HEADER OXIDOREDUCTASE 15-APR-08 2JJP TITLE STRUCTURE OF CYTOCHROME P450 ERYK IN COMPLEX WITH INHIBITOR TITLE 2 KETOCONAZOLE (KC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 113A1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ERYTHROMYCIN B/D C-12 HYDROXYLASE, CYTOCROME P450 CYP113A1; COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPOLYSPORA ERYTHRAEA; SOURCE 3 ORGANISM_TAXID: 1836; SOURCE 4 STRAIN: NRRL 23338; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28B; SOURCE 9 OTHER_DETAILS: CDNA KEYWDS IRON, HEME, MONOOXYGENASE, METAL-BINDING, ANTIBIOTIC BIOSYNTHESIS, KEYWDS 2 TIE-ROD MECHANISM OF ACTION, OXIDOREDUCTASE, SUBSTRATE SPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR C.SAVINO,G.SCIARA,A.E.MIELE,S.G.KENDREW,B.VALLONE REVDAT 3 13-DEC-23 2JJP 1 REMARK LINK REVDAT 2 22-AUG-12 2JJP 1 KEYWDS JRNL REMARK VERSN REVDAT 2 2 1 HETSYN FORMUL REVDAT 1 14-JUL-09 2JJP 0 JRNL AUTH L.C.MONTEMIGLIO,S.GIANNI,B.VALLONE,C.SAVINO JRNL TITL AZOLE DRUGS TRAP CYTOCHROME P450 ERYK IN ALTERNATIVE JRNL TITL 2 CONFORMATIONAL STATES. JRNL REF BIOCHEMISTRY V. 49 9199 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20845962 JRNL DOI 10.1021/BI101062V REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 20602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.02000 REMARK 3 B22 (A**2) : 4.54000 REMARK 3 B33 (A**2) : -2.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3320 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4545 ; 1.611 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 6.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;34.527 ;23.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;18.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;22.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2590 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1684 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2229 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 87 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2046 ; 1.096 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3250 ; 1.775 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1425 ; 2.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1293 ; 3.475 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. COORDINATE START FROM A.A. 15 BECAUSE THERE WAS NOT REMARK 3 ELECTRON DENSITY FOR PREVIOUS RESIDUES REMARK 4 REMARK 4 2JJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290035935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25326 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2JJN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULHATE, 0.1M BIS-TRIS REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.01900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 1 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PHE 330 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 CYS A 9 REMARK 465 CYS A 10 REMARK 465 ALA A 11 REMARK 465 ARG A 12 REMARK 465 ARG A 13 REMARK 465 THR A 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2010 O HOH A 2017 1.87 REMARK 500 O HOH A 2138 O HOH A 2139 2.09 REMARK 500 OE1 GLU A 390 O HOH A 2218 2.09 REMARK 500 O HOH A 2018 O HOH A 2195 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 -86.37 -112.17 REMARK 500 VAL A 21 95.06 75.14 REMARK 500 THR A 74 6.97 -63.84 REMARK 500 ALA A 80 69.02 -64.50 REMARK 500 SER A 81 74.85 -106.22 REMARK 500 LEU A 139 -54.34 -126.73 REMARK 500 GLU A 160 98.61 -178.42 REMARK 500 GLN A 161 29.32 -144.00 REMARK 500 GLN A 173 96.16 -62.98 REMARK 500 ASP A 175 -46.12 -143.21 REMARK 500 ARG A 336 96.57 -69.29 REMARK 500 ALA A 341 94.20 -55.77 REMARK 500 ARG A 381 50.25 -103.16 REMARK 500 ASP A 383 -44.36 -143.16 REMARK 500 GLN A 391 -71.15 -136.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2039 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 412 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 HEM A 412 NA 91.0 REMARK 620 3 HEM A 412 NB 84.1 92.3 REMARK 620 4 HEM A 412 NC 88.4 175.5 83.3 REMARK 620 5 HEM A 412 ND 96.8 89.2 178.2 95.2 REMARK 620 6 KLN A 413 N2 170.3 91.4 86.4 88.4 92.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KLN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIO RELATED DB: PDB REMARK 900 STRUCTURE OF THE OPEN HISTIDINE TAGGED C. SAVINO, CYTOCHROME P450 REMARK 900 ERYK REMARK 900 RELATED ID: 2VRU RELATED DB: PDB REMARK 900 STRUCTURE OF OPEN HISTIDINE TAGGED CYTOCHROME P450 ERYK REMARK 900 RELATED ID: 2JJN RELATED DB: PDB REMARK 900 STRUCTURE OF CLOSED CYTOCHROME P450 ERYK REMARK 900 RELATED ID: 2VRV RELATED DB: PDB REMARK 900 STRUCTURE OF HISTIDINE TAGGED CYTOCHROME P450 ERYK IN COMPLEX WITH REMARK 900 INHIBITOR CLOTRIMAZOLE (CLT) REMARK 900 RELATED ID: 2JJO RELATED DB: PDB REMARK 900 STRUCTURE OF CYTOCHROME P450 ERYK IN COMPLEX WITH ITS NATURAL REMARK 900 SUBSTRATE ERD DBREF 2JJP A 1 14 PDB 2JJP 2JJP 1 14 DBREF 2JJP A 15 411 UNP P48635 CPXQ_SACEN 1 397 SEQADV 2JJP LEU A 15 UNP P48635 MET 1 ENGINEERED MUTATION SEQADV 2JJP LEU A 344 UNP P48635 PHE 330 ENGINEERED MUTATION SEQRES 1 A 411 MET PHE ALA ASP VAL GLU THR THR CYS CYS ALA ARG ARG SEQRES 2 A 411 THR LEU THR THR ILE ASP GLU VAL PRO GLY MET ALA ASP SEQRES 3 A 411 GLU THR ALA LEU LEU ASP TRP LEU GLY THR MET ARG GLU SEQRES 4 A 411 LYS GLN PRO VAL TRP GLN ASP ARG TYR GLY VAL TRP HIS SEQRES 5 A 411 VAL PHE ARG HIS ALA ASP VAL GLN THR VAL LEU ARG ASP SEQRES 6 A 411 THR ALA THR PHE SER SER ASP PRO THR ARG VAL ILE GLU SEQRES 7 A 411 GLY ALA SER PRO THR PRO GLY MET ILE HIS GLU ILE ASP SEQRES 8 A 411 PRO PRO GLU HIS ARG ALA LEU ARG LYS VAL VAL SER SER SEQRES 9 A 411 ALA PHE THR PRO ARG THR ILE SER ASP LEU GLU PRO ARG SEQRES 10 A 411 ILE ARG ASP VAL THR ARG SER LEU LEU ALA ASP ALA GLY SEQRES 11 A 411 GLU SER PHE ASP LEU VAL ASP VAL LEU ALA PHE PRO LEU SEQRES 12 A 411 PRO VAL THR ILE VAL ALA GLU LEU LEU GLY LEU PRO PRO SEQRES 13 A 411 MET ASP HIS GLU GLN PHE GLY ASP TRP SER GLY ALA LEU SEQRES 14 A 411 VAL ASP ILE GLN MET ASP ASP PRO THR ASP PRO ALA LEU SEQRES 15 A 411 ALA GLU ARG ILE ALA ASP VAL LEU ASN PRO LEU THR ALA SEQRES 16 A 411 TYR LEU LYS ALA ARG CYS ALA GLU ARG ARG ALA ASP PRO SEQRES 17 A 411 GLY ASP ASP LEU ILE SER ARG LEU VAL LEU ALA GLU VAL SEQRES 18 A 411 ASP GLY ARG ALA LEU ASP ASP GLU GLU ALA ALA ASN PHE SEQRES 19 A 411 SER THR ALA LEU LEU LEU ALA GLY HIS ILE THR THR THR SEQRES 20 A 411 VAL LEU LEU GLY ASN ILE VAL ARG THR LEU ASP GLU HIS SEQRES 21 A 411 PRO ALA HIS TRP ASP ALA ALA ALA GLU ASP PRO GLY ARG SEQRES 22 A 411 ILE PRO ALA ILE VAL GLU GLU VAL LEU ARG TYR ARG PRO SEQRES 23 A 411 PRO PHE PRO GLN MET GLN ARG THR THR THR LYS ALA THR SEQRES 24 A 411 GLU VAL ALA GLY VAL PRO ILE PRO ALA ASP VAL MET VAL SEQRES 25 A 411 ASN THR TRP VAL LEU SER ALA ASN ARG ASP SER ASP ALA SEQRES 26 A 411 HIS ASP ASP PRO ASP ARG PHE ASP PRO SER ARG LYS SER SEQRES 27 A 411 GLY GLY ALA ALA GLN LEU SER PHE GLY HIS GLY VAL HIS SEQRES 28 A 411 PHE CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU ASN ARG SEQRES 29 A 411 VAL ALA LEU GLU GLU ILE ILE ALA ARG PHE GLY ARG LEU SEQRES 30 A 411 THR VAL ASP ARG ASP ASP GLU ARG LEU ARG HIS PHE GLU SEQRES 31 A 411 GLN ILE VAL LEU GLY THR ARG HIS LEU PRO VAL LEU ALA SEQRES 32 A 411 GLY SER SER PRO ARG GLN SER ALA HET HEM A 412 43 HET KLN A 413 36 HET SO4 A 414 5 HET SO4 A 415 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM KLN 1-ACETYL-4-(4-{[(2S,4R)-2-(2,4-DICHLOROPHENYL)-2-(1H- HETNAM 2 KLN IMIDAZOL-1-YLMETHYL)-1,3-DIOXOLAN-4- HETNAM 3 KLN YL]METHOXY}PHENYL)PIPERAZINE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 KLN C26 H28 CL2 N4 O4 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *229(H2 O) HELIX 1 1 ASP A 26 GLN A 41 1 16 HELIX 2 2 ARG A 55 ASP A 65 1 11 HELIX 3 3 ASP A 72 VAL A 76 5 5 HELIX 4 4 MET A 86 ILE A 90 5 5 HELIX 5 5 PRO A 93 PHE A 106 1 14 HELIX 6 6 THR A 107 ASP A 113 1 7 HELIX 7 7 LEU A 114 ASP A 128 1 15 HELIX 8 8 LEU A 135 LEU A 139 1 5 HELIX 9 9 PHE A 141 GLY A 153 1 13 HELIX 10 10 GLY A 163 ASP A 171 1 9 HELIX 11 11 PRO A 180 ASP A 207 1 28 HELIX 12 12 ASP A 211 ALA A 219 1 9 HELIX 13 13 ASP A 227 HIS A 260 1 34 HELIX 14 14 PRO A 261 ASP A 270 1 10 HELIX 15 15 ARG A 273 ARG A 285 1 13 HELIX 16 16 VAL A 316 ARG A 321 1 6 HELIX 17 17 GLN A 343 GLY A 347 5 5 HELIX 18 18 GLY A 355 GLY A 375 1 21 SHEET 1 AA 5 VAL A 43 GLN A 45 0 SHEET 2 AA 5 TRP A 51 VAL A 53 -1 O HIS A 52 N TRP A 44 SHEET 3 AA 5 MET A 311 TRP A 315 1 O MET A 311 N TRP A 51 SHEET 4 AA 5 GLN A 290 THR A 295 -1 O MET A 291 N THR A 314 SHEET 5 AA 5 PHE A 69 SER A 70 -1 O SER A 70 N THR A 294 SHEET 1 AB 3 SER A 132 ASP A 134 0 SHEET 2 AB 3 PRO A 400 LEU A 402 -1 O VAL A 401 N PHE A 133 SHEET 3 AB 3 THR A 378 VAL A 379 -1 O THR A 378 N LEU A 402 SHEET 1 AC 2 THR A 299 VAL A 301 0 SHEET 2 AC 2 VAL A 304 ILE A 306 -1 O VAL A 304 N VAL A 301 LINK SG CYS A 353 FE HEM A 412 1555 1555 2.24 LINK FE HEM A 412 N2 KLN A 413 1555 1555 1.96 CISPEP 1 PRO A 92 PRO A 93 0 6.09 SITE 1 AC1 20 ILE A 87 HIS A 88 HIS A 95 ARG A 99 SITE 2 AC1 20 ALA A 241 THR A 245 MET A 291 ARG A 293 SITE 3 AC1 20 SER A 345 PHE A 346 GLY A 347 VAL A 350 SITE 4 AC1 20 HIS A 351 CYS A 353 GLY A 355 ALA A 359 SITE 5 AC1 20 KLN A 413 HOH A2064 HOH A2065 HOH A2228 SITE 1 AC2 14 HIS A 88 MET A 174 ALA A 237 LEU A 240 SITE 2 AC2 14 ALA A 241 PHE A 288 GLN A 290 MET A 291 SITE 3 AC2 14 GLN A 292 ILE A 392 HEM A 412 HOH A2114 SITE 4 AC2 14 HOH A2174 HOH A2219 SITE 1 AC3 4 ARG A 381 ARG A 385 LEU A 386 HIS A 388 SITE 1 AC4 5 HIS A 326 ASP A 327 ARG A 336 LYS A 337 SITE 2 AC4 5 SER A 338 CRYST1 53.243 68.038 57.687 90.00 100.71 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018782 0.000000 0.003552 0.00000 SCALE2 0.000000 0.014698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017642 0.00000