HEADER INHIBITOR 23-FEB-07 2JHU TITLE CRYSTAL STRUCTURE OF RHOGDI E154A,E155A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GDP-DISSOCIATION INHIBITOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ISOPRENYL-BINDING DOMAIN, RESIDUES 66-201; COMPND 5 SYNONYM: RHO GDI 1, RHO-GDI ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGST-PARALLEL1 KEYWDS SURFACE ENTROPY REDUCTION, INHIBITOR, GTPASE ACTIVATION, CRYSTAL KEYWDS 2 ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,M.PINKOWSKA,Z.S.DEREWENDA REVDAT 4 13-DEC-23 2JHU 1 REMARK REVDAT 3 13-JUL-11 2JHU 1 VERSN REVDAT 2 24-FEB-09 2JHU 1 VERSN REVDAT 1 08-MAY-07 2JHU 0 JRNL AUTH D.R.COOPER,T.BOCZEK,K.GRELEWSKA,M.PINKOWSKA,M.SIKORSKA, JRNL AUTH 2 M.ZAWADZKI,Z.S.DEREWENDA JRNL TITL PROTEIN CRYSTALLIZATION BY SURFACE ENTROPY REDUCTION: JRNL TITL 2 OPTIMIZATION OF THE SER STRATEGY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 636 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452789 JRNL DOI 10.1107/S0907444907010931 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 62888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3950 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2266 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.421 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 9.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;30.832 ;23.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;14.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1664 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 926 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1517 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.275 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 0.993 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2220 ; 1.557 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 2.771 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 842 ; 4.180 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2695 -15.8249 38.2989 REMARK 3 T TENSOR REMARK 3 T11: -0.0703 T22: 0.0140 REMARK 3 T33: -0.0184 T12: -0.0115 REMARK 3 T13: 0.0296 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.3687 L22: 0.4926 REMARK 3 L33: 0.4718 L12: 0.2156 REMARK 3 L13: -0.5883 L23: 0.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.0824 S13: -0.0766 REMARK 3 S21: -0.0302 S22: 0.0011 S23: 0.1143 REMARK 3 S31: 0.0161 S32: 0.0058 S33: 0.1390 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2385 8.3739 47.1613 REMARK 3 T TENSOR REMARK 3 T11: -0.0521 T22: -0.0113 REMARK 3 T33: -0.0067 T12: 0.0420 REMARK 3 T13: -0.0208 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.6293 L22: 0.6905 REMARK 3 L33: 0.6093 L12: -0.2033 REMARK 3 L13: 0.3655 L23: -0.2638 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0940 S13: 0.1343 REMARK 3 S21: 0.0372 S22: -0.0013 S23: 0.0587 REMARK 3 S31: -0.0086 S32: 0.0688 S33: 0.0330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BXW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE 0.2 M SODIUM REMARK 280 CHLORIDE 0.1 M SODIUM CACODYLATE PH 6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.38750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.75149 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.10500 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.38750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.75149 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.10500 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.38750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.75149 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.10500 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.38750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.75149 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.10500 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.38750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.75149 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.10500 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.38750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.75149 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.10500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.50298 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 108.21000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.50298 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 108.21000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.50298 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 108.21000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.50298 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.21000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.50298 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 108.21000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.50298 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 108.21000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2063 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2033 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2059 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 153 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 154 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 153 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 154 TO ALA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 128 NE2 GLN B 130 2.10 REMARK 500 OG1 THR B 76 OE1 GLU B 87 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 111 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 66 19.46 -176.67 REMARK 500 ARG A 120 -46.50 -138.13 REMARK 500 ARG B 120 -39.31 -132.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 65 MET B 66 -113.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2065 DISTANCE = 5.84 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CC0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RHOA.GDP-RHOGDI COMPLEX REMARK 900 RELATED ID: 1FSO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRUNCATED HUMAN RHOGDI QUADRUPLE MUTANT REMARK 900 RELATED ID: 1FST RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRUNCATED HUMAN RHOGDI TRIPLE MUTANT REMARK 900 RELATED ID: 1FT0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRUNCATED HUMAN RHOGDI K113A MUTANT REMARK 900 RELATED ID: 1FT3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRUNCATED RHOGDI K141A MUTANT REMARK 900 RELATED ID: 1HH4 RELATED DB: PDB REMARK 900 RAC1-RHOGDI COMPLEX INVOLVED IN NADPH OXIDASE ACTIVATION REMARK 900 RELATED ID: 1KMT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI GLU(154,155) ALA MUTANT REMARK 900 RELATED ID: 1QVY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI K(199,200)R DOUBLE MUTANT REMARK 900 RELATED ID: 1RHO RELATED DB: PDB REMARK 900 STRUCTURE OF RHO GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR REMARK 900 RELATED ID: 2BXW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI LYS(135,138, 141)TYR MUTANT REMARK 900 RELATED ID: 2JHS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI K135H,K138H, K141H MUTANT REMARK 900 RELATED ID: 2JHT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI K135T,K138T, K141T MUTANT REMARK 900 RELATED ID: 2JHV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI E154A,E155A MUTANT REMARK 900 RELATED ID: 2JHW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI E155A, E157A MUTANT REMARK 900 RELATED ID: 2JHX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI E155H, E157H MUTANT REMARK 900 RELATED ID: 2JHY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI E155H, E157H MUTANT REMARK 900 RELATED ID: 2JHZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI E155S, E157S MUTANT REMARK 900 RELATED ID: 2JI0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHOGDI K138Y, K141Y MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATIONS ENGINEERED TO FACILITATE CRYSTALLIZATION DBREF 2JHU A 65 66 PDB 2JHU 2JHU 65 66 DBREF 2JHU A 67 202 UNP P52565 GDIR_HUMAN 66 201 DBREF 2JHU B 65 66 PDB 2JHU 2JHU 65 66 DBREF 2JHU B 67 202 UNP P52565 GDIR_HUMAN 66 201 SEQADV 2JHU ALA A 154 UNP P52565 GLU 153 ENGINEERED MUTATION SEQADV 2JHU ALA A 155 UNP P52565 GLU 154 ENGINEERED MUTATION SEQADV 2JHU ALA B 154 UNP P52565 GLU 153 ENGINEERED MUTATION SEQADV 2JHU ALA B 155 UNP P52565 GLU 154 ENGINEERED MUTATION SEQRES 1 A 138 ALA MET VAL PRO ASN VAL VAL VAL THR GLY LEU THR LEU SEQRES 2 A 138 VAL CYS SER SER ALA PRO GLY PRO LEU GLU LEU ASP LEU SEQRES 3 A 138 THR GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL SEQRES 4 A 138 LEU LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE SEQRES 5 A 138 ARG VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE SEQRES 6 A 138 GLN HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR SEQRES 7 A 138 ASP TYR MET VAL GLY SER TYR GLY PRO ARG ALA ALA ALA SEQRES 8 A 138 TYR GLU PHE LEU THR PRO VAL GLU GLU ALA PRO LYS GLY SEQRES 9 A 138 MET LEU ALA ARG GLY SER TYR SER ILE LYS SER ARG PHE SEQRES 10 A 138 THR ASP ASP ASP LYS THR ASP HIS LEU SER TRP GLU TRP SEQRES 11 A 138 ASN LEU THR ILE LYS LYS ASP TRP SEQRES 1 B 138 ALA MET VAL PRO ASN VAL VAL VAL THR GLY LEU THR LEU SEQRES 2 B 138 VAL CYS SER SER ALA PRO GLY PRO LEU GLU LEU ASP LEU SEQRES 3 B 138 THR GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL SEQRES 4 B 138 LEU LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE SEQRES 5 B 138 ARG VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE SEQRES 6 B 138 GLN HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR SEQRES 7 B 138 ASP TYR MET VAL GLY SER TYR GLY PRO ARG ALA ALA ALA SEQRES 8 B 138 TYR GLU PHE LEU THR PRO VAL GLU GLU ALA PRO LYS GLY SEQRES 9 B 138 MET LEU ALA ARG GLY SER TYR SER ILE LYS SER ARG PHE SEQRES 10 B 138 THR ASP ASP ASP LYS THR ASP HIS LEU SER TRP GLU TRP SEQRES 11 B 138 ASN LEU THR ILE LYS LYS ASP TRP HET SO4 A1203 5 HET SO4 A1204 5 HET SO4 B1203 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *380(H2 O) HELIX 1 1 ASP A 93 GLN A 100 5 8 HELIX 2 2 GLY A 168 ARG A 172 5 5 HELIX 3 3 ASP B 93 GLN B 100 5 8 SHEET 1 AA 4 GLU A 87 ASP A 89 0 SHEET 2 AA 4 VAL A 70 VAL A 78 -1 O LEU A 75 N LEU A 88 SHEET 3 AA 4 GLU A 109 VAL A 118 -1 O ARG A 111 N VAL A 78 SHEET 4 AA 4 GLU A 163 GLU A 164 -1 O GLU A 163 N TYR A 110 SHEET 1 AB 4 GLU A 87 ASP A 89 0 SHEET 2 AB 4 VAL A 70 VAL A 78 -1 O LEU A 75 N LEU A 88 SHEET 3 AB 4 GLU A 109 VAL A 118 -1 O ARG A 111 N VAL A 78 SHEET 4 AB 4 TYR A 156 LEU A 159 -1 O TYR A 156 N PHE A 116 SHEET 1 AC 5 PHE A 102 LYS A 105 0 SHEET 2 AC 5 LEU A 190 LYS A 199 1 O ASN A 195 N PHE A 102 SHEET 3 AC 5 GLY A 173 THR A 182 -1 O GLY A 173 N ILE A 198 SHEET 4 AC 5 VAL A 123 ARG A 134 -1 O LYS A 127 N THR A 182 SHEET 5 AC 5 VAL A 137 TYR A 149 -1 O VAL A 137 N ARG A 134 SHEET 1 BA 4 GLU B 87 ASP B 89 0 SHEET 2 BA 4 VAL B 70 VAL B 78 -1 O LEU B 75 N LEU B 88 SHEET 3 BA 4 GLU B 109 VAL B 118 -1 O ARG B 111 N VAL B 78 SHEET 4 BA 4 GLU B 163 GLU B 164 -1 O GLU B 163 N TYR B 110 SHEET 1 BB 4 GLU B 87 ASP B 89 0 SHEET 2 BB 4 VAL B 70 VAL B 78 -1 O LEU B 75 N LEU B 88 SHEET 3 BB 4 GLU B 109 VAL B 118 -1 O ARG B 111 N VAL B 78 SHEET 4 BB 4 TYR B 156 LEU B 159 -1 O TYR B 156 N PHE B 116 SHEET 1 BC 5 PHE B 102 LYS B 105 0 SHEET 2 BC 5 LEU B 190 LYS B 199 1 O ASN B 195 N PHE B 102 SHEET 3 BC 5 GLY B 173 THR B 182 -1 O GLY B 173 N ILE B 198 SHEET 4 BC 5 VAL B 123 ARG B 134 -1 O LYS B 127 N THR B 182 SHEET 5 BC 5 VAL B 137 TYR B 149 -1 O VAL B 137 N ARG B 134 CISPEP 1 ALA A 65 MET A 66 0 1.41 SITE 1 AC1 3 ARG A 111 HOH A2198 HOH A2199 SITE 1 AC2 5 PRO A 68 ASN A 69 HOH A2094 HOH A2200 SITE 2 AC2 5 HOH A2201 SITE 1 AC3 3 HOH A2019 ARG B 111 HOH B2179 CRYST1 130.775 130.775 162.315 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007647 0.004415 0.000000 0.00000 SCALE2 0.000000 0.008830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006161 0.00000