HEADER HYDROLASE 28-JUN-07 2JIG TITLE CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII PROLYL-4 HYDROXYLASE TITLE 2 TYPE I COMPLEXED WITH ZINC AND PYRIDINE-2,4-DICARBOXYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL-4 HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINALLY TRUNCATED CONSTRUCT STARTING FROM G30 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 STRAIN: CC125MT137C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI(DE3) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.KOSKI,R.HIETA,C.BOLLNER,K.I.KIVIRIKKO,J.MYLLYHARJU,R.K.WIERENGA REVDAT 6 13-DEC-23 2JIG 1 LINK REVDAT 5 24-JUL-19 2JIG 1 REMARK REVDAT 4 13-JUL-11 2JIG 1 VERSN REVDAT 3 24-FEB-09 2JIG 1 VERSN REVDAT 2 25-DEC-07 2JIG 1 JRNL REVDAT 1 30-OCT-07 2JIG 0 JRNL AUTH M.K.KOSKI,R.HIETA,C.BOLLNER,K.I.KIVIRIKKO,J.MYLLYHARJU, JRNL AUTH 2 R.K.WIERENGA JRNL TITL THE ACTIVE SITE OF AN ALGAL PROLYL 4-HYDROXYLASE HAS A LARGE JRNL TITL 2 STRUCTURAL PLASTICITY. JRNL REF J.BIOL.CHEM. V. 282 37112 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17940281 JRNL DOI 10.1074/JBC.M706554200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0028 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3334 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4518 ; 1.241 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;31.804 ;24.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;14.051 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.433 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2535 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1600 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2199 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 397 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2090 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3281 ; 1.066 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1439 ; 1.667 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1237 ; 2.535 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1230 21.5640 -18.8730 REMARK 3 T TENSOR REMARK 3 T11: -0.0117 T22: -0.0770 REMARK 3 T33: -0.1227 T12: 0.0108 REMARK 3 T13: -0.0059 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.4845 L22: 0.8558 REMARK 3 L33: 1.5005 L12: 0.0420 REMARK 3 L13: 0.3290 L23: 0.3202 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: -0.0321 S13: 0.0150 REMARK 3 S21: -0.0417 S22: -0.0548 S23: 0.0179 REMARK 3 S31: -0.0424 S32: -0.0554 S33: 0.0639 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5300 34.5010 11.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.0225 T22: -0.0075 REMARK 3 T33: -0.1485 T12: -0.0137 REMARK 3 T13: -0.0071 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2248 L22: 1.5164 REMARK 3 L33: 1.0660 L12: -0.1727 REMARK 3 L13: -0.1691 L23: 0.1522 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.1945 S13: 0.0101 REMARK 3 S21: 0.1550 S22: -0.0078 S23: 0.0841 REMARK 3 S31: 0.0126 S32: -0.0710 S33: 0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290033065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 152984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V4A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.42500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.42500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 PHE A 31 REMARK 465 GLY A 32 REMARK 465 GLU A 33 REMARK 465 LEU A 34 REMARK 465 LYS A 35 REMARK 465 ARG A 252 REMARK 465 HIS A 253 REMARK 465 GLY B 30 REMARK 465 PHE B 31 REMARK 465 GLY B 32 REMARK 465 GLU B 33 REMARK 465 LEU B 34 REMARK 465 LYS B 35 REMARK 465 VAL B 75 REMARK 465 LYS B 76 REMARK 465 SER B 77 REMARK 465 SER B 78 REMARK 465 VAL B 79 REMARK 465 VAL B 80 REMARK 465 ASP B 81 REMARK 465 ASN B 82 REMARK 465 GLU B 83 REMARK 465 SER B 84 REMARK 465 GLY B 85 REMARK 465 LYS B 86 REMARK 465 SER B 87 REMARK 465 VAL B 88 REMARK 465 ASP B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 ILE B 92 REMARK 465 ARG B 93 REMARK 465 ASP B 136 REMARK 465 GLY B 137 REMARK 465 ARG B 252 REMARK 465 HIS B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 148 141.81 -39.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1253 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 135 ND1 REMARK 620 2 ASP A 236 OD1 97.7 REMARK 620 3 HOH A2244 O 107.9 115.4 REMARK 620 4 HOH A2245 O 107.3 86.5 134.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 NE2 REMARK 620 2 ASP A 145 OD1 99.6 REMARK 620 3 HIS A 227 NE2 101.3 87.6 REMARK 620 4 PD2 A1254 N1 89.1 169.7 96.1 REMARK 620 5 PD2 A1254 O22 121.0 93.2 136.8 77.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 143 NE2 REMARK 620 2 ASP B 145 OD1 102.1 REMARK 620 3 HIS B 227 NE2 102.1 95.3 REMARK 620 4 HOH B2187 O 125.2 116.6 110.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PD2 A1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1256 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V4A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SEMET-LABELED PROLYL-4 HYDROXYLASE (P4H) REMARK 900 TYPE I FROM GREEN ALGA CHLAMYDOMONAS REINHARDTII. REMARK 900 RELATED ID: 2JIJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORM OF CHLAMYDOMONAS REINHARDTII REMARK 900 PROLYL-4 HYDROXYLASE TYPE I REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINALLY TRUNCATED CONSTRUCT STARTING FROM G30 DBREF 2JIG A 30 253 PDB 2JIG 2JIG 30 253 DBREF 2JIG B 30 253 PDB 2JIG 2JIG 30 253 SEQRES 1 A 224 GLY PHE GLY GLU LEU LYS GLU GLU TRP ARG GLY GLU VAL SEQRES 2 A 224 VAL HIS LEU SER TRP SER PRO ARG ALA PHE LEU LEU LYS SEQRES 3 A 224 ASN PHE LEU SER ASP GLU GLU CYS ASP TYR ILE VAL GLU SEQRES 4 A 224 LYS ALA ARG PRO LYS MET VAL LYS SER SER VAL VAL ASP SEQRES 5 A 224 ASN GLU SER GLY LYS SER VAL ASP SER GLU ILE ARG THR SEQRES 6 A 224 SER THR GLY THR TRP PHE ALA LYS GLY GLU ASP SER VAL SEQRES 7 A 224 ILE SER LYS ILE GLU LYS ARG VAL ALA GLN VAL THR MET SEQRES 8 A 224 ILE PRO LEU GLU ASN HIS GLU GLY LEU GLN VAL LEU HIS SEQRES 9 A 224 TYR HIS ASP GLY GLN LYS TYR GLU PRO HIS TYR ASP TYR SEQRES 10 A 224 PHE HIS ASP PRO VAL ASN ALA GLY PRO GLU HIS GLY GLY SEQRES 11 A 224 GLN ARG VAL VAL THR MET LEU MET TYR LEU THR THR VAL SEQRES 12 A 224 GLU GLU GLY GLY GLU THR VAL LEU PRO ASN ALA GLU GLN SEQRES 13 A 224 LYS VAL THR GLY ASP GLY TRP SER GLU CYS ALA LYS ARG SEQRES 14 A 224 GLY LEU ALA VAL LYS PRO ILE LYS GLY ASP ALA LEU MET SEQRES 15 A 224 PHE TYR SER LEU LYS PRO ASP GLY SER ASN ASP PRO ALA SEQRES 16 A 224 SER LEU HIS GLY SER CYS PRO THR LEU LYS GLY ASP LYS SEQRES 17 A 224 TRP SER ALA THR LYS TRP ILE HIS VAL ALA PRO ILE GLY SEQRES 18 A 224 GLY ARG HIS SEQRES 1 B 224 GLY PHE GLY GLU LEU LYS GLU GLU TRP ARG GLY GLU VAL SEQRES 2 B 224 VAL HIS LEU SER TRP SER PRO ARG ALA PHE LEU LEU LYS SEQRES 3 B 224 ASN PHE LEU SER ASP GLU GLU CYS ASP TYR ILE VAL GLU SEQRES 4 B 224 LYS ALA ARG PRO LYS MET VAL LYS SER SER VAL VAL ASP SEQRES 5 B 224 ASN GLU SER GLY LYS SER VAL ASP SER GLU ILE ARG THR SEQRES 6 B 224 SER THR GLY THR TRP PHE ALA LYS GLY GLU ASP SER VAL SEQRES 7 B 224 ILE SER LYS ILE GLU LYS ARG VAL ALA GLN VAL THR MET SEQRES 8 B 224 ILE PRO LEU GLU ASN HIS GLU GLY LEU GLN VAL LEU HIS SEQRES 9 B 224 TYR HIS ASP GLY GLN LYS TYR GLU PRO HIS TYR ASP TYR SEQRES 10 B 224 PHE HIS ASP PRO VAL ASN ALA GLY PRO GLU HIS GLY GLY SEQRES 11 B 224 GLN ARG VAL VAL THR MET LEU MET TYR LEU THR THR VAL SEQRES 12 B 224 GLU GLU GLY GLY GLU THR VAL LEU PRO ASN ALA GLU GLN SEQRES 13 B 224 LYS VAL THR GLY ASP GLY TRP SER GLU CYS ALA LYS ARG SEQRES 14 B 224 GLY LEU ALA VAL LYS PRO ILE LYS GLY ASP ALA LEU MET SEQRES 15 B 224 PHE TYR SER LEU LYS PRO ASP GLY SER ASN ASP PRO ALA SEQRES 16 B 224 SER LEU HIS GLY SER CYS PRO THR LEU LYS GLY ASP LYS SEQRES 17 B 224 TRP SER ALA THR LYS TRP ILE HIS VAL ALA PRO ILE GLY SEQRES 18 B 224 GLY ARG HIS HET ZN A1252 1 HET ZN A1253 1 HET PD2 A1254 12 HET GOL A1255 6 HET SO4 A1256 5 HET ZN B1252 1 HET ZN B1253 1 HETNAM ZN ZINC ION HETNAM PD2 PYRIDINE-2,4-DICARBOXYLIC ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 PD2 C7 H5 N O4 FORMUL 6 GOL C3 H8 O3 FORMUL 7 SO4 O4 S 2- FORMUL 10 HOH *435(H2 O) HELIX 1 1 SER A 59 ARG A 71 1 13 HELIX 2 2 PRO A 72 MET A 74 5 3 HELIX 3 3 ASP A 105 MET A 120 1 16 HELIX 4 4 PRO A 122 ASN A 125 5 4 HELIX 5 5 CYS A 195 GLY A 199 5 5 HELIX 6 6 ASP A 222 LEU A 226 5 5 HELIX 7 7 SER B 59 ARG B 71 1 13 HELIX 8 8 PRO B 72 MET B 74 5 3 HELIX 9 9 ASP B 105 MET B 120 1 16 HELIX 10 10 PRO B 122 GLU B 124 5 3 HELIX 11 11 ASP B 149 GLY B 154 5 6 HELIX 12 12 GLY B 154 GLY B 158 5 5 HELIX 13 13 CYS B 195 GLY B 199 5 5 HELIX 14 14 ASP B 222 LEU B 226 5 5 SHEET 1 AA 8 VAL A 42 SER A 46 0 SHEET 2 AA 8 ALA A 51 LEU A 54 -1 O ALA A 51 N LEU A 45 SHEET 3 AA 8 ALA A 209 TYR A 213 -1 O ALA A 209 N LEU A 54 SHEET 4 AA 8 ARG A 161 TYR A 168 -1 O THR A 164 N PHE A 212 SHEET 5 AA 8 ASP A 236 HIS A 245 -1 O ALA A 240 N MET A 167 SHEET 6 AA 8 GLN A 130 HIS A 135 -1 O GLN A 130 N THR A 241 SHEET 7 AA 8 THR A 96 TRP A 99 -1 O THR A 96 N HIS A 133 SHEET 8 AA 8 VAL A 75 LYS A 76 -1 O VAL A 75 N GLY A 97 SHEET 1 AB 2 SER A 78 ASP A 81 0 SHEET 2 AB 2 LYS A 86 ASP A 89 -1 O LYS A 86 N ASP A 81 SHEET 1 AC 4 TYR A 140 HIS A 143 0 SHEET 2 AC 4 HIS A 227 SER A 229 -1 O HIS A 227 N HIS A 143 SHEET 3 AC 4 THR A 178 LEU A 180 -1 O VAL A 179 N GLY A 228 SHEET 4 AC 4 LEU A 200 VAL A 202 -1 O LEU A 200 N LEU A 180 SHEET 1 AD 2 GLU A 174 GLY A 175 0 SHEET 2 AD 2 THR A 232 LYS A 234 -1 N LEU A 233 O GLU A 174 SHEET 1 BA 7 VAL B 42 SER B 46 0 SHEET 2 BA 7 ALA B 51 LEU B 54 -1 O ALA B 51 N LEU B 45 SHEET 3 BA 7 ALA B 209 TYR B 213 -1 O ALA B 209 N LEU B 54 SHEET 4 BA 7 ARG B 161 TYR B 168 -1 O THR B 164 N PHE B 212 SHEET 5 BA 7 TRP B 238 HIS B 245 -1 O ALA B 240 N MET B 167 SHEET 6 BA 7 HIS B 126 TYR B 134 -1 N GLU B 127 O TRP B 243 SHEET 7 BA 7 SER B 95 PHE B 100 -1 O THR B 96 N HIS B 133 SHEET 1 BB 2 GLU B 174 GLY B 175 0 SHEET 2 BB 2 THR B 232 LYS B 234 -1 N LEU B 233 O GLU B 174 SHEET 1 BC 3 LEU B 200 VAL B 202 0 SHEET 2 BC 3 THR B 178 LEU B 180 -1 O THR B 178 N VAL B 202 SHEET 3 BC 3 GLY B 228 SER B 229 -1 O GLY B 228 N VAL B 179 SSBOND 1 CYS A 195 CYS A 230 1555 1555 2.04 SSBOND 2 CYS B 195 CYS B 230 1555 1555 2.04 LINK ND1 HIS A 135 ZN ZN A1253 1555 1555 1.98 LINK NE2 HIS A 143 ZN ZN A1252 1555 1555 2.12 LINK OD1 ASP A 145 ZN ZN A1252 1555 1555 2.12 LINK NE2 HIS A 227 ZN ZN A1252 1555 1555 2.15 LINK OD1 ASP A 236 ZN ZN A1253 1555 1555 2.02 LINK ZN ZN A1252 N1 PD2 A1254 1555 1555 2.23 LINK ZN ZN A1252 O22 PD2 A1254 1555 1555 2.07 LINK ZN ZN A1253 O HOH A2244 1555 1555 2.15 LINK ZN ZN A1253 O HOH A2245 1555 1555 2.48 LINK ND1 HIS B 133 ZN ZN B1253 1555 1555 2.26 LINK NE2 HIS B 143 ZN ZN B1252 1555 1555 1.94 LINK OD1 ASP B 145 ZN ZN B1252 1555 1555 2.04 LINK NE2 HIS B 227 ZN ZN B1252 1555 1555 2.02 LINK ZN ZN B1252 O HOH B2187 1555 1555 2.15 CISPEP 1 SER A 48 PRO A 49 0 -0.38 CISPEP 2 GLY A 250 GLY A 251 0 2.85 CISPEP 3 SER B 48 PRO B 49 0 3.15 SITE 1 AC1 4 HIS A 143 ASP A 145 HIS A 227 PD2 A1254 SITE 1 AC2 4 HIS A 135 ASP A 236 HOH A2244 HOH A2245 SITE 1 AC3 14 TYR A 134 HIS A 143 ASP A 145 LEU A 166 SITE 2 AC3 14 THR A 178 HIS A 227 GLY A 228 SER A 229 SITE 3 AC3 14 LYS A 237 SER A 239 THR A 241 TRP A 243 SITE 4 AC3 14 ZN A1252 HOH A2084 SITE 1 AC4 4 HIS B 143 ASP B 145 HIS B 227 HOH B2187 SITE 1 AC5 2 HIS B 133 HIS B 135 SITE 1 AC6 7 VAL A 75 SER A 77 SER A 78 ARG A 93 SITE 2 AC6 7 GLY A 97 VAL A 151 ASN A 152 SITE 1 AC7 9 LYS A 86 HOH A2075 HOH A2192 HOH A2247 SITE 2 AC7 9 HOH A2248 PHE B 147 HIS B 148 ASP B 149 SITE 3 AC7 9 ASN B 152 CRYST1 57.920 60.250 116.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008558 0.00000