HEADER OXIDOREDUCTASE 01-SEP-08 2JKX TITLE GALACTOSE OXIDASE. MATGO. COPPER FREE, EXPRESSED IN PICHIA PASTORIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 42-680; COMPND 5 SYNONYM: GAO, GOASE, GO; COMPND 6 EC: 1.1.3.9; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THIOETHER BOND BETWEEN CYS228 AND TYR272 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE; SOURCE 3 ORGANISM_TAXID: 5518; SOURCE 4 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAB KEYWDS METAL-BINDING, THIOETHER BOND, OXIDOREDUCTASE, COPPER, SECRETED, KEYWDS 2 OXIDASES, KELCH REPEAT, COPPER ENZYMES, ENZYME CATALYSIS, PROTEIN KEYWDS 3 ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR S.E.DEACON,K.MAHMOUD,R.K.SPOONER,S.J.FIRBANK,P.F.KNOWLES, AUTHOR 2 S.E.V.PHILLIPS,M.J.MCPHERSON REVDAT 4 13-DEC-23 2JKX 1 LINK REVDAT 3 24-JUL-19 2JKX 1 REMARK REVDAT 2 24-FEB-09 2JKX 1 VERSN REVDAT 1 09-SEP-08 2JKX 0 JRNL AUTH S.E.DEACON,K.MAHMOUD,R.K.SPOONER,S.J.FIRBANK,P.F.KNOWLES, JRNL AUTH 2 S.E.V.PHILLIPS,M.J.MCPHERSON JRNL TITL ENHANCED FRUCTOSE OXIDASE ACTIVITY IN A GALACTOSE OXIDASE JRNL TITL 2 VARIANT JRNL REF CHEMBIOCHEM V. 5 972 2004 JRNL REFN ISSN 1439-4227 JRNL PMID 15239055 JRNL DOI 10.1002/CBIC.200300810 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 48323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5409 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 377 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 599 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.461 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4970 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6779 ; 1.265 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 6.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;34.793 ;23.971 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;12.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.811 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3874 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2437 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3381 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 588 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3250 ; 0.682 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5128 ; 1.080 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 1.626 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1649 ; 2.345 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1290037381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 38.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GOG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEF 8000, 100MM MES PH5.9, 200MM REMARK 280 CALCIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.47500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2179 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CD CE NZ REMARK 470 GLN A 135 CD OE1 NE2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 228 CE1 TYR A 272 1.65 REMARK 500 OE1 GLN A 480 OH TYR A 484 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 74.94 -116.32 REMARK 500 LYS A 60 -39.82 72.31 REMARK 500 SER A 187 -88.97 -108.44 REMARK 500 SER A 188 -153.69 -167.71 REMARK 500 LEU A 312 71.55 -118.31 REMARK 500 ALA A 323 32.68 -96.41 REMARK 500 SER A 432 -131.27 50.93 REMARK 500 PHE A 464 -0.25 76.04 REMARK 500 ASP A 466 35.55 -92.01 REMARK 500 THR A 468 43.75 35.16 REMARK 500 VAL A 494 -131.09 -116.94 REMARK 500 THR A 582 -7.68 83.07 REMARK 500 VAL A 612 -60.74 -91.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1641 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 29 O REMARK 620 2 ASP A 32 OD1 79.8 REMARK 620 3 ASN A 34 O 164.8 90.1 REMARK 620 4 THR A 37 O 97.6 140.3 82.9 REMARK 620 5 THR A 37 OG1 87.6 66.7 78.0 73.6 REMARK 620 6 ALA A 141 O 86.9 142.9 107.8 75.5 147.5 REMARK 620 7 GLU A 142 OE2 108.1 74.8 79.7 140.8 135.0 76.8 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1640 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1641 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T2X RELATED DB: PDB REMARK 900 GLACTOSE OXIDASE C383S MUTANT IDENTIFIED BY DIRECTEDEVOLUTION REMARK 900 RELATED ID: 1GOH RELATED DB: PDB REMARK 900 GALACTOSE OXIDASE (APO FORM) REMARK 900 RELATED ID: 2VZ3 RELATED DB: PDB REMARK 900 BLEACHED GALACTOSE OXIDASE REMARK 900 RELATED ID: 1GOF RELATED DB: PDB REMARK 900 GALACTOSE OXIDASE (PH 4.5) REMARK 900 RELATED ID: 2VZ1 RELATED DB: PDB REMARK 900 PREMAT-GALACTOSE OXIDASE REMARK 900 RELATED ID: 1K3I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PRECURSOR OF GALACTOSE OXIDASE REMARK 900 RELATED ID: 1GOG RELATED DB: PDB REMARK 900 GALACTOSE OXIDASE (PH 7.0) DBREF 2JKX A 1 639 UNP Q01745 GAOA_GIBZE 42 680 SEQRES 1 A 639 ALA SER ALA PRO ILE GLY SER ALA ILE SER ARG ASN ASN SEQRES 2 A 639 TRP ALA VAL THR CYS ASP SER ALA GLN SER GLY ASN GLU SEQRES 3 A 639 CYS ASN LYS ALA ILE ASP GLY ASN LYS ASP THR PHE TRP SEQRES 4 A 639 HIS THR PHE TYR GLY ALA ASN GLY ASP PRO LYS PRO PRO SEQRES 5 A 639 HIS THR TYR THR ILE ASP MET LYS THR THR GLN ASN VAL SEQRES 6 A 639 ASN GLY LEU SER MET LEU PRO ARG GLN ASP GLY ASN GLN SEQRES 7 A 639 ASN GLY TRP ILE GLY ARG HIS GLU VAL TYR LEU SER SER SEQRES 8 A 639 ASP GLY THR ASN TRP GLY SER PRO VAL ALA SER GLY SER SEQRES 9 A 639 TRP PHE ALA ASP SER THR THR LYS TYR SER ASN PHE GLU SEQRES 10 A 639 THR ARG PRO ALA ARG TYR VAL ARG LEU VAL ALA ILE THR SEQRES 11 A 639 GLU ALA ASN GLY GLN PRO TRP THR SER ILE ALA GLU ILE SEQRES 12 A 639 ASN VAL PHE GLN ALA SER SER TYR THR ALA PRO GLN PRO SEQRES 13 A 639 GLY LEU GLY ARG TRP GLY PRO THR ILE ASP LEU PRO ILE SEQRES 14 A 639 VAL PRO ALA ALA ALA ALA ILE GLU PRO THR SER GLY ARG SEQRES 15 A 639 VAL LEU MET TRP SER SER TYR ARG ASN ASP ALA PHE GLY SEQRES 16 A 639 GLY SER PRO GLY GLY ILE THR LEU THR SER SER TRP ASP SEQRES 17 A 639 PRO SER THR GLY ILE VAL SER ASP ARG THR VAL THR VAL SEQRES 18 A 639 THR LYS HIS ASP MET PHE CYS PRO GLY ILE SER MET ASP SEQRES 19 A 639 GLY ASN GLY GLN ILE VAL VAL THR GLY GLY ASN ASP ALA SEQRES 20 A 639 LYS LYS THR SER LEU TYR ASP SER SER SER ASP SER TRP SEQRES 21 A 639 ILE PRO GLY PRO ASP MET GLN VAL ALA ARG GLY TYR GLN SEQRES 22 A 639 SER SER ALA THR MET SER ASP GLY ARG VAL PHE THR ILE SEQRES 23 A 639 GLY GLY SER TRP SER GLY GLY VAL PHE GLU LYS ASN GLY SEQRES 24 A 639 GLU VAL TYR SER PRO SER SER LYS THR TRP THR SER LEU SEQRES 25 A 639 PRO ASN ALA LYS VAL ASN PRO MET LEU THR ALA ASP LYS SEQRES 26 A 639 GLN GLY LEU TYR ARG SER ASP ASN HIS ALA TRP LEU PHE SEQRES 27 A 639 GLY TRP LYS LYS GLY SER VAL PHE GLN ALA GLY PRO SER SEQRES 28 A 639 THR ALA MET ASN TRP TYR TYR THR SER GLY SER GLY ASP SEQRES 29 A 639 VAL LYS SER ALA GLY LYS ARG GLN SER ASN ARG GLY VAL SEQRES 30 A 639 ALA PRO ASP ALA MET CYS GLY ASN ALA VAL MET TYR ASP SEQRES 31 A 639 ALA VAL LYS GLY LYS ILE LEU THR PHE GLY GLY SER PRO SEQRES 32 A 639 ASP TYR GLN ASP SER ASP ALA THR THR ASN ALA HIS ILE SEQRES 33 A 639 ILE THR LEU GLY GLU PRO GLY THR SER PRO ASN THR VAL SEQRES 34 A 639 PHE ALA SER ASN GLY LEU TYR PHE ALA ARG THR PHE HIS SEQRES 35 A 639 THR SER VAL VAL LEU PRO ASP GLY SER THR PHE ILE THR SEQRES 36 A 639 GLY GLY GLN ARG ARG GLY ILE PRO PHE GLU ASP SER THR SEQRES 37 A 639 PRO VAL PHE THR PRO GLU ILE TYR VAL PRO GLU GLN ASP SEQRES 38 A 639 THR PHE TYR LYS GLN ASN PRO ASN SER ILE VAL ARG VAL SEQRES 39 A 639 TYR HIS SER ILE SER LEU LEU LEU PRO ASP GLY ARG VAL SEQRES 40 A 639 PHE ASN GLY GLY GLY GLY LEU CYS GLY ASP CYS THR THR SEQRES 41 A 639 ASN HIS PHE ASP ALA GLN ILE PHE THR PRO ASN TYR LEU SEQRES 42 A 639 TYR ASN SER ASN GLY ASN LEU ALA THR ARG PRO LYS ILE SEQRES 43 A 639 THR ARG THR SER THR GLN SER VAL LYS VAL GLY GLY ARG SEQRES 44 A 639 ILE THR ILE SER THR ASP SER SER ILE SER LYS ALA SER SEQRES 45 A 639 LEU ILE ARG TYR GLY THR ALA THR HIS THR VAL ASN THR SEQRES 46 A 639 ASP GLN ARG ARG ILE PRO LEU THR LEU THR ASN ASN GLY SEQRES 47 A 639 GLY ASN SER TYR SER PHE GLN VAL PRO SER ASP SER GLY SEQRES 48 A 639 VAL ALA LEU PRO GLY TYR TRP MET LEU PHE VAL MET ASN SEQRES 49 A 639 SER ALA GLY VAL PRO SER VAL ALA SER THR ILE ARG VAL SEQRES 50 A 639 THR GLN HET ACT A1640 4 HET CA A1641 1 HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 CA CA 2+ FORMUL 4 HOH *599(H2 O) HELIX 1 1 GLU A 26 ASP A 32 5 7 HELIX 2 2 TYR A 43 GLY A 47 5 5 HELIX 3 3 VAL A 317 LEU A 321 5 5 HELIX 4 4 GLY A 327 ASP A 332 1 6 HELIX 5 5 LYS A 341 GLY A 343 5 3 HELIX 6 6 PRO A 478 ASP A 481 5 4 HELIX 7 7 PRO A 530 LEU A 533 5 4 SHEET 1 AA 4 SER A 7 ALA A 8 0 SHEET 2 AA 4 GLU A 142 GLN A 147 -1 O GLN A 147 N SER A 7 SHEET 3 AA 4 HIS A 53 LEU A 71 -1 N ASN A 66 O PHE A 146 SHEET 4 AA 4 ALA A 15 CYS A 18 -1 O ALA A 15 N ASP A 58 SHEET 1 AB10 SER A 7 ALA A 8 0 SHEET 2 AB10 GLU A 142 GLN A 147 -1 O GLN A 147 N SER A 7 SHEET 3 AB10 HIS A 53 LEU A 71 -1 N ASN A 66 O PHE A 146 SHEET 4 AB10 LYS A 112 ALA A 128 -1 O LYS A 112 N MET A 70 SHEET 5 AB10 ARG A 84 SER A 90 -1 O GLU A 86 N VAL A 127 SHEET 6 AB10 ALA A 101 SER A 104 -1 O ALA A 101 N VAL A 87 SHEET 7 AB10 ARG A 160 ASP A 166 1 O THR A 164 N SER A 102 SHEET 8 AB10 ASP A 524 THR A 529 -1 O ALA A 525 N ILE A 165 SHEET 9 AB10 VAL A 507 GLY A 511 -1 O VAL A 507 N PHE A 528 SHEET 10 AB10 SER A 497 LEU A 501 -1 O ILE A 498 N GLY A 510 SHEET 1 AC 2 TRP A 39 HIS A 40 0 SHEET 2 AC 2 SER A 139 ILE A 140 -1 O ILE A 140 N TRP A 39 SHEET 1 AD 5 VAL A 214 VAL A 219 0 SHEET 2 AD 5 THR A 202 TRP A 207 -1 O THR A 202 N VAL A 219 SHEET 3 AD 5 VAL A 183 TRP A 186 -1 O VAL A 183 N TRP A 207 SHEET 4 AD 5 ALA A 173 ILE A 176 -1 O ALA A 173 N TRP A 186 SHEET 5 AD 5 THR A 578 THR A 580 -1 O ALA A 579 N ALA A 174 SHEET 1 AE 4 GLY A 230 MET A 233 0 SHEET 2 AE 4 GLN A 238 THR A 242 -1 O VAL A 240 N SER A 232 SHEET 3 AE 4 THR A 250 ASP A 254 -1 O SER A 251 N VAL A 241 SHEET 4 AE 4 SER A 259 PRO A 262 -1 O SER A 259 N ASP A 254 SHEET 1 AF 4 SER A 274 THR A 277 0 SHEET 2 AF 4 VAL A 283 ILE A 286 -1 O PHE A 284 N ALA A 276 SHEET 3 AF 4 GLY A 299 SER A 303 -1 O GLU A 300 N THR A 285 SHEET 4 AF 4 THR A 308 LEU A 312 -1 O THR A 308 N SER A 303 SHEET 1 AG 4 LEU A 337 GLY A 339 0 SHEET 2 AG 4 VAL A 345 GLN A 347 -1 O PHE A 346 N PHE A 338 SHEET 3 AG 4 ALA A 353 TYR A 358 -1 O ASN A 355 N GLN A 347 SHEET 4 AG 4 ASP A 364 LYS A 370 -1 O ASP A 364 N TYR A 358 SHEET 1 AH 2 GLN A 372 SER A 373 0 SHEET 2 AH 2 GLY A 376 VAL A 377 -1 O GLY A 376 N SER A 373 SHEET 1 AI 4 ASN A 385 ASP A 390 0 SHEET 2 AI 4 LYS A 395 PHE A 399 -1 O LYS A 395 N ASP A 390 SHEET 3 AI 4 ALA A 414 THR A 418 -1 O HIS A 415 N THR A 398 SHEET 4 AI 4 ASN A 427 PHE A 430 -1 O ASN A 427 N THR A 418 SHEET 1 AJ 4 THR A 443 VAL A 446 0 SHEET 2 AJ 4 THR A 452 THR A 455 -1 O PHE A 453 N VAL A 445 SHEET 3 AJ 4 GLU A 474 VAL A 477 -1 O GLU A 474 N ILE A 454 SHEET 4 AJ 4 THR A 482 LYS A 485 -1 O THR A 482 N VAL A 477 SHEET 1 AK 4 ILE A 546 THR A 549 0 SHEET 2 AK 4 ARG A 559 THR A 564 -1 O SER A 563 N THR A 547 SHEET 3 AK 4 SER A 601 GLN A 605 -1 O TYR A 602 N ILE A 562 SHEET 4 AK 4 THR A 595 ASN A 596 -1 O THR A 595 N SER A 603 SHEET 1 AL 5 SER A 553 LYS A 555 0 SHEET 2 AL 5 SER A 633 THR A 638 1 O ARG A 636 N VAL A 554 SHEET 3 AL 5 GLY A 616 ASN A 624 -1 O GLY A 616 N VAL A 637 SHEET 4 AL 5 ILE A 568 ARG A 575 -1 N SER A 569 O MET A 623 SHEET 5 AL 5 ARG A 589 PRO A 591 -1 O ILE A 590 N LEU A 573 SSBOND 1 CYS A 18 CYS A 27 1555 1555 2.02 SSBOND 2 CYS A 515 CYS A 518 1555 1555 2.04 LINK O LYS A 29 CA CA A1641 1555 1555 2.31 LINK OD1 ASP A 32 CA CA A1641 1555 1555 2.54 LINK O ASN A 34 CA CA A1641 1555 1555 2.32 LINK O THR A 37 CA CA A1641 1555 1555 2.32 LINK OG1 THR A 37 CA CA A1641 1555 1555 2.55 LINK O ALA A 141 CA CA A1641 1555 1555 2.43 LINK OE2 GLU A 142 CA CA A1641 1555 1555 2.32 CISPEP 1 PRO A 51 PRO A 52 0 7.28 CISPEP 2 GLY A 162 PRO A 163 0 5.32 CISPEP 3 GLY A 349 PRO A 350 0 4.86 SITE 1 AC1 10 ARG A 371 ALA A 378 ALA A 381 THR A 398 SITE 2 AC1 10 PHE A 399 GLY A 400 ASN A 413 ALA A 414 SITE 3 AC1 10 HIS A 415 HOH A2599 SITE 1 AC2 6 LYS A 29 ASP A 32 ASN A 34 THR A 37 SITE 2 AC2 6 ALA A 141 GLU A 142 CRYST1 96.950 88.520 85.350 90.00 117.24 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010315 0.000000 0.005310 0.00000 SCALE2 0.000000 0.011297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013178 0.00000