HEADER SUGAR BINDING PROTEIN 22-FEB-07 2JHM TITLE STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN AT NEUTRAL PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: FICOLIN-1; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 109-326; COMPND 5 SYNONYM: FICOLIN-A, FICOLIN-ALPHA, M-FICOLIN, COLLAGEN/ FIBRINOGEN COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: BAC-TO-BAC SYTEM KEYWDS LECTIN, COLLAGEN, ACIDIC PH, COMPLEMENT, GLYCOPROTEIN, POLYMORPHISM, KEYWDS 2 INNATE IMMUNITY, SUGAR-BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.GARLATTI,L.MARTIN,E.GOUT,J.B.REISER,G.J.ARLAUD,N.M.THIELENS, AUTHOR 2 C.GABORIAUD REVDAT 6 20-NOV-24 2JHM 1 REMARK REVDAT 5 13-DEC-23 2JHM 1 LINK REVDAT 4 03-APR-19 2JHM 1 SOURCE REVDAT 3 24-FEB-09 2JHM 1 VERSN REVDAT 2 18-DEC-07 2JHM 1 JRNL REVDAT 1 09-OCT-07 2JHM 0 JRNL AUTH V.GARLATTI,L.MARTIN,E.GOUT,J.B.REISER,T.FUJITA,G.J.ARLAUD, JRNL AUTH 2 N.M.THIELENS,C.GABORIAUD JRNL TITL STRUCTURAL BASIS FOR INNATE IMMUNE SENSING BY M-FICOLIN AND JRNL TITL 2 ITS CONTROL BY A PH-DEPENDENT CONFORMATIONAL SWITCH. JRNL REF J.BIOL.CHEM. V. 282 35814 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17897951 JRNL DOI 10.1074/JBC.M705741200 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 32973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1931 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1705 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1929 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2629 ; 1.187 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 6.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;30.382 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 311 ;12.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1565 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 914 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1298 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 0.706 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1872 ; 1.092 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 856 ; 1.576 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 757 ; 2.169 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36615 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J3G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.85450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.27796 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.53500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 36.85450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 21.27796 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.53500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 36.85450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 21.27796 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.53500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.55591 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 83.07000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.55591 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 83.07000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.55591 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 83.07000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN F 170 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN F 88 -178.31 -170.00 REMARK 500 MET F 133 -26.62 -152.31 REMARK 500 MET F 133 -2.51 -158.41 REMARK 500 ASP F 134 -1.66 -151.81 REMARK 500 ASP F 134 -1.66 -160.21 REMARK 500 ALA F 252 -97.86 -103.47 REMARK 500 ASN F 258 54.24 -155.25 REMARK 500 MET F 265 70.77 59.17 REMARK 500 ALA F 280 -82.43 -109.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE F 1299 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA F1298 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 233 OD1 REMARK 620 2 ASP F 233 OD2 51.1 REMARK 620 3 ASP F 235 OD1 76.4 116.4 REMARK 620 4 SER F 237 O 152.8 155.9 83.8 REMARK 620 5 SER F 239 O 116.8 83.4 93.3 82.4 REMARK 620 6 HOH F2106 O 76.2 111.8 81.8 82.7 164.8 REMARK 620 7 HOH F2107 O 113.0 86.8 153.0 77.8 103.6 76.4 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA F1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE F1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA F1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JHH RELATED DB: PDB REMARK 900 STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN AT ACIDIC PH REMARK 900 RELATED ID: 2JHI RELATED DB: PDB REMARK 900 STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN COMPLEXED WITH N-ACETYL-D- REMARK 900 GALACTOSAMINE REMARK 900 RELATED ID: 2JHK RELATED DB: PDB REMARK 900 STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN COMPLEXED WITH N-ACETYL-D- REMARK 900 GLUCOSAMINE REMARK 900 RELATED ID: 2JHL RELATED DB: PDB REMARK 900 STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN COMPLEXED WITH SIALIC ACID DBREF 2JHM F 80 297 UNP O00602 FCN1_HUMAN 109 326 SEQADV 2JHM THR F 177 UNP O00602 VAL 206 CONFLICT SEQRES 1 F 218 GLN SER CYS ALA THR GLY PRO ARG ASN CYS LYS ASP LEU SEQRES 2 F 218 LEU ASP ARG GLY TYR PHE LEU SER GLY TRP HIS THR ILE SEQRES 3 F 218 TYR LEU PRO ASP CYS ARG PRO LEU THR VAL LEU CYS ASP SEQRES 4 F 218 MET ASP THR ASP GLY GLY GLY TRP THR VAL PHE GLN ARG SEQRES 5 F 218 ARG MET ASP GLY SER VAL ASP PHE TYR ARG ASP TRP ALA SEQRES 6 F 218 ALA TYR LYS GLN GLY PHE GLY SER GLN LEU GLY GLU PHE SEQRES 7 F 218 TRP LEU GLY ASN ASP ASN ILE HIS ALA LEU THR ALA GLN SEQRES 8 F 218 GLY SER SER GLU LEU ARG THR ASP LEU VAL ASP PHE GLU SEQRES 9 F 218 GLY ASN HIS GLN PHE ALA LYS TYR LYS SER PHE LYS VAL SEQRES 10 F 218 ALA ASP GLU ALA GLU LYS TYR LYS LEU VAL LEU GLY ALA SEQRES 11 F 218 PHE VAL GLY GLY SER ALA GLY ASN SER LEU THR GLY HIS SEQRES 12 F 218 ASN ASN ASN PHE PHE SER THR LYS ASP GLN ASP ASN ASP SEQRES 13 F 218 VAL SER SER SER ASN CYS ALA GLU LYS PHE GLN GLY ALA SEQRES 14 F 218 TRP TRP TYR ALA ASP CYS HIS ALA SER ASN LEU ASN GLY SEQRES 15 F 218 LEU TYR LEU MET GLY PRO HIS GLU SER TYR ALA ASN GLY SEQRES 16 F 218 ILE ASN TRP SER ALA ALA LYS GLY TYR LYS TYR SER TYR SEQRES 17 F 218 LYS VAL SER GLU MET LYS VAL ARG PRO ALA HET CA F1298 1 HET EPE F1299 5 HET IPA F1300 4 HETNAM CA CALCIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETSYN EPE HEPES HETSYN IPA 2-PROPANOL FORMUL 2 CA CA 2+ FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 IPA C3 H8 O FORMUL 5 HOH *167(H2 O) HELIX 1 1 ASN F 88 ARG F 95 1 8 HELIX 2 2 ASP F 120 GLY F 124 5 5 HELIX 3 3 ASP F 142 GLY F 149 1 8 HELIX 4 4 GLY F 160 GLN F 170 1 11 HELIX 5 5 ASP F 198 LYS F 202 5 5 HELIX 6 6 LEU F 219 ASN F 223 5 5 HELIX 7 7 ASN F 240 PHE F 245 1 6 SHEET 1 FA 7 GLY F 101 TYR F 106 0 SHEET 2 FA 7 PRO F 112 ASP F 118 -1 O LEU F 113 N ILE F 105 SHEET 3 FA 7 TRP F 126 ARG F 132 -1 O TRP F 126 N ASP F 118 SHEET 4 FA 7 VAL F 289 PRO F 296 -1 O SER F 290 N ARG F 132 SHEET 5 FA 7 SER F 173 VAL F 180 -1 O GLU F 174 N ARG F 295 SHEET 6 FA 7 HIS F 186 TYR F 191 -1 O GLN F 187 N LEU F 179 SHEET 7 FA 7 PHE F 210 GLY F 212 -1 N VAL F 211 O LYS F 190 SHEET 1 FB 5 GLY F 101 TYR F 106 0 SHEET 2 FB 5 PRO F 112 ASP F 118 -1 O LEU F 113 N ILE F 105 SHEET 3 FB 5 TRP F 126 ARG F 132 -1 O TRP F 126 N ASP F 118 SHEET 4 FB 5 PHE F 157 TRP F 158 -1 O PHE F 157 N ARG F 131 SHEET 5 FB 5 PHE F 150 GLY F 151 -1 O PHE F 150 N TRP F 158 SHEET 1 FC 2 PHE F 194 VAL F 196 0 SHEET 2 FC 2 LEU F 205 LEU F 207 -1 O VAL F 206 N LYS F 195 SHEET 1 FD 2 SER F 257 ASN F 258 0 SHEET 2 FD 2 ASN F 276 TRP F 277 -1 O ASN F 276 N ASN F 258 SHEET 1 FE 2 GLY F 266 PRO F 267 0 SHEET 2 FE 2 TYR F 285 SER F 286 -1 O SER F 286 N GLY F 266 SSBOND 1 CYS F 82 CYS F 110 1555 1555 2.05 SSBOND 2 CYS F 89 CYS F 117 1555 1555 2.05 SSBOND 3 CYS F 241 CYS F 254 1555 1555 2.04 LINK OD1 ASP F 233 CA CA F1298 1555 1555 2.59 LINK OD2 ASP F 233 CA CA F1298 1555 1555 2.44 LINK OD1 ASP F 235 CA CA F1298 1555 1555 2.30 LINK O SER F 237 CA CA F1298 1555 1555 2.41 LINK O SER F 239 CA CA F1298 1555 1555 2.42 LINK CA CA F1298 O HOH F2106 1555 2445 2.43 LINK CA CA F1298 O HOH F2107 1555 2445 2.36 CISPEP 1 ASP F 253 CYS F 254 0 -5.23 SITE 1 AC1 6 ASP F 233 ASP F 235 SER F 237 SER F 239 SITE 2 AC1 6 HOH F2106 HOH F2107 SITE 1 AC2 6 LEU F 116 ASP F 118 ARG F 131 GLU F 291 SITE 2 AC2 6 HOH F2014 HOH F2064 SITE 1 AC3 5 PHE F 245 CYS F 254 HIS F 255 ALA F 272 SITE 2 AC3 5 HOH F2147 CRYST1 73.709 73.709 124.605 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013567 0.007833 0.000000 0.00000 SCALE2 0.000000 0.015666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008025 0.00000