HEADER OXIDOREDUCTASE 26-AUG-08 2JKC TITLE CRYSTAL STRUCTURE OF E346D OF TRYPTOPHAN 7-HALOGENASE (PRNA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN-DEPENDENT TRYPTOPHAN HALOGENASE PRNA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRYPTOPHAN 7-HALOGENASE; COMPND 5 EC: 1.14.19.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: PRNA; SOURCE 5 EXPRESSION_SYSTEM: PSEUDOMONAS FLUORESCENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 294; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL915 KEYWDS ENZYMATIC HALOGENATION, TRYPTOPHAN HALOGENASE, FLAVIN- DEPENDENT KEYWDS 2 REACTION MECHANISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU,J.H.NAISMITH REVDAT 8 13-DEC-23 2JKC 1 REMARK REVDAT 7 04-MAR-20 2JKC 1 REMARK REVDAT 6 03-OCT-18 2JKC 1 COMPND SOURCE JRNL DBREF REVDAT 5 05-JUL-17 2JKC 1 REMARK REVDAT 4 29-AUG-12 2JKC 1 JRNL REVDAT 3 13-JUL-11 2JKC 1 VERSN REVDAT 2 24-FEB-09 2JKC 1 VERSN REVDAT 1 02-SEP-08 2JKC 0 JRNL AUTH S.FLECKS,E.P.PATALLO,X.ZHU,A.J.ERNYEI,G.SEIFERT,A.SCHNEIDER, JRNL AUTH 2 C.DONG,J.H.NAISMITH,K.H.VAN PEE JRNL TITL NEW INSIGHTS INTO THE MECHANISM OF ENZYMATIC CHLORINATION OF JRNL TITL 2 TRYPTOPHAN. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 47 9533 2008 JRNL REFN ESSN 1521-3773 JRNL PMID 18979475 JRNL DOI 10.1002/ANIE.200802466 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.DONG,S.FLECKS,S.UNVERSUCHT,C.HAUPT,K.VANPEE,J.NAISMITH REMARK 1 TITL TRYPTOPHAN 7-HALOGENASE (PRNA) STRUCTURE SUGGESTS A REMARK 1 TITL 2 MECHANISM FOR REGIOSELECTIVE CHLORINATION REMARK 1 REF SCIENCE V. 309 2216 2005 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 16195462 REMARK 1 DOI 10.1126/SCIENCE.1116510 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 28173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4371 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5948 ; 1.364 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 521 ; 6.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;33.056 ;23.119 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 692 ;13.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.361 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 620 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3414 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1878 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2952 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 352 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.260 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2672 ; 0.633 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4185 ; 1.059 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2042 ; 1.674 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1763 ; 2.649 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 517 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6486 9.3632 -20.3534 REMARK 3 T TENSOR REMARK 3 T11: -0.0007 T22: -0.0920 REMARK 3 T33: -0.0532 T12: -0.0069 REMARK 3 T13: 0.0389 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2322 L22: 1.2064 REMARK 3 L33: 0.5625 L12: -0.3631 REMARK 3 L13: -0.1044 L23: -0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.0345 S13: -0.0157 REMARK 3 S21: -0.0461 S22: 0.0763 S23: 0.0993 REMARK 3 S31: -0.0360 S32: -0.0238 S33: -0.0646 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1518 A 1518 REMARK 3 RESIDUE RANGE : A 1521 A 1521 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4437 20.4637 -27.3857 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0139 REMARK 3 T33: -0.0088 T12: -0.0391 REMARK 3 T13: -0.0005 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.5766 L22: 0.8673 REMARK 3 L33: 3.1355 L12: -0.7573 REMARK 3 L13: -1.7836 L23: 1.6069 REMARK 3 S TENSOR REMARK 3 S11: -0.3260 S12: -0.4766 S13: -0.2289 REMARK 3 S21: -0.7244 S22: 0.8379 S23: 0.2443 REMARK 3 S31: 0.0774 S32: -0.6215 S33: -0.5119 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1520 A 1520 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3881 3.8593 -16.2664 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0012 REMARK 3 T33: 0.0001 T12: 0.0028 REMARK 3 T13: 0.0049 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 42.3386 L22: 52.9170 REMARK 3 L33: 77.0987 L12: -24.9452 REMARK 3 L13: -46.1927 L23: -4.7296 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: 0.9983 S13: 0.7686 REMARK 3 S21: 0.3992 S22: -0.4045 S23: 0.3468 REMARK 3 S31: -0.5973 S32: 0.3972 S33: 0.4961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1290037281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC RIGID BODY REFINEMENT REMARK 200 STARTING MODEL: PDB ENTRY 2AQJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH10 0.2M NACL 1.6 M REMARK 280 (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.31500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.18000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 207.47250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.18000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.15750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.18000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.18000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 207.47250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.18000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.18000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.15750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 138.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 346 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 518 REMARK 465 GLY A 519 REMARK 465 ASP A 520 REMARK 465 ALA A 521 REMARK 465 GLY A 522 REMARK 465 LEU A 523 REMARK 465 SER A 524 REMARK 465 ARG A 525 REMARK 465 GLY A 526 REMARK 465 GLN A 527 REMARK 465 ARG A 528 REMARK 465 GLY A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 LEU A 532 REMARK 465 ALA A 533 REMARK 465 ALA A 534 REMARK 465 GLN A 535 REMARK 465 GLU A 536 REMARK 465 SER A 537 REMARK 465 LEU A 538 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2150 O HOH A 2377 1565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 30 11.71 51.74 REMARK 500 GLN A 31 42.28 -80.74 REMARK 500 PHE A 59 -67.64 -96.73 REMARK 500 ALA A 159 -148.67 -125.06 REMARK 500 ASN A 193 -179.14 -68.77 REMARK 500 PRO A 261 37.51 -78.48 REMARK 500 ASN A 330 -120.06 55.62 REMARK 500 PRO A 344 32.16 -72.92 REMARK 500 ASP A 402 17.86 -141.24 REMARK 500 THR A 446 78.69 -110.88 REMARK 500 ASN A 453 55.07 -108.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 516 ARG A 517 148.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 1520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1521 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AQJ RELATED DB: PDB REMARK 900 THE STRUCTURE OF TRYPTOPHAN 7-HALOGENASE ( PRNA) SUGGESTS REMARK 900 AMECHANISM FOR REGIOSELECTIVE CHLORINATION REMARK 900 RELATED ID: 2APG RELATED DB: PDB REMARK 900 THE STRUCTURE OF TRYPTOPHAN 7-HALOGENASE ( PRNA)SUGGESTS AMECHANISM REMARK 900 FOR REGIOSELECTIVE CHLORINATION REMARK 900 RELATED ID: 2AR8 RELATED DB: PDB REMARK 900 THE STRUCTURE OF TRYPTOPHAN 7-HALOGENASE ( PRNA)SUGGESTS AMECHANISM REMARK 900 FOR REGIOSELECTIVE CHLORINATION REMARK 900 RELATED ID: 2ARD RELATED DB: PDB REMARK 900 THE STRUCTURE OF TRYPTOPHAN 7-HALOGENASE ( PRNA) SUGGESTS REMARK 900 AMECHANISM FOR REGIOSELECTIVE CHLORINATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 E346D MUTATION DBREF 2JKC A 1 538 UNP P95480 PRNA_PSEFL 1 538 SEQADV 2JKC ASP A 346 UNP P95480 GLU 346 ENGINEERED MUTATION SEQRES 1 A 538 MET ASN LYS PRO ILE LYS ASN ILE VAL ILE VAL GLY GLY SEQRES 2 A 538 GLY THR ALA GLY TRP MET ALA ALA SER TYR LEU VAL ARG SEQRES 3 A 538 ALA LEU GLN GLN GLN ALA ASN ILE THR LEU ILE GLU SER SEQRES 4 A 538 ALA ALA ILE PRO ARG ILE GLY VAL GLY GLU ALA THR ILE SEQRES 5 A 538 PRO SER LEU GLN LYS VAL PHE PHE ASP PHE LEU GLY ILE SEQRES 6 A 538 PRO GLU ARG GLU TRP MET PRO GLN VAL ASN GLY ALA PHE SEQRES 7 A 538 LYS ALA ALA ILE LYS PHE VAL ASN TRP ARG LYS SER PRO SEQRES 8 A 538 ASP PRO SER ARG ASP ASP HIS PHE TYR HIS LEU PHE GLY SEQRES 9 A 538 ASN VAL PRO ASN CYS ASP GLY VAL PRO LEU THR HIS TYR SEQRES 10 A 538 TRP LEU ARG LYS ARG GLU GLN GLY PHE GLN GLN PRO MET SEQRES 11 A 538 GLU TYR ALA CYS TYR PRO GLN PRO GLY ALA LEU ASP GLY SEQRES 12 A 538 LYS LEU ALA PRO CYS LEU SER ASP GLY THR ARG GLN MET SEQRES 13 A 538 SER HIS ALA TRP HIS PHE ASP ALA HIS LEU VAL ALA ASP SEQRES 14 A 538 PHE LEU LYS ARG TRP ALA VAL GLU ARG GLY VAL ASN ARG SEQRES 15 A 538 VAL VAL ASP GLU VAL VAL ASP VAL ARG LEU ASN ASN ARG SEQRES 16 A 538 GLY TYR ILE SER ASN LEU LEU THR LYS GLU GLY ARG THR SEQRES 17 A 538 LEU GLU ALA ASP LEU PHE ILE ASP CYS SER GLY MET ARG SEQRES 18 A 538 GLY LEU LEU ILE ASN GLN ALA LEU LYS GLU PRO PHE ILE SEQRES 19 A 538 ASP MET SER ASP TYR LEU LEU CYS ASP SER ALA VAL ALA SEQRES 20 A 538 SER ALA VAL PRO ASN ASP ASP ALA ARG ASP GLY VAL GLU SEQRES 21 A 538 PRO TYR THR SER SER ILE ALA MET ASN SER GLY TRP THR SEQRES 22 A 538 TRP LYS ILE PRO MET LEU GLY ARG PHE GLY SER GLY TYR SEQRES 23 A 538 VAL PHE SER SER HIS PHE THR SER ARG ASP GLN ALA THR SEQRES 24 A 538 ALA ASP PHE LEU LYS LEU TRP GLY LEU SER ASP ASN GLN SEQRES 25 A 538 PRO LEU ASN GLN ILE LYS PHE ARG VAL GLY ARG ASN LYS SEQRES 26 A 538 ARG ALA TRP VAL ASN ASN CYS VAL SER ILE GLY LEU SER SEQRES 27 A 538 SER CYS PHE LEU GLU PRO LEU ASP SER THR GLY ILE TYR SEQRES 28 A 538 PHE ILE TYR ALA ALA LEU TYR GLN LEU VAL LYS HIS PHE SEQRES 29 A 538 PRO ASP THR SER PHE ASP PRO ARG LEU SER ASP ALA PHE SEQRES 30 A 538 ASN ALA GLU ILE VAL HIS MET PHE ASP ASP CYS ARG ASP SEQRES 31 A 538 PHE VAL GLN ALA HIS TYR PHE THR THR SER ARG ASP ASP SEQRES 32 A 538 THR PRO PHE TRP LEU ALA ASN ARG HIS ASP LEU ARG LEU SEQRES 33 A 538 SER ASP ALA ILE LYS GLU LYS VAL GLN ARG TYR LYS ALA SEQRES 34 A 538 GLY LEU PRO LEU THR THR THR SER PHE ASP ASP SER THR SEQRES 35 A 538 TYR TYR GLU THR PHE ASP TYR GLU PHE LYS ASN PHE TRP SEQRES 36 A 538 LEU ASN GLY ASN TYR TYR CYS ILE PHE ALA GLY LEU GLY SEQRES 37 A 538 MET LEU PRO ASP ARG SER LEU PRO LEU LEU GLN HIS ARG SEQRES 38 A 538 PRO GLU SER ILE GLU LYS ALA GLU ALA MET PHE ALA SER SEQRES 39 A 538 ILE ARG ARG GLU ALA GLU ARG LEU ARG THR SER LEU PRO SEQRES 40 A 538 THR ASN TYR ASP TYR LEU ARG SER LEU ARG ASP GLY ASP SEQRES 41 A 538 ALA GLY LEU SER ARG GLY GLN ARG GLY PRO LYS LEU ALA SEQRES 42 A 538 ALA GLN GLU SER LEU HET TRP A1520 15 HET FAD A1518 53 HET CL A1519 1 HET CL A1521 1 HETNAM TRP TRYPTOPHAN HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 2 TRP C11 H12 N2 O2 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *396(H2 O) HELIX 1 1 GLY A 14 LEU A 28 1 15 HELIX 2 2 PRO A 53 PHE A 59 1 7 HELIX 3 3 PHE A 59 GLY A 64 1 6 HELIX 4 4 PRO A 66 MET A 71 1 6 HELIX 5 5 PRO A 72 VAL A 74 5 3 HELIX 6 6 LEU A 114 GLN A 124 1 11 HELIX 7 7 PRO A 129 TYR A 135 1 7 HELIX 8 8 GLN A 137 GLY A 143 1 7 HELIX 9 9 ASP A 163 ARG A 178 1 16 HELIX 10 10 SER A 218 GLY A 222 5 5 HELIX 11 11 ASN A 2 LEU A 229 5 228 HELIX 12 12 ASP A 253 GLY A 258 1 6 HELIX 13 13 SER A 294 GLY A 307 1 14 HELIX 14 14 GLU A 343 SER A 347 5 5 HELIX 15 15 THR A 348 HIS A 363 1 16 HELIX 16 16 ASP A 370 THR A 399 1 30 HELIX 17 17 THR A 404 ASP A 413 1 10 HELIX 18 18 SER A 417 GLY A 430 1 14 HELIX 19 19 ASP A 439 TYR A 444 1 6 HELIX 20 20 THR A 446 ASN A 453 1 8 HELIX 21 21 LEU A 456 LEU A 467 1 12 HELIX 22 22 LEU A 475 HIS A 480 5 6 HELIX 23 23 ARG A 481 LEU A 506 1 26 HELIX 24 24 THR A 508 ARG A 517 1 10 SHEET 1 AA 6 ASN A 181 VAL A 184 0 SHEET 2 AA 6 ASN A 33 GLU A 38 1 O ILE A 34 N ASN A 181 SHEET 3 AA 6 ASN A 7 VAL A 11 1 O ILE A 8 N THR A 35 SHEET 4 AA 6 LEU A 213 ASP A 216 1 O LEU A 213 N VAL A 9 SHEET 5 AA 6 CYS A 332 SER A 334 1 O VAL A 333 N ASP A 216 SHEET 6 AA 6 TRP A 328 VAL A 329 -1 O VAL A 329 N CYS A 332 SHEET 1 AB 2 ALA A 77 LYS A 79 0 SHEET 2 AB 2 ALA A 159 HIS A 161 -1 O ALA A 159 N LYS A 79 SHEET 1 AC 7 HIS A 98 LEU A 102 0 SHEET 2 AC 7 ALA A 81 VAL A 85 -1 O ILE A 82 N HIS A 101 SHEET 3 AC 7 THR A 263 ALA A 267 1 O THR A 263 N LYS A 83 SHEET 4 AC 7 GLY A 271 MET A 278 -1 O THR A 273 N ILE A 266 SHEET 5 AC 7 ARG A 281 PHE A 288 -1 O ARG A 281 N MET A 278 SHEET 6 AC 7 SER A 244 PRO A 251 -1 O SER A 244 N PHE A 288 SHEET 7 AC 7 ASN A 315 LYS A 318 -1 O ASN A 315 N ALA A 247 SHEET 1 AD 2 ASN A 108 CYS A 109 0 SHEET 2 AD 2 VAL A 112 PRO A 113 -1 O VAL A 112 N CYS A 109 SHEET 1 AE 3 VAL A 187 LEU A 192 0 SHEET 2 AE 3 ILE A 198 THR A 203 -1 N SER A 199 O ARG A 191 SHEET 3 AE 3 THR A 208 LEU A 209 -1 O LEU A 209 N LEU A 201 SHEET 1 AF 3 PHE A 233 ASP A 235 0 SHEET 2 AF 3 GLY A 322 ASN A 324 -1 O ARG A 323 N ILE A 234 SHEET 3 AF 3 CYS A 340 PHE A 341 -1 O PHE A 341 N GLY A 322 SITE 1 AC1 37 GLY A 12 GLY A 13 GLY A 14 THR A 15 SITE 2 AC1 37 ALA A 16 SER A 39 ILE A 42 ARG A 44 SITE 3 AC1 37 ILE A 45 VAL A 47 GLY A 48 ALA A 50 SITE 4 AC1 37 ASP A 185 GLU A 186 VAL A 187 CYS A 217 SITE 5 AC1 37 SER A 218 GLY A 219 ARG A 221 GLY A 336 SITE 6 AC1 37 LEU A 337 PHE A 341 PRO A 344 GLY A 349 SITE 7 AC1 37 ILE A 350 CL A1521 HOH A2006 HOH A2021 SITE 8 AC1 37 HOH A2258 HOH A2388 HOH A2389 HOH A2390 SITE 9 AC1 37 HOH A2391 HOH A2392 HOH A2393 HOH A2394 SITE 10 AC1 37 HOH A2395 SITE 1 AC2 4 VAL A 106 GLY A 458 HOH A2344 HOH A2346 SITE 1 AC3 13 ILE A 52 PRO A 53 HIS A 101 PHE A 103 SITE 2 AC3 13 ASP A 346 TYR A 443 TYR A 444 GLU A 450 SITE 3 AC3 13 PHE A 454 TRP A 455 ASN A 459 HOH A2338 SITE 4 AC3 13 HOH A2396 SITE 1 AC4 7 PRO A 344 SER A 347 THR A 348 GLY A 349 SITE 2 AC4 7 FAD A1518 HOH A2254 HOH A2259 CRYST1 68.360 68.360 276.630 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003615 0.00000