HEADER TRANSFERASE 23-APR-08 2JJX TITLE THE CRYSTAL STRUCTURE OF UMP KINASE FROM BACILLUS ANTHRACIS (BA1797) COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: UMP KINASE; COMPND 5 EC: 2.7.4.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 STRAIN: AMES; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDEST14; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: GATEWAY KEYWDS STRUCTURAL GENOMICS, PYRIMIDINE BIOSYNTHESIS, ATP-BINDING, URIDYLATE KEYWDS 2 KINASE, NUCLEOTIDE-BINDING, OPPF, PYRH, KINASE, CYTOPLASM, KEYWDS 3 TRANSFERASE, OXFORD PROTEIN PRODUCTION FACILITY (OPPF), STRUCTURAL KEYWDS 4 PROTEOMICS IN EUROPE (SPINE) EXPDTA X-RAY DIFFRACTION AUTHOR C.MEIER,L.G.CARTER,E.J.MANCINI,R.J.OWENS,D.I.STUART,R.M.ESNOUF,OXFORD AUTHOR 2 PROTEIN PRODUCTION FACILITY (OPPF),STRUCTURAL PROTEOMICS IN EUROPE AUTHOR 3 (SPINE) REVDAT 5 13-DEC-23 2JJX 1 LINK REVDAT 4 24-MAY-17 2JJX 1 AUTHOR REVDAT 3 24-FEB-09 2JJX 1 VERSN REVDAT 2 19-AUG-08 2JJX 1 JRNL REMARK REVDAT 1 29-JUL-08 2JJX 0 JRNL AUTH C.MEIER,L.G.CARTER,S.SAINSBURY,E.J.MANCINI,R.J.OWENS, JRNL AUTH 2 D.I.STUART,R.M.ESNOUF JRNL TITL THE CRYSTAL STRUCTURE OF UMP KINASE FROM BACILLUS ANTHRACIS JRNL TITL 2 (BA1797) REVEALS AN ALLOSTERIC NUCLEOTIDE-BINDING SITE. JRNL REF J.MOL.BIOL. V. 381 1098 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18625239 JRNL DOI 10.1016/J.JMB.2008.06.078 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REGIONS 20-23 AND 171-176 IN EACH CHAIN REMARK 3 ARE POORLY ORDERED AND CLASH BETWEEN SYMMETRY RELATED COPIES REMARK 3 RESIDUE PHE106 IN A AND B CHAINS CLASH WITH EACH OTHER WHILE REMARK 3 RESIDUE PHE106 IN C CHAIN HAS A SYMMETRY RELATED CLASH WITH REMARK 3 ITSELF THE ACTIVE SITE OF EACH CHAIN CONTAINS UNMODELLED REMARK 3 ELECTRON DENSITY PRESUMED TO BE ATP WEAKLY BOUND IN THE ABSENCE REMARK 3 OF BOUND UMP. REMARK 4 REMARK 4 2JJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290035967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.886 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1Z9D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULPHATE, 10% REMARK 280 POLYETHYLENE GLYCOL 3000, 0.1 M IMIDAZOLE (PH 8.0) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 255.93333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 191.95000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 319.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.98333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 127.96667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 255.93333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 319.91667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 191.95000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.98333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 191.95000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 246 REMARK 465 LYS A 247 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 246 REMARK 465 LYS B 247 REMARK 465 MET C -7 REMARK 465 ALA C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLU C 246 REMARK 465 LYS C 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 185 O ASP B 239 2.02 REMARK 500 OD1 ASN A 185 O ASP A 239 2.09 REMARK 500 NH1 ARG B 6 OE1 GLU B 45 2.14 REMARK 500 OD2 ASP A 207 O HOH A 2036 2.17 REMARK 500 NH1 ARG A 6 OE1 GLU A 45 2.18 REMARK 500 OD1 ASN C 193 NE2 GLN C 195 2.18 REMARK 500 O ASN A 175 N SER A 177 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 137 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 PRO A 172 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 PRO B 137 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO B 172 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO B 172 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO C 137 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 -165.16 -74.53 REMARK 500 THR A 20 -101.80 -28.65 REMARK 500 ASN A 22 174.92 157.40 REMARK 500 SER A 23 -115.06 104.86 REMARK 500 ALA A 61 -48.33 -29.88 REMARK 500 MET A 85 -70.05 -51.59 REMARK 500 ASN A 107 145.26 49.61 REMARK 500 VAL A 109 -40.87 -142.17 REMARK 500 HIS A 174 -87.69 -66.24 REMARK 500 ASN A 175 38.51 -49.50 REMARK 500 LYS A 176 -29.74 -0.49 REMARK 500 TYR A 186 -78.33 -63.04 REMARK 500 ASN A 187 -33.44 -34.44 REMARK 500 GLN A 192 23.83 -76.90 REMARK 500 ASN A 193 70.88 30.13 REMARK 500 ASP A 198 138.35 -35.46 REMARK 500 ASP A 239 -163.16 -64.09 REMARK 500 LEU A 242 -153.11 -114.50 REMARK 500 LEU A 243 126.18 -179.63 REMARK 500 VAL A 244 162.90 -47.69 REMARK 500 ASP B 18 -164.34 -70.73 REMARK 500 THR B 20 -103.52 -24.75 REMARK 500 ASN B 22 174.99 158.63 REMARK 500 SER B 23 -107.85 106.16 REMARK 500 MET B 85 -78.81 -53.58 REMARK 500 LEU B 86 -52.89 -22.11 REMARK 500 ASN B 107 147.15 48.15 REMARK 500 VAL B 109 -44.66 -144.69 REMARK 500 ARG B 115 -71.23 -44.76 REMARK 500 PRO B 172 -1.13 -45.36 REMARK 500 HIS B 174 -61.45 -161.87 REMARK 500 ASN B 175 42.66 -53.18 REMARK 500 LYS B 176 -73.26 12.48 REMARK 500 SER B 177 59.84 -90.14 REMARK 500 TYR B 186 -79.59 -59.76 REMARK 500 ASN B 187 -35.86 -32.64 REMARK 500 ASN B 193 73.67 27.38 REMARK 500 ASP B 198 141.99 -32.02 REMARK 500 ASP B 239 -156.20 -70.76 REMARK 500 LEU B 242 -149.74 -115.55 REMARK 500 LEU B 243 127.34 178.10 REMARK 500 ASP C 18 -163.64 -68.90 REMARK 500 THR C 20 -104.34 -29.27 REMARK 500 ASN C 22 174.41 151.92 REMARK 500 SER C 23 -108.76 106.71 REMARK 500 MET C 85 -71.16 -55.30 REMARK 500 ASN C 107 146.49 46.69 REMARK 500 VAL C 109 -47.33 -142.35 REMARK 500 ARG C 115 -70.89 -43.42 REMARK 500 LYS C 173 7.37 -58.25 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1247 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2048 O REMARK 620 2 ATP C1246 O2A 67.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C1247 DBREF 2JJX A -7 0 PDB 2JJX 2JJX -7 0 DBREF 2JJX A 1 247 UNP Q81S73 Q81S73_BACAN 1 247 DBREF 2JJX B -7 0 PDB 2JJX 2JJX -7 0 DBREF 2JJX B 1 247 UNP Q81S73 Q81S73_BACAN 1 247 DBREF 2JJX C -7 0 PDB 2JJX 2JJX -7 0 DBREF 2JJX C 1 247 UNP Q81S73 Q81S73_BACAN 1 247 SEQRES 1 A 255 MET ALA HIS HIS HIS HIS HIS HIS MET ARG PRO TYR LYS SEQRES 2 A 255 ARG VAL LEU ILE LYS LEU SER GLY GLY ALA LEU ALA ASP SEQRES 3 A 255 GLN THR GLY ASN SER PHE ASN SER LYS ARG LEU GLU HIS SEQRES 4 A 255 ILE ALA ASN GLU ILE LEU SER ILE VAL ASP LEU GLY ILE SEQRES 5 A 255 GLU VAL SER ILE VAL ILE GLY GLY GLY ASN ILE PHE ARG SEQRES 6 A 255 GLY HIS LEU ALA GLU GLU TRP GLY ILE ASP ARG VAL GLU SEQRES 7 A 255 ALA ASP ASN ILE GLY THR LEU GLY THR ILE ILE ASN SER SEQRES 8 A 255 LEU MET LEU ARG GLY VAL LEU THR SER LYS THR ASN LYS SEQRES 9 A 255 GLU VAL ARG VAL MET THR SER ILE PRO PHE ASN ALA VAL SEQRES 10 A 255 ALA GLU PRO TYR ILE ARG LEU ARG ALA VAL HIS HIS LEU SEQRES 11 A 255 ASP ASN GLY TYR ILE VAL ILE PHE GLY GLY GLY ASN GLY SEQRES 12 A 255 GLN PRO PHE VAL THR THR ASP TYR PRO SER VAL GLN ARG SEQRES 13 A 255 ALA ILE GLU MET ASN SER ASP ALA ILE LEU VAL ALA LYS SEQRES 14 A 255 GLN GLY VAL ASP GLY VAL PHE THR SER ASP PRO LYS HIS SEQRES 15 A 255 ASN LYS SER ALA LYS MET TYR ARG LYS LEU ASN TYR ASN SEQRES 16 A 255 ASP VAL VAL ARG GLN ASN ILE GLN VAL MET ASP GLN ALA SEQRES 17 A 255 ALA LEU LEU LEU ALA ARG ASP TYR ASN LEU PRO ALA HIS SEQRES 18 A 255 VAL PHE ASN PHE ASP GLU PRO GLY VAL MET ARG ARG ILE SEQRES 19 A 255 CYS LEU GLY GLU HIS VAL GLY THR LEU ILE ASN ASP ASP SEQRES 20 A 255 ALA SER LEU LEU VAL HIS GLU LYS SEQRES 1 B 255 MET ALA HIS HIS HIS HIS HIS HIS MET ARG PRO TYR LYS SEQRES 2 B 255 ARG VAL LEU ILE LYS LEU SER GLY GLY ALA LEU ALA ASP SEQRES 3 B 255 GLN THR GLY ASN SER PHE ASN SER LYS ARG LEU GLU HIS SEQRES 4 B 255 ILE ALA ASN GLU ILE LEU SER ILE VAL ASP LEU GLY ILE SEQRES 5 B 255 GLU VAL SER ILE VAL ILE GLY GLY GLY ASN ILE PHE ARG SEQRES 6 B 255 GLY HIS LEU ALA GLU GLU TRP GLY ILE ASP ARG VAL GLU SEQRES 7 B 255 ALA ASP ASN ILE GLY THR LEU GLY THR ILE ILE ASN SER SEQRES 8 B 255 LEU MET LEU ARG GLY VAL LEU THR SER LYS THR ASN LYS SEQRES 9 B 255 GLU VAL ARG VAL MET THR SER ILE PRO PHE ASN ALA VAL SEQRES 10 B 255 ALA GLU PRO TYR ILE ARG LEU ARG ALA VAL HIS HIS LEU SEQRES 11 B 255 ASP ASN GLY TYR ILE VAL ILE PHE GLY GLY GLY ASN GLY SEQRES 12 B 255 GLN PRO PHE VAL THR THR ASP TYR PRO SER VAL GLN ARG SEQRES 13 B 255 ALA ILE GLU MET ASN SER ASP ALA ILE LEU VAL ALA LYS SEQRES 14 B 255 GLN GLY VAL ASP GLY VAL PHE THR SER ASP PRO LYS HIS SEQRES 15 B 255 ASN LYS SER ALA LYS MET TYR ARG LYS LEU ASN TYR ASN SEQRES 16 B 255 ASP VAL VAL ARG GLN ASN ILE GLN VAL MET ASP GLN ALA SEQRES 17 B 255 ALA LEU LEU LEU ALA ARG ASP TYR ASN LEU PRO ALA HIS SEQRES 18 B 255 VAL PHE ASN PHE ASP GLU PRO GLY VAL MET ARG ARG ILE SEQRES 19 B 255 CYS LEU GLY GLU HIS VAL GLY THR LEU ILE ASN ASP ASP SEQRES 20 B 255 ALA SER LEU LEU VAL HIS GLU LYS SEQRES 1 C 255 MET ALA HIS HIS HIS HIS HIS HIS MET ARG PRO TYR LYS SEQRES 2 C 255 ARG VAL LEU ILE LYS LEU SER GLY GLY ALA LEU ALA ASP SEQRES 3 C 255 GLN THR GLY ASN SER PHE ASN SER LYS ARG LEU GLU HIS SEQRES 4 C 255 ILE ALA ASN GLU ILE LEU SER ILE VAL ASP LEU GLY ILE SEQRES 5 C 255 GLU VAL SER ILE VAL ILE GLY GLY GLY ASN ILE PHE ARG SEQRES 6 C 255 GLY HIS LEU ALA GLU GLU TRP GLY ILE ASP ARG VAL GLU SEQRES 7 C 255 ALA ASP ASN ILE GLY THR LEU GLY THR ILE ILE ASN SER SEQRES 8 C 255 LEU MET LEU ARG GLY VAL LEU THR SER LYS THR ASN LYS SEQRES 9 C 255 GLU VAL ARG VAL MET THR SER ILE PRO PHE ASN ALA VAL SEQRES 10 C 255 ALA GLU PRO TYR ILE ARG LEU ARG ALA VAL HIS HIS LEU SEQRES 11 C 255 ASP ASN GLY TYR ILE VAL ILE PHE GLY GLY GLY ASN GLY SEQRES 12 C 255 GLN PRO PHE VAL THR THR ASP TYR PRO SER VAL GLN ARG SEQRES 13 C 255 ALA ILE GLU MET ASN SER ASP ALA ILE LEU VAL ALA LYS SEQRES 14 C 255 GLN GLY VAL ASP GLY VAL PHE THR SER ASP PRO LYS HIS SEQRES 15 C 255 ASN LYS SER ALA LYS MET TYR ARG LYS LEU ASN TYR ASN SEQRES 16 C 255 ASP VAL VAL ARG GLN ASN ILE GLN VAL MET ASP GLN ALA SEQRES 17 C 255 ALA LEU LEU LEU ALA ARG ASP TYR ASN LEU PRO ALA HIS SEQRES 18 C 255 VAL PHE ASN PHE ASP GLU PRO GLY VAL MET ARG ARG ILE SEQRES 19 C 255 CYS LEU GLY GLU HIS VAL GLY THR LEU ILE ASN ASP ASP SEQRES 20 C 255 ALA SER LEU LEU VAL HIS GLU LYS HET ATP A1246 31 HET ATP B1246 31 HET ATP C1246 31 HET MG C1247 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 ATP 3(C10 H16 N5 O13 P3) FORMUL 7 MG MG 2+ FORMUL 8 HOH *142(H2 O) HELIX 1 1 SER A 12 LEU A 16 5 5 HELIX 2 2 ASN A 25 ASP A 41 1 17 HELIX 3 3 ARG A 57 TRP A 64 1 8 HELIX 4 4 ASP A 67 THR A 94 1 28 HELIX 5 5 ILE A 114 ASN A 124 1 11 HELIX 6 6 THR A 141 MET A 152 1 12 HELIX 7 7 TYR A 186 GLN A 192 1 7 HELIX 8 8 ASP A 198 ASN A 209 1 12 HELIX 9 9 GLY A 221 LEU A 228 1 8 HELIX 10 10 SER B 12 ALA B 17 5 6 HELIX 11 11 ASN B 25 ASP B 41 1 17 HELIX 12 12 ARG B 57 TRP B 64 1 8 HELIX 13 13 ASP B 67 THR B 94 1 28 HELIX 14 14 ILE B 114 ASN B 124 1 11 HELIX 15 15 THR B 141 MET B 152 1 12 HELIX 16 16 TYR B 186 GLN B 192 1 7 HELIX 17 17 ASP B 198 ASN B 209 1 12 HELIX 18 18 GLY B 221 LEU B 228 1 8 HELIX 19 19 SER C 12 ALA C 17 5 6 HELIX 20 20 ASN C 25 ASP C 41 1 17 HELIX 21 21 ARG C 57 TRP C 64 1 8 HELIX 22 22 ASP C 67 THR C 94 1 28 HELIX 23 23 ILE C 114 ASN C 124 1 11 HELIX 24 24 THR C 141 MET C 152 1 12 HELIX 25 25 TYR C 186 GLN C 192 1 7 HELIX 26 26 ASP C 198 ASN C 209 1 12 HELIX 27 27 GLY C 221 LEU C 228 1 8 SHEET 1 AA 9 GLU A 111 PRO A 112 0 SHEET 2 AA 9 VAL A 98 THR A 102 1 O VAL A 100 N GLU A 111 SHEET 3 AA 9 ILE A 127 GLY A 131 1 O ILE A 127 N ARG A 99 SHEET 4 AA 9 GLU A 45 ILE A 50 1 O VAL A 46 N VAL A 128 SHEET 5 AA 9 ARG A 6 LEU A 11 1 O VAL A 7 N SER A 47 SHEET 6 AA 9 ALA A 156 LYS A 161 1 O ALA A 156 N LEU A 8 SHEET 7 AA 9 ALA A 212 ASN A 216 1 O HIS A 213 N VAL A 159 SHEET 8 AA 9 THR A 234 ASN A 237 -1 O THR A 234 N VAL A 214 SHEET 9 AA 9 LYS A 183 ASN A 185 1 O LEU A 184 N ASN A 237 SHEET 1 BA 9 GLU B 111 PRO B 112 0 SHEET 2 BA 9 VAL B 98 THR B 102 1 O VAL B 100 N GLU B 111 SHEET 3 BA 9 ILE B 127 GLY B 131 1 O ILE B 127 N ARG B 99 SHEET 4 BA 9 GLU B 45 ILE B 50 1 O VAL B 46 N VAL B 128 SHEET 5 BA 9 ARG B 6 LEU B 11 1 O VAL B 7 N SER B 47 SHEET 6 BA 9 ALA B 156 LYS B 161 1 O ALA B 156 N LEU B 8 SHEET 7 BA 9 ALA B 212 ASN B 216 1 O HIS B 213 N VAL B 159 SHEET 8 BA 9 THR B 234 ASN B 237 -1 O THR B 234 N VAL B 214 SHEET 9 BA 9 LYS B 183 ASN B 185 1 O LEU B 184 N ASN B 237 SHEET 1 CA 9 GLU C 111 PRO C 112 0 SHEET 2 CA 9 VAL C 98 THR C 102 1 O VAL C 100 N GLU C 111 SHEET 3 CA 9 ILE C 127 GLY C 131 1 O ILE C 127 N ARG C 99 SHEET 4 CA 9 GLU C 45 ILE C 50 1 O VAL C 46 N VAL C 128 SHEET 5 CA 9 ARG C 6 LEU C 11 1 O VAL C 7 N SER C 47 SHEET 6 CA 9 ALA C 156 LYS C 161 1 O ALA C 156 N LEU C 8 SHEET 7 CA 9 ALA C 212 ASN C 216 1 O HIS C 213 N VAL C 159 SHEET 8 CA 9 THR C 234 ASN C 237 -1 O THR C 234 N VAL C 214 SHEET 9 CA 9 LYS C 183 ASN C 185 1 O LEU C 184 N ASN C 237 LINK O HOH A2048 MG MG C1247 1555 1555 2.82 LINK O2A ATP C1246 MG MG C1247 1555 1555 2.25 SITE 1 AC1 15 ARG A 99 ASN A 107 ALA A 108 ALA A 110 SITE 2 AC1 15 PRO A 112 ARG A 117 TYR A 126 HOH A2047 SITE 3 AC1 15 HOH A2048 ILE B 114 LEU B 116 ARG B 117 SITE 4 AC1 15 HIS B 120 HOH B2047 MG C1247 SITE 1 AC2 13 ARG A 117 HIS A 120 HOH A2048 ATP B1246 SITE 2 AC2 13 ARG C 99 ASN C 107 ALA C 108 ALA C 110 SITE 3 AC2 13 GLU C 111 PRO C 112 ARG C 117 TYR C 126 SITE 4 AC2 13 MG C1247 SITE 1 AC3 13 ARG B 99 ASN B 107 ALA B 108 ALA B 110 SITE 2 AC3 13 GLU B 111 ARG B 117 TYR B 126 HOH B2047 SITE 3 AC3 13 ILE C 114 ARG C 117 HIS C 120 ATP C1246 SITE 4 AC3 13 MG C1247 SITE 1 AC4 4 ATP A1246 HOH A2048 ATP B1246 ATP C1246 CRYST1 87.300 87.300 383.900 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011455 0.006613 0.000000 0.00000 SCALE2 0.000000 0.013227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002605 0.00000 MTRIX1 1 -0.500590 0.865670 0.005230 82.78800 1 MTRIX2 1 -0.865680 -0.500560 -0.005540 7.58700 1 MTRIX3 1 -0.002180 -0.007300 0.999970 -0.43000 1 MTRIX1 2 -0.495550 -0.868220 -0.025040 49.81900 1 MTRIX2 2 0.868430 -0.495790 0.003920 -68.80100 1 MTRIX3 2 -0.015820 -0.019810 0.999680 0.22200 1