HEADER GENE REGULATION 17-MAR-99 2JHB TITLE CORE BINDING FACTOR BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CORE BINDING FACTOR BETA); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CBFB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: AR58; SOURCE 6 GENE: CBFB141; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: AR58; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PMG524; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGRXCBFB141; SOURCE 12 EXPRESSION_SYSTEM_GENE: GRXCBFB141 KEYWDS CORE BINDING FACTOR, TRANSCRIPTION FACTOR, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.HUANG,J.PENG,N.A.SPECK,J.H.BUSHWELLER REVDAT 5 27-DEC-23 2JHB 1 REMARK REVDAT 4 06-NOV-19 2JHB 1 JRNL REMARK ATOM REVDAT 3 24-FEB-09 2JHB 1 VERSN REVDAT 2 01-APR-03 2JHB 1 JRNL REVDAT 1 05-JUL-99 2JHB 0 JRNL AUTH X.HUANG,J.W.PENG,N.A.SPECK,J.H.BUSHWELLER JRNL TITL SOLUTION STRUCTURE OF CORE BINDING FACTOR BETA AND MAP OF JRNL TITL 2 THE CBF ALPHA BINDING SITE. JRNL REF NAT.STRUCT.BIOL. V. 6 624 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10404216 JRNL DOI 10.1038/10670 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.HUANG,B.E.CRUTE,C.SUN,Y.Y.TANG,J.J.KELLEY 3RD,A.F.LEWIS, REMARK 1 AUTH 2 K.L.HARTMAN,T.M.LAUE,N.A.SPECK,J.H.BUSHWELLER REMARK 1 TITL OVEREXPRESSION, PURIFICATION, AND BIOPHYSICAL REMARK 1 TITL 2 CHARACTERIZATION OF THE HETERODIMERIZATION DOMAIN OF THE REMARK 1 TITL 3 CORE-BINDING FACTOR BETA SUBUNIT. REMARK 1 REF J.BIOL.CHEM. V. 273 2480 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 9442100 REMARK 1 DOI 10.1074/JBC.273.4.2480 REMARK 1 REFERENCE 2 REMARK 1 AUTH X.HUANG,N.A.SPECK,J.H.BUSHWELLER REMARK 1 TITL COMPLETE HETERONUCLEAR NMR RESONANCE ASSIGNMENTS AND REMARK 1 TITL 2 SECONDARY STRUCTURE OF CORE BINDING FACTOR BETA (1-141). REMARK 1 REF J.BIOMOL.NMR V. 12 459 1998 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 9835054 REMARK 1 DOI 10.1023/A:1008306026814 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL,GUNTERT,BILLETER,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 2JHB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000674. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC; HNCACB; HN(CO)CACB; REMARK 210 HN(CA)HA; HNCO; CT-HSQC; C(CO) REMARK 210 NNH; H(CCO)NNH; HCCH-TOCSY; (HB) REMARK 210 CB(CGCD)HD; (HB)CB(CGCDCE)HE; REMARK 210 HNHA; HNHB; HACAHB REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 15N/ 13C AND 15N-LABELED RECOMBINANT CBFB(141) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 31 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 3 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 3 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 CYS A 109 CB - CA - C ANGL. DEV. = 10.1 DEGREES REMARK 500 8 ARG A 42 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 8 GLN A 43 C - N - CA ANGL. DEV. = 19.6 DEGREES REMARK 500 8 GLN A 43 CB - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 8 GLN A 43 CA - C - N ANGL. DEV. = -20.1 DEGREES REMARK 500 8 THR A 44 C - N - CA ANGL. DEV. = 25.3 DEGREES REMARK 500 13 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 13 PHE A 71 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 18 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 5 -3.68 67.62 REMARK 500 1 SER A 24 -168.36 56.55 REMARK 500 1 GLU A 26 101.84 -36.69 REMARK 500 1 GLU A 40 -66.74 132.22 REMARK 500 1 SER A 55 -159.96 -153.19 REMARK 500 1 GLN A 76 -65.80 -132.60 REMARK 500 1 ARG A 80 133.59 51.97 REMARK 500 1 GLN A 81 -106.79 -101.11 REMARK 500 1 TYR A 87 -71.29 -64.68 REMARK 500 1 ASP A 89 93.44 65.58 REMARK 500 1 GLU A 91 -16.04 66.37 REMARK 500 1 ARG A 92 122.55 111.17 REMARK 500 1 ALA A 94 77.69 -60.44 REMARK 500 1 LYS A 100 104.25 -170.90 REMARK 500 1 LEU A 105 -83.82 -73.11 REMARK 500 1 LEU A 121 40.07 75.06 REMARK 500 1 CYS A 126 -174.02 -177.57 REMARK 500 1 ALA A 141 29.72 -70.05 REMARK 500 2 SER A 2 82.55 -64.44 REMARK 500 2 MET A 3 63.07 33.82 REMARK 500 2 ARG A 5 -25.03 -140.77 REMARK 500 2 SER A 24 -158.96 54.92 REMARK 500 2 ARG A 25 -164.80 -79.05 REMARK 500 2 GLU A 26 106.25 -53.61 REMARK 500 2 GLU A 40 -77.74 -171.50 REMARK 500 2 SER A 55 -158.74 -157.93 REMARK 500 2 PRO A 72 -178.00 -64.52 REMARK 500 2 ALA A 73 48.18 -74.50 REMARK 500 2 GLN A 79 70.50 50.34 REMARK 500 2 GLN A 81 -80.32 -64.17 REMARK 500 2 TYR A 87 -70.83 -64.92 REMARK 500 2 ASP A 89 82.28 71.46 REMARK 500 2 ARG A 92 125.79 70.84 REMARK 500 2 ALA A 94 82.21 -64.87 REMARK 500 2 ASN A 106 -15.30 64.78 REMARK 500 2 HIS A 119 -79.71 -66.06 REMARK 500 2 CYS A 126 -173.12 -170.67 REMARK 500 2 ALA A 141 31.49 -72.56 REMARK 500 3 SER A 2 77.44 -155.36 REMARK 500 3 ARG A 5 -26.75 -142.87 REMARK 500 3 SER A 24 -161.51 56.19 REMARK 500 3 GLU A 26 101.73 -34.28 REMARK 500 3 ASP A 36 -9.12 -57.76 REMARK 500 3 GLU A 40 -69.78 -178.02 REMARK 500 3 GLU A 41 85.89 -170.00 REMARK 500 3 PRO A 72 -122.32 -72.36 REMARK 500 3 ALA A 73 62.61 -62.40 REMARK 500 3 TRP A 75 -163.84 -69.38 REMARK 500 3 PRO A 83 -175.95 -53.17 REMARK 500 3 ASP A 89 72.99 76.31 REMARK 500 REMARK 500 THIS ENTRY HAS 402 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.12 SIDE CHAIN REMARK 500 1 PHE A 34 0.10 SIDE CHAIN REMARK 500 1 TYR A 87 0.11 SIDE CHAIN REMARK 500 1 ARG A 120 0.12 SIDE CHAIN REMARK 500 2 ARG A 11 0.10 SIDE CHAIN REMARK 500 2 PHE A 34 0.09 SIDE CHAIN REMARK 500 2 HIS A 39 0.09 SIDE CHAIN REMARK 500 2 ARG A 42 0.09 SIDE CHAIN REMARK 500 3 PHE A 34 0.09 SIDE CHAIN REMARK 500 3 ARG A 85 0.08 SIDE CHAIN REMARK 500 4 PHE A 34 0.09 SIDE CHAIN REMARK 500 4 ARG A 45 0.08 SIDE CHAIN REMARK 500 5 HIS A 39 0.09 SIDE CHAIN REMARK 500 5 PHE A 46 0.08 SIDE CHAIN REMARK 500 5 ARG A 54 0.13 SIDE CHAIN REMARK 500 6 ARG A 21 0.09 SIDE CHAIN REMARK 500 6 TYR A 31 0.10 SIDE CHAIN REMARK 500 6 PHE A 34 0.09 SIDE CHAIN REMARK 500 7 ARG A 35 0.15 SIDE CHAIN REMARK 500 7 ARG A 42 0.16 SIDE CHAIN REMARK 500 7 TYR A 87 0.09 SIDE CHAIN REMARK 500 8 PHE A 34 0.10 SIDE CHAIN REMARK 500 8 ARG A 133 0.09 SIDE CHAIN REMARK 500 9 TYR A 31 0.07 SIDE CHAIN REMARK 500 9 ARG A 54 0.09 SIDE CHAIN REMARK 500 9 ARG A 80 0.09 SIDE CHAIN REMARK 500 9 TYR A 87 0.07 SIDE CHAIN REMARK 500 9 ARG A 92 0.09 SIDE CHAIN REMARK 500 9 ARG A 120 0.15 SIDE CHAIN REMARK 500 10 ARG A 92 0.08 SIDE CHAIN REMARK 500 10 HIS A 119 0.09 SIDE CHAIN REMARK 500 11 ARG A 5 0.09 SIDE CHAIN REMARK 500 11 ARG A 35 0.14 SIDE CHAIN REMARK 500 11 TYR A 87 0.07 SIDE CHAIN REMARK 500 12 TYR A 31 0.07 SIDE CHAIN REMARK 500 12 PHE A 34 0.10 SIDE CHAIN REMARK 500 12 ARG A 80 0.08 SIDE CHAIN REMARK 500 12 ARG A 133 0.10 SIDE CHAIN REMARK 500 13 TYR A 31 0.07 SIDE CHAIN REMARK 500 13 ARG A 51 0.08 SIDE CHAIN REMARK 500 13 ARG A 80 0.08 SIDE CHAIN REMARK 500 13 ARG A 92 0.12 SIDE CHAIN REMARK 500 14 ARG A 25 0.10 SIDE CHAIN REMARK 500 14 ARG A 51 0.11 SIDE CHAIN REMARK 500 14 ARG A 54 0.11 SIDE CHAIN REMARK 500 14 ARG A 133 0.11 SIDE CHAIN REMARK 500 15 TYR A 31 0.10 SIDE CHAIN REMARK 500 15 ARG A 42 0.09 SIDE CHAIN REMARK 500 15 ARG A 133 0.10 SIDE CHAIN REMARK 500 16 ARG A 51 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 69 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 8 GLN A 43 -17.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 2JHB A 3 143 UNP Q08024 PEBB_MOUSE 1 141 SEQRES 1 A 143 GLY SER MET PRO ARG VAL VAL PRO ASP GLN ARG SER LYS SEQRES 2 A 143 PHE GLU ASN GLU GLU PHE PHE ARG LYS LEU SER ARG GLU SEQRES 3 A 143 CYS GLU ILE LYS TYR THR GLY PHE ARG ASP ARG PRO HIS SEQRES 4 A 143 GLU GLU ARG GLN THR ARG PHE GLN ASN ALA CYS ARG ASP SEQRES 5 A 143 GLY ARG SER GLU ILE ALA PHE VAL ALA THR GLY THR ASN SEQRES 6 A 143 LEU SER LEU GLN PHE PHE PRO ALA SER TRP GLN GLY GLU SEQRES 7 A 143 GLN ARG GLN THR PRO SER ARG GLU TYR VAL ASP LEU GLU SEQRES 8 A 143 ARG GLU ALA GLY LYS VAL TYR LEU LYS ALA PRO MET ILE SEQRES 9 A 143 LEU ASN GLY VAL CYS VAL ILE TRP LYS GLY TRP ILE ASP SEQRES 10 A 143 LEU HIS ARG LEU ASP GLY MET GLY CYS LEU GLU PHE ASP SEQRES 11 A 143 GLU GLU ARG ALA GLN GLN GLU ASP ALA LEU ALA GLN GLN HELIX 1 H1 GLN A 10 ASN A 16 1 7 HELIX 2 H2 GLU A 18 LEU A 23 1 6 HELIX 3 H3 PHE A 34 ASP A 36 5 3 HELIX 4 H4 GLN A 43 ASP A 52 1 10 HELIX 5 H5 GLU A 131 LEU A 140 1 10 SHEET 1 S1 1 CYS A 27 TYR A 31 0 SHEET 1 S2 1 SER A 55 VAL A 60 0 SHEET 1 S3 1 ASN A 65 LEU A 68 0 SHEET 1 S4 1 LYS A 96 ILE A 104 0 SHEET 1 S5 1 VAL A 108 ASP A 117 0 SHEET 1 S6 1 ASP A 122 ASP A 130 0 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1