HEADER HYDROLASE 19-FEB-07 2JH2 TITLE X-RAY CRYSTAL STRUCTURE OF A COHESIN-LIKE MODULE FROM CLOSTRIDIUM TITLE 2 PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE NAGJ; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 768-909; COMPND 5 SYNONYM: BETA-HEXOSAMINIDASE, N-ACETYL-BETA-GLUCOSAMINIDASE, BETA-N- COMPND 6 ACETYLHEXOSAMINIDASE, HEXOSAMINIDASE B, GH84; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 ATCC: 13124; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHITAYAT,K.GREGG,J.J.ADAMS,E.FICKO-BLEAN,E.A.BAYER,A.B.BORASTON, AUTHOR 2 S.P.SMITH REVDAT 6 08-MAY-24 2JH2 1 REMARK REVDAT 5 01-NOV-17 2JH2 1 REMARK REVDAT 4 13-JUL-11 2JH2 1 VERSN REVDAT 3 24-FEB-09 2JH2 1 VERSN REVDAT 2 18-DEC-07 2JH2 1 JRNL REVDAT 1 06-NOV-07 2JH2 0 JRNL AUTH S.CHITAYAT,K.GREGG,J.J.ADAMS,E.FICKO-BLEAN,E.A.BAYER, JRNL AUTH 2 A.B.BORASTON,S.P.SMITH JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A PUTATIVE NON- CELLULOSOMAL JRNL TITL 2 COHESIN MODULE FROM A CLOSTRIDIUM PERFRINGENS FAMILY 84 JRNL TITL 3 GLYCOSIDE HYDROLASE. JRNL REF J.MOL.BIOL. V. 375 20 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 17999932 JRNL DOI 10.1016/J.JMB.2007.10.031 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2951 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : -0.70000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.504 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.289 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2979 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4043 ; 1.077 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2228 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1093 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 131 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 0.356 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3132 ; 0.680 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 0.892 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 911 ; 1.679 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0643 79.2558 70.6025 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.1644 REMARK 3 T33: 0.0791 T12: 0.0430 REMARK 3 T13: -0.0019 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 3.1159 L22: 3.0097 REMARK 3 L33: 1.0014 L12: 1.3448 REMARK 3 L13: 0.0594 L23: 0.3063 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.0802 S13: 0.2441 REMARK 3 S21: -0.0102 S22: 0.1143 S23: 0.1129 REMARK 3 S31: -0.1196 S32: 0.0463 S33: -0.0703 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2698 75.9150 95.3789 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1083 REMARK 3 T33: 0.1167 T12: 0.1030 REMARK 3 T13: 0.0852 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 4.6044 L22: 1.8103 REMARK 3 L33: 1.7036 L12: 0.5569 REMARK 3 L13: 0.6002 L23: 0.3206 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.0457 S13: -0.1855 REMARK 3 S21: 0.0221 S22: 0.1713 S23: -0.2155 REMARK 3 S31: -0.2080 S32: -0.1054 S33: -0.2157 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 137 REMARK 3 ORIGIN FOR THE GROUP (A): -28.6246 104.1799 101.4376 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1198 REMARK 3 T33: 0.0629 T12: -0.0221 REMARK 3 T13: -0.0891 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 4.4114 L22: 3.7430 REMARK 3 L33: 2.9731 L12: 1.3946 REMARK 3 L13: 0.2312 L23: 0.5835 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.1899 S13: 0.3289 REMARK 3 S21: -0.1375 S22: -0.0134 S23: 0.0616 REMARK 3 S31: -0.2031 S32: 0.2250 S33: -0.0604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16275 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.38800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.82358 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 73.76967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.38800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.82358 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 73.76967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.38800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.82358 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 73.76967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.38800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.82358 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 73.76967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.38800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.82358 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 73.76967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.38800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.82358 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 73.76967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.64715 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 147.53933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 61.64715 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 147.53933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 61.64715 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 147.53933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 61.64715 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 147.53933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 61.64715 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 147.53933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 61.64715 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 147.53933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 LYS A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 140 REMARK 465 THR A 141 REMARK 465 SER A 142 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 LYS B 1 REMARK 465 LEU B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 141 REMARK 465 SER B 142 REMARK 465 GLY C -5 REMARK 465 SER C -4 REMARK 465 HIS C -3 REMARK 465 MET C -2 REMARK 465 ALA C -1 REMARK 465 SER C 0 REMARK 465 LYS C 1 REMARK 465 LEU C 2 REMARK 465 LYS C 3 REMARK 465 GLU C 4 REMARK 465 ALA C 5 REMARK 465 ALA C 6 REMARK 465 GLU C 7 REMARK 465 ILE C 138 REMARK 465 GLU C 139 REMARK 465 GLY C 140 REMARK 465 THR C 141 REMARK 465 SER C 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -44.77 146.45 REMARK 500 ASN A 115 55.33 38.95 REMARK 500 ASN B 52 36.12 -98.63 REMARK 500 ALA B 53 -44.48 -141.40 REMARK 500 ASP B 63 -60.91 -132.33 REMARK 500 ASP B 74 109.82 -55.11 REMARK 500 VAL C 57 -75.10 -100.32 REMARK 500 ASP C 63 114.98 143.14 REMARK 500 LYS C 76 103.86 -160.93 REMARK 500 THR C 85 -46.65 157.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 62 ASP A 63 144.84 REMARK 500 SER B 61 ASP B 62 147.40 REMARK 500 LEU C 84 THR C 85 -32.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CBI RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM PERFRINGENS NAGJ FAMILY 84 GLYCOSIDE REMARK 900 HYDROLASE, A HOMOLOGUE OF HUMAN O-GLCNACASE REMARK 900 RELATED ID: 2CBJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM PERFRINGENS NAGJ FAMILY 84 GLYCOSIDE REMARK 900 HYDROLASE, A HOMOLOGUE OF HUMAN O-GLCNACASE IN COMPLEX WITH PUGNAC REMARK 900 RELATED ID: 2J1A RELATED DB: PDB REMARK 900 STRUCTURE OF CBM32 FROM CLOSTRIDIUM PERFRINGENS BETA-N- REMARK 900 ACETYLHEXOSAMINIDASE GH84C IN COMPLEX WITH GALACTOSE REMARK 900 RELATED ID: 2J1E RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF CBM32 FROM A N-ACETYL-BETA- REMARK 900 HEXOSAMINIDASE IN COMPLEX WITH LACNAC REMARK 900 RELATED ID: 2J62 RELATED DB: PDB REMARK 900 STRUCTURE OF A BACTERIAL O-GLCNACASE IN COMPLEX WITH GLCNACSTATIN REMARK 900 RELATED ID: 2J7M RELATED DB: PDB REMARK 900 CHARACTERIZATION OF A FAMILY 32 CBM DBREF 2JH2 A -5 0 PDB 2JH2 2JH2 -5 0 DBREF 2JH2 A 1 142 UNP Q0TR53 OGA_CLOP1 768 909 DBREF 2JH2 B -5 0 PDB 2JH2 2JH2 -5 0 DBREF 2JH2 B 1 142 UNP Q0TR53 OGA_CLOP1 768 909 DBREF 2JH2 C -5 0 PDB 2JH2 2JH2 -5 0 DBREF 2JH2 C 1 142 UNP Q0TR53 OGA_CLOP1 768 909 SEQRES 1 A 148 GLY SER HIS MET ALA SER LYS LEU LYS GLU ALA ALA GLU SEQRES 2 A 148 VAL THR GLY SER VAL SER LEU GLU ALA LEU GLU GLU VAL SEQRES 3 A 148 GLN VAL GLY GLU ASN LEU GLU VAL GLY VAL GLY ILE ASP SEQRES 4 A 148 GLU LEU VAL ASN ALA GLU ALA PHE ALA TYR ASP PHE THR SEQRES 5 A 148 LEU ASN TYR ASP GLU ASN ALA PHE GLU TYR VAL GLU ALA SEQRES 6 A 148 ILE SER ASP ASP GLY VAL PHE VAL ASN ALA LYS LYS ILE SEQRES 7 A 148 GLU ASP GLY LYS VAL ARG VAL LEU VAL SER SER LEU THR SEQRES 8 A 148 GLY GLU PRO LEU PRO ALA LYS GLU VAL LEU ALA LYS VAL SEQRES 9 A 148 VAL LEU ARG ALA GLU ALA LYS ALA GLU GLY SER ASN LEU SEQRES 10 A 148 SER VAL THR ASN SER SER VAL GLY ASP GLY GLU GLY LEU SEQRES 11 A 148 VAL HIS GLU ILE ALA GLY THR GLU LYS THR VAL ASN ILE SEQRES 12 A 148 ILE GLU GLY THR SER SEQRES 1 B 148 GLY SER HIS MET ALA SER LYS LEU LYS GLU ALA ALA GLU SEQRES 2 B 148 VAL THR GLY SER VAL SER LEU GLU ALA LEU GLU GLU VAL SEQRES 3 B 148 GLN VAL GLY GLU ASN LEU GLU VAL GLY VAL GLY ILE ASP SEQRES 4 B 148 GLU LEU VAL ASN ALA GLU ALA PHE ALA TYR ASP PHE THR SEQRES 5 B 148 LEU ASN TYR ASP GLU ASN ALA PHE GLU TYR VAL GLU ALA SEQRES 6 B 148 ILE SER ASP ASP GLY VAL PHE VAL ASN ALA LYS LYS ILE SEQRES 7 B 148 GLU ASP GLY LYS VAL ARG VAL LEU VAL SER SER LEU THR SEQRES 8 B 148 GLY GLU PRO LEU PRO ALA LYS GLU VAL LEU ALA LYS VAL SEQRES 9 B 148 VAL LEU ARG ALA GLU ALA LYS ALA GLU GLY SER ASN LEU SEQRES 10 B 148 SER VAL THR ASN SER SER VAL GLY ASP GLY GLU GLY LEU SEQRES 11 B 148 VAL HIS GLU ILE ALA GLY THR GLU LYS THR VAL ASN ILE SEQRES 12 B 148 ILE GLU GLY THR SER SEQRES 1 C 148 GLY SER HIS MET ALA SER LYS LEU LYS GLU ALA ALA GLU SEQRES 2 C 148 VAL THR GLY SER VAL SER LEU GLU ALA LEU GLU GLU VAL SEQRES 3 C 148 GLN VAL GLY GLU ASN LEU GLU VAL GLY VAL GLY ILE ASP SEQRES 4 C 148 GLU LEU VAL ASN ALA GLU ALA PHE ALA TYR ASP PHE THR SEQRES 5 C 148 LEU ASN TYR ASP GLU ASN ALA PHE GLU TYR VAL GLU ALA SEQRES 6 C 148 ILE SER ASP ASP GLY VAL PHE VAL ASN ALA LYS LYS ILE SEQRES 7 C 148 GLU ASP GLY LYS VAL ARG VAL LEU VAL SER SER LEU THR SEQRES 8 C 148 GLY GLU PRO LEU PRO ALA LYS GLU VAL LEU ALA LYS VAL SEQRES 9 C 148 VAL LEU ARG ALA GLU ALA LYS ALA GLU GLY SER ASN LEU SEQRES 10 C 148 SER VAL THR ASN SER SER VAL GLY ASP GLY GLU GLY LEU SEQRES 11 C 148 VAL HIS GLU ILE ALA GLY THR GLU LYS THR VAL ASN ILE SEQRES 12 C 148 ILE GLU GLY THR SER FORMUL 4 HOH *78(H2 O) SHEET 1 AA 4 THR A 9 GLU A 15 0 SHEET 2 AA 4 ASN A 25 VAL A 36 -1 O GLY A 29 N GLU A 15 SHEET 3 AA 4 VAL A 94 ALA A 102 -1 N LEU A 95 O VAL A 30 SHEET 4 AA 4 PHE A 54 SER A 61 -1 O GLU A 55 N ARG A 101 SHEET 1 AB 6 GLU A 19 GLN A 21 0 SHEET 2 AB 6 THR A 131 ILE A 138 1 O ASN A 136 N VAL A 20 SHEET 3 AB 6 ALA A 106 GLY A 119 -1 O ALA A 106 N ILE A 137 SHEET 4 AB 6 ALA A 42 TYR A 49 -1 O ALA A 42 N GLY A 119 SHEET 5 AB 6 LYS A 76 SER A 83 -1 O VAL A 77 N LEU A 47 SHEET 6 AB 6 VAL A 65 GLU A 73 -1 O PHE A 66 N SER A 82 SHEET 1 AC 4 GLU A 19 GLN A 21 0 SHEET 2 AC 4 THR A 131 ILE A 138 1 O ASN A 136 N VAL A 20 SHEET 3 AC 4 ALA A 106 GLY A 119 -1 O ALA A 106 N ILE A 137 SHEET 4 AC 4 VAL A 125 GLU A 127 -1 O HIS A 126 N VAL A 118 SHEET 1 BA 4 THR B 9 GLU B 15 0 SHEET 2 BA 4 ASN B 25 VAL B 36 -1 O GLY B 29 N GLU B 15 SHEET 3 BA 4 VAL B 94 ALA B 102 -1 N LEU B 95 O VAL B 30 SHEET 4 BA 4 PHE B 54 SER B 61 -1 O GLU B 55 N ARG B 101 SHEET 1 BB 6 GLU B 19 GLN B 21 0 SHEET 2 BB 6 THR B 131 ILE B 138 1 O ASN B 136 N VAL B 20 SHEET 3 BB 6 ALA B 106 GLY B 119 -1 O ALA B 106 N ILE B 137 SHEET 4 BB 6 ALA B 42 TYR B 49 -1 O ALA B 42 N GLY B 119 SHEET 5 BB 6 LYS B 76 SER B 83 -1 O VAL B 77 N LEU B 47 SHEET 6 BB 6 VAL B 65 GLU B 73 -1 O PHE B 66 N SER B 82 SHEET 1 BC 4 GLU B 19 GLN B 21 0 SHEET 2 BC 4 THR B 131 ILE B 138 1 O ASN B 136 N VAL B 20 SHEET 3 BC 4 ALA B 106 GLY B 119 -1 O ALA B 106 N ILE B 137 SHEET 4 BC 4 VAL B 125 ILE B 128 -1 O HIS B 126 N VAL B 118 SHEET 1 CA 4 GLY C 10 GLU C 15 0 SHEET 2 CA 4 ASN C 25 LEU C 35 -1 O GLY C 29 N GLU C 15 SHEET 3 CA 4 VAL C 94 ALA C 102 -1 N LEU C 95 O VAL C 30 SHEET 4 CA 4 PHE C 54 SER C 61 -1 O GLU C 55 N ARG C 101 SHEET 1 CB 5 VAL C 65 GLU C 73 0 SHEET 2 CB 5 LYS C 76 SER C 83 -1 O LYS C 76 N GLU C 73 SHEET 3 CB 5 ALA C 42 ASN C 48 -1 O TYR C 43 N VAL C 81 SHEET 4 CB 5 ALA C 106 GLY C 119 -1 O SER C 112 N ASN C 48 SHEET 5 CB 5 THR C 131 ILE C 137 -1 O THR C 131 N VAL C 113 SHEET 1 CC 5 VAL C 65 GLU C 73 0 SHEET 2 CC 5 LYS C 76 SER C 83 -1 O LYS C 76 N GLU C 73 SHEET 3 CC 5 ALA C 42 ASN C 48 -1 O TYR C 43 N VAL C 81 SHEET 4 CC 5 ALA C 106 GLY C 119 -1 O SER C 112 N ASN C 48 SHEET 5 CC 5 VAL C 125 ILE C 128 -1 O HIS C 126 N VAL C 118 CISPEP 1 ASP B 62 ASP B 63 0 -3.64 CRYST1 106.776 106.776 221.309 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009365 0.005407 0.000000 0.00000 SCALE2 0.000000 0.010814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004519 0.00000