HEADER TRANSFERASE 01-JUL-07 2JIU TITLE CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION IN COMPLEX WITH TITLE 2 AEE788 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 695-1022; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: EGFR 696-1022 T790M SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACG2T; SOURCE 10 OTHER_DETAILS: EGFR 696-1022 T790M KEYWDS CELL CYCLE, ATP-BINDING, TRANSFERASE, NUCLEOTIDE-BINDING, ALTERNATIVE KEYWDS 2 SPLICING, EGFR, T790M, KINASE, AEE788, RECEPTOR, TYROSINE-PROTEIN KEYWDS 3 KINASE, EPIDERMAL GROWTH FACTOR, PHOSPHORYLATION, DISEASE MUTATION, KEYWDS 4 ANTI-ONCOGENE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR C.-H.YUN,K.E.MENGWASSER,A.V.TOMS,M.S.WOO,H.GREULICH,K.-K.WONG, AUTHOR 2 M.MEYERSON,M.J.ECK REVDAT 3 13-DEC-23 2JIU 1 REMARK REVDAT 2 24-FEB-09 2JIU 1 VERSN REVDAT 1 22-JAN-08 2JIU 0 JRNL AUTH C.-H.YUN,K.E.MENGWASSER,A.V.TOMS,M.S.WOO,H.GREULICH, JRNL AUTH 2 K.-K.WONG,M.MEYERSON,M.J.ECK JRNL TITL THE T790M MUTATION IN EGFR KINASE CAUSES DRUG RESISTANCE BY JRNL TITL 2 INCREASING THE AFFINITY FOR ATP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 2070 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18227510 JRNL DOI 10.1073/PNAS.0709662105 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.518 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4935 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6688 ; 1.367 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 5.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;37.566 ;23.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 873 ;19.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.542 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3647 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2407 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3400 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3053 ; 0.785 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4919 ; 1.484 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1882 ; 1.654 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 2.909 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14268 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JIT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES 7.5, 0.3M NACL, 21% PEG6K, REMARK 280 5MM TCEP, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.20250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.43350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.32150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.43350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.20250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.32150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 790 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 790 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 695 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 ASP A 1009 REMARK 465 LEU A 1017 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLU B 1005 REMARK 465 ASP B 1006 REMARK 465 MET B 1007 REMARK 465 ASP B 1008 REMARK 465 ASP B 1009 REMARK 465 VAL B 1010 REMARK 465 VAL B 1011 REMARK 465 ASP B 1012 REMARK 465 ALA B 1013 REMARK 465 ASP B 1014 REMARK 465 GLU B 1015 REMARK 465 TYR B 1016 REMARK 465 LEU B 1017 REMARK 465 ILE B 1018 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 697 CG CD OE1 OE2 REMARK 470 PRO A 699 CG CD REMARK 470 ARG A 748 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 LYS A 860 CG CD CE NZ REMARK 470 GLU A 872 CG CD OE1 OE2 REMARK 470 GLU A 985 CG CD OE1 OE2 REMARK 470 SER A 991 OG REMARK 470 PRO A 992 CG CD REMARK 470 ASP A1012 CG OD1 OD2 REMARK 470 TYR A1016 CA C O CB CG CD1 CD2 REMARK 470 TYR A1016 CE1 CE2 CZ OH REMARK 470 SER B 695 OG REMARK 470 PHE B 723 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 736 CG CD OE1 OE2 REMARK 470 LYS B 737 CG CD CE NZ REMARK 470 LYS B 739 CG CD CE NZ REMARK 470 LYS B 860 CG CD CE NZ REMARK 470 GLU B 865 CG CD OE1 OE2 REMARK 470 GLU B 866 CG CD OE1 OE2 REMARK 470 GLU B 872 CG CD OE1 OE2 REMARK 470 HIS B 988 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 989 CG CD1 CD2 REMARK 470 SER B 991 OG REMARK 470 PRO B 992 CG CD REMARK 470 THR B 993 OG1 CG2 REMARK 470 SER B 995 OG REMARK 470 ASN B 996 CG OD1 ND2 REMARK 470 TYR B 998 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B1001 CG CD1 CD2 REMARK 470 ASP B1003 CG OD1 OD2 REMARK 470 GLU B1004 CA C O CB CG CD OE1 REMARK 470 GLU B1004 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 836 CB ALA B 859 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 733 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 697 -26.40 -143.96 REMARK 500 PHE A 723 54.22 -67.67 REMARK 500 GLU A 734 101.25 -49.75 REMARK 500 GLU A 736 135.10 -39.83 REMARK 500 LYS A 737 58.49 -90.63 REMARK 500 ALA A 755 36.01 -81.69 REMARK 500 GLU A 804 -74.75 -64.16 REMARK 500 HIS A 805 21.74 -74.32 REMARK 500 LYS A 806 14.39 -52.63 REMARK 500 ASP A 830 9.01 -66.15 REMARK 500 ARG A 836 -11.16 85.29 REMARK 500 ASP A 855 89.73 63.52 REMARK 500 ALA A 864 -68.86 -21.66 REMARK 500 GLU A 872 -123.45 -80.68 REMARK 500 ILE A 878 -39.86 -38.52 REMARK 500 LYS A 879 3.02 -68.15 REMARK 500 LEU A 887 -78.42 -66.15 REMARK 500 ARG A 889 53.06 32.93 REMARK 500 ALA A 920 24.66 -72.48 REMARK 500 SER A 925 -74.21 -68.06 REMARK 500 TRP A 951 42.64 -108.98 REMARK 500 SER A 991 97.63 -63.65 REMARK 500 ALA A1013 -131.84 -64.95 REMARK 500 ASP A1014 -9.20 62.85 REMARK 500 THR B 710 49.62 -86.36 REMARK 500 GLU B 711 -14.66 -146.10 REMARK 500 PHE B 723 44.32 -60.98 REMARK 500 PRO B 733 178.13 -45.56 REMARK 500 GLU B 804 5.41 -69.98 REMARK 500 HIS B 805 20.32 -144.69 REMARK 500 LYS B 806 -20.78 -31.92 REMARK 500 ARG B 836 -35.50 94.58 REMARK 500 HIS B 850 107.19 -162.91 REMARK 500 ASP B 855 55.68 -118.63 REMARK 500 LEU B 858 43.29 -60.97 REMARK 500 ALA B 859 19.62 -59.61 REMARK 500 LYS B 860 -131.01 -75.35 REMARK 500 LEU B 861 109.32 59.90 REMARK 500 ALA B 864 -52.66 173.53 REMARK 500 ALA B 871 -113.91 -87.75 REMARK 500 GLU B 872 -74.89 -179.52 REMARK 500 LEU B 887 -103.33 -68.50 REMARK 500 HIS B 888 -31.02 -36.69 REMARK 500 ARG B 889 47.82 74.93 REMARK 500 TYR B 915 46.30 38.25 REMARK 500 ALA B 920 27.50 -67.62 REMARK 500 GLU B 922 -9.06 -143.67 REMARK 500 SER B 924 57.60 -65.22 REMARK 500 SER B 925 -53.58 175.56 REMARK 500 PRO B 959 159.26 -47.02 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3005 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B3017 DISTANCE = 6.65 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AEE A2017 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DNQ RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE FIRST AND SECOND DOMAINS OF THE HUMAN REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN REMARK 900 RELATED ID: 1DNR RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE THIRD AND FOURTH DOMAINS OF THE HUMAN REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN REMARK 900 RELATED ID: 1IVO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN EPIDERMAL GROWTHFACTOR REMARK 900 AND RECEPTOR EXTRACELLULAR DOMAINS. REMARK 900 RELATED ID: 1M14 RELATED DB: PDB REMARK 900 TYROSINE KINASE DOMAIN FROM EPIDERMAL GROWTH FACTOR RECEPTOR REMARK 900 RELATED ID: 1M17 RELATED DB: PDB REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR TYROSINE KINASE DOMAINWITH 4- REMARK 900 ANILINOQUINAZOLINE INHIBITOR ERLOTINIB REMARK 900 RELATED ID: 1MOX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN EPIDERMAL GROWTH FACTOR REMARK 900 RECEPTOR(RESIDUES 1-501) IN COMPLEX WITH TGF-ALPHA REMARK 900 RELATED ID: 1NQL RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN EPIDERMALGROWTH REMARK 900 FACTOR (EGF) RECEPTOR IN AN INACTIVE (LOW PH)COMPLEX WITH EGF. REMARK 900 RELATED ID: 1XKK RELATED DB: PDB REMARK 900 EGFR KINASE DOMAIN COMPLEXED WITH A QUINAZOLINE INHIBITOR-GW572016 REMARK 900 RELATED ID: 1YY9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMALGROWTH FACTOR REMARK 900 RECEPTOR IN COMPLEX WITH THE FAB FRAGMENT OFCETUXIMAB/ERBITUX/ IMC- REMARK 900 C225 REMARK 900 RELATED ID: 1Z9I RELATED DB: PDB REMARK 900 A STRUCTURAL MODEL FOR THE MEMBRANE-BOUND FORM OF THEJUXTAMEMBRANE REMARK 900 DOMAIN OF THE EPIDERMAL GROWTH FACTORRECEPTOR REMARK 900 RELATED ID: 2GS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN REMARK 900 RELATED ID: 2GS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INACTIVE EGFR KINASE DOMAIN INCOMPLEX WITH REMARK 900 AMP-PNP REMARK 900 RELATED ID: 2ITN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AMP-PNP REMARK 900 RELATED ID: 2ITO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH IRESSA REMARK 900 RELATED ID: 2ITP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AEE788 REMARK 900 RELATED ID: 2ITQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AFN941 REMARK 900 RELATED ID: 2ITT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AEE788 REMARK 900 RELATED ID: 2ITU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AFN941 REMARK 900 RELATED ID: 2ITV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AMP-PNP REMARK 900 RELATED ID: 2ITW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AFN941 REMARK 900 RELATED ID: 2ITX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AMP-PNP REMARK 900 RELATED ID: 2ITY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH IRESSA REMARK 900 RELATED ID: 2ITZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH IRESSA REMARK 900 RELATED ID: 2J5E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN REMARK 900 IRREVERSIBLE INHIBITOR 13- JAB REMARK 900 RELATED ID: 2J5F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN REMARK 900 IRREVERSIBLE INHIBITOR 34- JAB REMARK 900 RELATED ID: 2J6M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AEE788 REMARK 900 RELATED ID: 2JIT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION REMARK 900 RELATED ID: 2JIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION IN COMPEX REMARK 900 WITH HKI-272 REMARK 999 REMARK 999 SEQUENCE REMARK 999 T790M MUTANT DBREF 2JIU A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 DBREF 2JIU B 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 2JIU MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 2JIU MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQRES 1 A 328 SER GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU SEQRES 2 A 328 LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER SEQRES 3 A 328 GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO SEQRES 4 A 328 GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU SEQRES 5 A 328 LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE SEQRES 6 A 328 LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO SEQRES 7 A 328 HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR SEQRES 8 A 328 VAL GLN LEU ILE MET GLN LEU MET PRO PHE GLY CYS LEU SEQRES 9 A 328 LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER SEQRES 10 A 328 GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY SEQRES 11 A 328 MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP SEQRES 12 A 328 LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS SEQRES 13 A 328 VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY SEQRES 14 A 328 ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL SEQRES 15 A 328 PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG SEQRES 16 A 328 ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL SEQRES 17 A 328 THR VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR SEQRES 18 A 328 ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU SEQRES 19 A 328 LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE SEQRES 20 A 328 ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP SEQRES 21 A 328 ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU SEQRES 22 A 328 PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL SEQRES 23 A 328 ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR SEQRES 24 A 328 ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP SEQRES 25 A 328 MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO SEQRES 26 A 328 GLN GLN GLY SEQRES 1 B 328 SER GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU SEQRES 2 B 328 LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER SEQRES 3 B 328 GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO SEQRES 4 B 328 GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU SEQRES 5 B 328 LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE SEQRES 6 B 328 LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO SEQRES 7 B 328 HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR SEQRES 8 B 328 VAL GLN LEU ILE MET GLN LEU MET PRO PHE GLY CYS LEU SEQRES 9 B 328 LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER SEQRES 10 B 328 GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY SEQRES 11 B 328 MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP SEQRES 12 B 328 LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS SEQRES 13 B 328 VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY SEQRES 14 B 328 ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL SEQRES 15 B 328 PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG SEQRES 16 B 328 ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL SEQRES 17 B 328 THR VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR SEQRES 18 B 328 ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU SEQRES 19 B 328 LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE SEQRES 20 B 328 ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP SEQRES 21 B 328 ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU SEQRES 22 B 328 PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL SEQRES 23 B 328 ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR SEQRES 24 B 328 ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP SEQRES 25 B 328 MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO SEQRES 26 B 328 GLN GLN GLY HET AEE A2017 33 HETNAM AEE 6-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]PHENYL}-N-[(1R)-1- HETNAM 2 AEE PHENYLETHYL]-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE FORMUL 3 AEE C27 H32 N6 FORMUL 4 HOH *60(H2 O) HELIX 1 1 PRO A 753 VAL A 769 1 17 HELIX 2 2 CYS A 797 HIS A 805 1 9 HELIX 3 3 GLY A 810 ASP A 830 1 21 HELIX 4 4 ALA A 839 ARG A 841 5 3 HELIX 5 5 PRO A 877 MET A 881 5 5 HELIX 6 6 ALA A 882 ARG A 889 1 8 HELIX 7 7 THR A 892 THR A 909 1 18 HELIX 8 8 GLU A 922 GLY A 930 1 9 HELIX 9 9 THR A 940 CYS A 950 1 11 HELIX 10 10 ASP A 954 ARG A 958 5 5 HELIX 11 11 LYS A 960 ARG A 973 1 14 HELIX 12 12 ASP A 974 TYR A 978 5 5 HELIX 13 13 LYS B 708 THR B 710 5 3 HELIX 14 14 SER B 752 VAL B 769 1 18 HELIX 15 15 CYS B 797 GLU B 804 1 8 HELIX 16 16 GLY B 810 ARG B 831 1 22 HELIX 17 17 ALA B 839 ARG B 841 5 3 HELIX 18 18 PRO B 877 MET B 881 5 5 HELIX 19 19 ALA B 882 LEU B 887 1 6 HELIX 20 20 THR B 892 THR B 909 1 18 HELIX 21 21 GLU B 922 LEU B 927 1 6 HELIX 22 22 THR B 940 CYS B 950 1 11 HELIX 23 23 ASP B 954 ARG B 958 5 5 HELIX 24 24 LYS B 960 ARG B 973 1 14 HELIX 25 25 ASP B 974 LEU B 979 1 6 HELIX 26 26 SER B 995 MET B 1002 1 8 SHEET 1 AA 5 PHE A 712 GLY A 719 0 SHEET 2 AA 5 THR A 725 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 AA 5 ILE A 740 GLU A 746 -1 O ILE A 740 N TRP A 731 SHEET 4 AA 5 VAL A 786 GLN A 791 -1 O LEU A 788 N LYS A 745 SHEET 5 AA 5 LEU A 777 LEU A 782 -1 N LEU A 778 O ILE A 789 SHEET 1 AB 2 VAL A 843 THR A 847 0 SHEET 2 AB 2 HIS A 850 ILE A 853 -1 O HIS A 850 N THR A 847 SHEET 1 BA 5 PHE B 712 SER B 720 0 SHEET 2 BA 5 THR B 725 TRP B 731 -1 O VAL B 726 N LEU B 718 SHEET 3 BA 5 ILE B 740 GLU B 746 -1 O ILE B 740 N TRP B 731 SHEET 4 BA 5 GLN B 787 GLN B 791 -1 O LEU B 788 N LYS B 745 SHEET 5 BA 5 LEU B 777 CYS B 781 -1 N LEU B 778 O ILE B 789 SHEET 1 BB 2 VAL B 843 THR B 847 0 SHEET 2 BB 2 HIS B 850 ILE B 853 -1 O HIS B 850 N LYS B 846 SITE 1 AC1 16 LEU A 718 ALA A 743 LYS A 745 LEU A 788 SITE 2 AC1 16 GLN A 791 LEU A 792 MET A 793 PRO A 794 SITE 3 AC1 16 GLY A 796 ASP A 800 GLU A 804 LEU A 844 SITE 4 AC1 16 THR A 854 ASP A 855 HOH A3016 HOH A3038 CRYST1 48.405 88.643 164.867 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006065 0.00000