HEADER TRANSFERASE 26-FEB-07 2JI5 TITLE STRUCTURE OF UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE; COMPND 5 EC: 2.7.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS AMINO ACID KINASE, PHOSPHOTRANSPHERASE, ALLOSTERIC REGULATION, KEYWDS 2 PYRIMIDINE METABOLISM, KINASE, UMP KINASE, TRANSFERASE, URIDYLATE KEYWDS 3 KINASE, PYRIMIDINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.MARCO-MARIN,V.RUBIO REVDAT 3 13-DEC-23 2JI5 1 REMARK REVDAT 2 24-FEB-09 2JI5 1 VERSN REVDAT 1 16-OCT-07 2JI5 0 JRNL AUTH C.MARCO-MARIN,V.RUBIO JRNL TITL THE STRUCTURE OF UMP KINASE FROM PYROCOCCUS FURIOSUS JRNL TITL 2 COMPLEXED WITH UTP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.600 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.460 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SILICON (111) CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 72.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BMU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.47150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.47150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.47150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.47150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.47150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.47150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.47150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.47150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.47150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.47150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.47150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.47150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.47150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.47150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.47150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.47150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.47150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.47150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.47150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.47150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.47150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.47150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.47150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.47150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.47150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.47150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 144.94300 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 144.94300 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 144.94300 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 144.94300 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 195 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 195 TO THR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 174 REMARK 465 ILE A 175 REMARK 465 GLU A 176 REMARK 465 LYS A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 SER B 998 REMARK 465 PRO B 150 REMARK 465 LYS B 151 REMARK 465 LYS B 152 REMARK 465 ASP B 153 REMARK 465 PRO B 154 REMARK 465 LYS B 173 REMARK 465 GLY B 174 REMARK 465 ILE B 175 REMARK 465 GLU B 176 REMARK 465 LYS B 177 REMARK 465 ALA B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 HIS B 999 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 THR B 155 OG1 CG2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 SER B 182 OG REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -67.47 -140.74 REMARK 500 ARG A 85 -132.77 52.36 REMARK 500 THR A 140 -168.77 -114.77 REMARK 500 ASP A 149 108.10 -59.01 REMARK 500 LYS A 152 -61.49 -125.44 REMARK 500 GLU B 15 -62.99 -127.05 REMARK 500 ARG B 85 -140.77 50.04 REMARK 500 THR B 114 -35.62 -137.31 REMARK 500 ALA B 148 179.25 179.14 REMARK 500 ALA B 156 -149.17 -82.74 REMARK 500 VAL B 183 -51.26 53.07 REMARK 500 ASP B 209 70.28 -154.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A2000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BMU RELATED DB: PDB REMARK 900 UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ITS SUBSTRATE REMARK 900 UMP AND ITS SUBSTRATE ANALOG AMPPNP REMARK 900 RELATED ID: 2BRI RELATED DB: PDB REMARK 900 UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ITS SUBSTRATE REMARK 900 ANALOG AMPPNP REMARK 900 RELATED ID: 2BRX RELATED DB: PDB REMARK 900 UMP KINASE FROM PYROCOCCUS FURIOSUS WITHOUT LIGANDS DBREF 2JI5 A 998 999 PDB 2JI5 2JI5 998 999 DBREF 2JI5 A 1 225 UNP Q8U122 PYRH_PYRFU 1 225 DBREF 2JI5 B 998 999 PDB 2JI5 2JI5 998 999 DBREF 2JI5 B 1 225 UNP Q8U122 PYRH_PYRFU 1 225 SEQADV 2JI5 THR A 195 UNP Q8U122 SER 195 ENGINEERED MUTATION SEQADV 2JI5 THR B 195 UNP Q8U122 SER 195 ENGINEERED MUTATION SEQRES 1 A 227 SER HIS MET ARG ILE VAL PHE ASP ILE GLY GLY SER VAL SEQRES 2 A 227 LEU VAL PRO GLU ASN PRO ASP ILE ASP PHE ILE LYS GLU SEQRES 3 A 227 ILE ALA TYR GLN LEU THR LYS VAL SER GLU ASP HIS GLU SEQRES 4 A 227 VAL ALA VAL VAL VAL GLY GLY GLY LYS LEU ALA ARG LYS SEQRES 5 A 227 TYR ILE GLU VAL ALA GLU LYS PHE ASN SER SER GLU THR SEQRES 6 A 227 PHE LYS ASP PHE ILE GLY ILE GLN ILE THR ARG ALA ASN SEQRES 7 A 227 ALA MET LEU LEU ILE ALA ALA LEU ARG GLU LYS ALA TYR SEQRES 8 A 227 PRO VAL VAL VAL GLU ASP PHE TRP GLU ALA TRP LYS ALA SEQRES 9 A 227 VAL GLN LEU LYS LYS ILE PRO VAL MET GLY GLY THR HIS SEQRES 10 A 227 PRO GLY HIS THR THR ASP ALA VAL ALA ALA LEU LEU ALA SEQRES 11 A 227 GLU PHE LEU LYS ALA ASP LEU LEU VAL VAL ILE THR ASN SEQRES 12 A 227 VAL ASP GLY VAL TYR THR ALA ASP PRO LYS LYS ASP PRO SEQRES 13 A 227 THR ALA LYS LYS ILE LYS LYS MET LYS PRO GLU GLU LEU SEQRES 14 A 227 LEU GLU ILE VAL GLY LYS GLY ILE GLU LYS ALA GLY SER SEQRES 15 A 227 SER SER VAL ILE ASP PRO LEU ALA ALA LYS ILE ILE ALA SEQRES 16 A 227 ARG THR GLY ILE LYS THR ILE VAL ILE GLY LYS GLU ASP SEQRES 17 A 227 ALA LYS ASP LEU PHE ARG VAL ILE LYS GLY ASP HIS ASN SEQRES 18 A 227 GLY THR THR ILE GLU PRO SEQRES 1 B 227 SER HIS MET ARG ILE VAL PHE ASP ILE GLY GLY SER VAL SEQRES 2 B 227 LEU VAL PRO GLU ASN PRO ASP ILE ASP PHE ILE LYS GLU SEQRES 3 B 227 ILE ALA TYR GLN LEU THR LYS VAL SER GLU ASP HIS GLU SEQRES 4 B 227 VAL ALA VAL VAL VAL GLY GLY GLY LYS LEU ALA ARG LYS SEQRES 5 B 227 TYR ILE GLU VAL ALA GLU LYS PHE ASN SER SER GLU THR SEQRES 6 B 227 PHE LYS ASP PHE ILE GLY ILE GLN ILE THR ARG ALA ASN SEQRES 7 B 227 ALA MET LEU LEU ILE ALA ALA LEU ARG GLU LYS ALA TYR SEQRES 8 B 227 PRO VAL VAL VAL GLU ASP PHE TRP GLU ALA TRP LYS ALA SEQRES 9 B 227 VAL GLN LEU LYS LYS ILE PRO VAL MET GLY GLY THR HIS SEQRES 10 B 227 PRO GLY HIS THR THR ASP ALA VAL ALA ALA LEU LEU ALA SEQRES 11 B 227 GLU PHE LEU LYS ALA ASP LEU LEU VAL VAL ILE THR ASN SEQRES 12 B 227 VAL ASP GLY VAL TYR THR ALA ASP PRO LYS LYS ASP PRO SEQRES 13 B 227 THR ALA LYS LYS ILE LYS LYS MET LYS PRO GLU GLU LEU SEQRES 14 B 227 LEU GLU ILE VAL GLY LYS GLY ILE GLU LYS ALA GLY SER SEQRES 15 B 227 SER SER VAL ILE ASP PRO LEU ALA ALA LYS ILE ILE ALA SEQRES 16 B 227 ARG THR GLY ILE LYS THR ILE VAL ILE GLY LYS GLU ASP SEQRES 17 B 227 ALA LYS ASP LEU PHE ARG VAL ILE LYS GLY ASP HIS ASN SEQRES 18 B 227 GLY THR THR ILE GLU PRO HET UTP A2000 29 HET UTP B2000 29 HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 3 UTP 2(C9 H15 N2 O15 P3) FORMUL 5 HOH *10(H2 O) HELIX 1 1 GLY A 8 VAL A 13 1 6 HELIX 2 2 ASP A 18 HIS A 36 1 19 HELIX 3 3 GLY A 44 PHE A 58 1 15 HELIX 4 4 SER A 61 ARG A 85 1 25 HELIX 5 5 ASP A 95 LEU A 105 1 11 HELIX 6 6 THR A 119 LYS A 132 1 14 HELIX 7 7 LYS A 163 LYS A 173 1 11 HELIX 8 8 ASP A 185 GLY A 196 1 12 HELIX 9 9 GLY A 203 LYS A 208 1 6 HELIX 10 10 ASP A 209 ILE A 214 1 6 HELIX 11 11 GLY B 8 VAL B 13 1 6 HELIX 12 12 ASP B 18 HIS B 36 1 19 HELIX 13 13 GLY B 44 PHE B 58 1 15 HELIX 14 14 SER B 61 ARG B 85 1 25 HELIX 15 15 ASP B 95 LEU B 105 1 11 HELIX 16 16 THR B 119 LYS B 132 1 14 HELIX 17 17 LYS B 163 VAL B 171 1 9 HELIX 18 18 ASP B 185 GLY B 196 1 12 HELIX 19 19 GLU B 205 LYS B 208 5 4 HELIX 20 20 ASP B 209 ILE B 214 1 6 SHEET 1 AA 7 VAL A 110 MET A 111 0 SHEET 2 AA 7 GLU A 37 VAL A 42 1 O VAL A 40 N MET A 111 SHEET 3 AA 7 ARG A 2 ILE A 7 1 O ILE A 3 N ALA A 39 SHEET 4 AA 7 LEU A 135 ILE A 139 1 O LEU A 135 N VAL A 4 SHEET 5 AA 7 THR A 199 ILE A 202 1 O ILE A 200 N VAL A 138 SHEET 6 AA 7 THR A 221 ILE A 223 -1 O THR A 221 N VAL A 201 SHEET 7 AA 7 LYS A 161 MET A 162 1 N MET A 162 O THR A 222 SHEET 1 BA 7 VAL B 110 MET B 111 0 SHEET 2 BA 7 GLU B 37 VAL B 42 1 O VAL B 40 N MET B 111 SHEET 3 BA 7 ARG B 2 ILE B 7 1 O ILE B 3 N ALA B 39 SHEET 4 BA 7 LEU B 135 THR B 140 1 O LEU B 135 N VAL B 4 SHEET 5 BA 7 THR B 199 GLY B 203 1 O ILE B 200 N VAL B 138 SHEET 6 BA 7 THR B 221 ILE B 223 -1 O THR B 221 N VAL B 201 SHEET 7 BA 7 LYS B 161 MET B 162 1 N MET B 162 O THR B 222 SITE 1 AC1 18 GLY B 43 GLY B 44 ARG B 49 ILE B 52 SITE 2 AC1 18 ASP B 66 GLY B 69 ILE B 70 GLY B 113 SITE 3 AC1 18 THR B 114 HIS B 115 PRO B 116 HIS B 118 SITE 4 AC1 18 THR B 119 THR B 120 VAL B 123 HOH B2001 SITE 5 AC1 18 HOH B2003 HOH B2004 SITE 1 AC2 16 GLY A 43 GLY A 44 ARG A 49 ASP A 66 SITE 2 AC2 16 GLY A 69 ILE A 70 GLY A 113 THR A 114 SITE 3 AC2 16 HIS A 115 HIS A 118 THR A 119 THR A 120 SITE 4 AC2 16 VAL A 123 HOH A2001 HOH A2005 HOH A2006 CRYST1 144.943 144.943 144.943 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006899 0.00000 MTRIX1 1 -0.445180 0.849250 0.283880 -28.69535 1 MTRIX2 1 0.847440 0.297180 0.439920 8.42403 1 MTRIX3 1 0.289240 0.436410 -0.851990 30.45067 1