444 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THERE IS DENSITY ON A TWO FOLD AXIS ADJACENT TO REMARK 3 RESIDUE 111 WHICH COULD BE DUE TO A PARTIALLY DISORDERED REMARK 3 GLYCEROL MOLECULE. REMARK 4 REMARK 4 2JH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (111) REMARK 200 OPTICS : COLLIMATOR, MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30153 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 18.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION, HANGING DROP 3.6 M REMARK 280 AMMONIUM ACETATE, 100 MM BIS-TRIS-PROPANE PH 7.6, PH 7.60, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.14950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.09600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.09600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.22425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.09600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.09600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.07475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.09600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.09600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 129.22425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.09600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.09600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.07475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.14950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2046 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2047 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2080 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2081 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 TYR A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 GLN A 80 OE1 NE2 REMARK 470 GLU A 81 CB CG CD OE1 OE2 REMARK 470 ASN A 82 CB CG OD1 ND2 REMARK 470 LYS A 117 CE NZ REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 GLN A 211 CD OE1 NE2 REMARK 470 LYS A 229 NZ REMARK 470 THR A 246 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 165 O HOH A 2112 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 230 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 -13.96 80.94 REMARK 500 GLN A 80 -159.69 -94.68 REMARK 500 ASN A 82 -58.09 84.46 REMARK 500 SER A 244 47.94 -84.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BVB RELATED DB: PDB REMARK 900 THE C-TERMINAL DOMAIN FROM MICRONEMAL PROTEIN 1 (MIC1) FROM REMARK 900 TOXOPLASMA GONDII REMARK 900 RELATED ID: 2JH7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 BOUND REMARK 900 TO 6'-SIALYL-N -ACETYLLACTOSAMINE REMARK 900 RELATED ID: 2JHD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 BOUND REMARK 900 TO 3'-SIALYL-N -ACETYLLACTOSAMINE DBREF 2JH1 A 1 246 UNP O00834 O00834_TOXGO 17 262 SEQRES 1 A 246 VAL GLY PRO GLU ALA TYR GLY GLU ALA SER HIS SER HIS SEQRES 2 A 246 SER PRO ALA SER GLY ARG TYR ILE GLN GLN MET LEU ASP SEQRES 3 A 246 GLN ARG CYS GLN GLU ILE ALA ALA GLU LEU CYS GLN SER SEQRES 4 A 246 GLY LEU ARG LYS MET CYS VAL PRO SER SER ARG ILE VAL SEQRES 5 A 246 ALA ARG ASN ALA VAL GLY ILE THR HIS GLN ASN THR LEU SEQRES 6 A 246 GLN TRP ARG CYS PHE ASP THR ALA SER LEU LEU GLU SER SEQRES 7 A 246 ASN GLN GLU ASN ASN GLY VAL ASN CYS VAL ASP ASP CYS SEQRES 8 A 246 GLY HIS THR ILE PRO CYS PRO GLY GLY VAL HIS ARG GLN SEQRES 9 A 246 ASN SER ASN HIS ALA THR ARG HIS GLU ILE LEU SER LYS SEQRES 10 A 246 LEU VAL GLU GLU GLY VAL GLN ARG PHE CYS SER PRO TYR SEQRES 11 A 246 GLN ALA SER ALA ASN LYS TYR CYS ASN ASP LYS PHE PRO SEQRES 12 A 246 GLY THR ILE ALA ARG ARG SER LYS GLY PHE GLY ASN ASN SEQRES 13 A 246 VAL GLU VAL ALA TRP ARG CYS TYR GLU LYS ALA SER LEU SEQRES 14 A 246 LEU TYR SER VAL TYR ALA GLU CYS ALA SER ASN CYS GLY SEQRES 15 A 246 THR THR TRP TYR CYS PRO GLY GLY ARG ARG GLY THR SER SEQRES 16 A 246 THR GLU LEU ASP LYS ARG HIS TYR THR GLU GLU GLU GLY SEQRES 17 A 246 ILE ARG GLN ALA ILE GLY SER VAL ASP SER PRO CYS SER SEQRES 18 A 246 GLU VAL GLU VAL CYS LEU PRO LYS ASP GLU ASN PRO PRO SEQRES 19 A 246 LEU CYS LEU ASP GLU SER GLY GLN ILE SER ARG THR HET ACT A1247 4 HET ACT A1248 4 HET ACT A1249 4 HET ACT A1250 4 HET ACT A1251 4 HET ACT A1252 4 HET ACT A1253 4 HET ACT A1254 4 HET ACT A1255 4 HET ACT A1256 4 HET ACT A1257 4 HET CL A1258 1 HET CL A1259 1 HET GOL A1260 6 HET ACT A1261 4 HET ACT A1262 4 HET ACT A1263 4 HET ACT A1264 4 HET GOL A1265 6 HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACT 15(C2 H3 O2 1-) FORMUL 13 CL 2(CL 1-) FORMUL 15 GOL 2(C3 H8 O3) FORMUL 21 HOH *181(H2 O) HELIX 1 1 TYR A 20 GLN A 38 1 19 HELIX 2 2 HIS A 112 PHE A 126 1 15 HELIX 3 3 PRO A 129 LYS A 141 1 13 HELIX 4 4 GLU A 206 GLY A 214 1 9 SHEET 1 AA 3 ILE A 51 ALA A 56 0 SHEET 2 AA 3 GLN A 66 ASP A 71 -1 O GLN A 66 N ALA A 56 SHEET 3 AA 3 HIS A 108 THR A 110 -1 O ALA A 109 N CYS A 69 SHEET 1 AB 3 THR A 94 VAL A 101 0 SHEET 2 AB 3 GLY A 84 VAL A 88 -1 O VAL A 85 N CYS A 97 SHEET 1 AC 3 THR A 145 GLY A 152 0 SHEET 2 AC 3 ASN A 155 GLU A 165 -1 O ASN A 155 N GLY A 152 SHEET 3 AC 3 HIS A 202 THR A 204 -1 O TYR A 203 N CYS A 163 SHEET 1 AD 2 LEU A 170 ALA A 178 0 SHEET 2 AD 2 THR A 184 GLY A 190 -1 O TRP A 185 N CYS A 177 SHEET 1 AE 2 VAL A 225 LEU A 227 0 SHEET 2 AE 2 LEU A 235 LEU A 237 -1 O LEU A 235 N LEU A 227 SSBOND 1 CYS A 29 CYS A 69 1555 1555 2.11 SSBOND 2 CYS A 37 CYS A 45 1555 1555 2.04 SSBOND 3 CYS A 87 CYS A 97 1555 1555 2.05 SSBOND 4 CYS A 91 CYS A 127 1555 1555 2.07 SSBOND 5 CYS A 138 CYS A 163 1555 1555 2.11 SSBOND 6 CYS A 177 CYS A 187 1555 1555 2.07 SSBOND 7 CYS A 181 CYS A 226 1555 1555 2.06 SSBOND 8 CYS A 220 CYS A 236 1555 1555 2.04 CISPEP 1 ASN A 232 PRO A 233 0 -2.37 SITE 1 AC1 5 HIS A 202 TYR A 203 THR A 204 GLN A 242 SITE 2 AC1 5 HOH A2168 SITE 1 AC2 5 GLN A 62 HIS A 108 ALA A 109 THR A 110 SITE 2 AC2 5 ARG A 111 SITE 1 AC3 6 PRO A 47 SER A 48 SER A 49 ARG A 210 SITE 2 AC3 6 ACT A1255 HOH A2027 SITE 1 AC4 4 ARG A 19 HOH A2169 HOH A2170 HOH A2171 SITE 1 AC5 3 ASN A 86 THR A 94 LYS A 166 SITE 1 AC6 3 MET A 24 ARG A 28 HOH A2181 SITE 1 AC7 5 LYS A 43 SER A 106 ASN A 107 HIS A 108 SITE 2 AC7 5 ACT A1264 SITE 1 AC8 6 PRO A 96 CYS A 97 PRO A 98 LEU A 170 SITE 2 AC8 6 TYR A 171 SER A 172 SITE 1 AC9 9 PRO A 47 SER A 48 TRP A 161 GLU A 176 SITE 2 AC9 9 CYS A 177 GLY A 182 THR A 183 THR A 184 SITE 3 AC9 9 ACT A1249 SITE 1 BC1 7 TYR A 130 CYS A 181 SER A 218 CYS A 226 SITE 2 BC1 7 HOH A2124 HOH A2172 HOH A2173 SITE 1 BC2 4 HIS A 93 ASN A 139 LYS A 166 HOH A2174 SITE 1 BC3 5 SER A 17 ASP A 89 ASP A 90 CYS A 187 SITE 2 BC3 5 GOL A1260 SITE 1 BC4 5 GLN A 62 ARG A 111 GLU A 113 ILE A 114 SITE 2 BC4 5 HOH A2085 SITE 1 BC5 6 ARG A 125 ASN A 155 ASN A 156 VAL A 157 SITE 2 BC5 6 GLU A 231 HOH A2159 SITE 1 BC6 4 CYS A 91 HIS A 93 ASN A 135 HOH A2177 SITE 1 BC7 9 SER A 150 LYS A 151 VAL A 173 TYR A 174 SITE 2 BC7 9 ALA A 175 ARG A 191 GOL A1265 HOH A2009 SITE 3 BC7 9 HOH A2178 SITE 1 BC8 7 GLU A 35 LEU A 36 SER A 39 LYS A 43 SITE 2 BC8 7 ARG A 111 ACT A1253 HOH A2179 SITE 1 BC9 10 SER A 17 CYS A 91 PHE A 126 SER A 128 SITE 2 BC9 10 TRP A 185 CYS A 187 ASP A 230 CL A1258 SITE 3 BC9 10 HOH A2158 HOH A2176 SITE 1 CC1 6 GLU A 31 TYR A 174 TYR A 186 ACT A1263 SITE 2 CC1 6 HOH A2180 HOH A2181 CRYST1 66.192 66.192 172.299 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005804 0.00000