data_2JLJ # _entry.id 2JLJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JLJ PDBE EBI-37203 WWPDB D_1290037203 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2JLI unspecified 'ATOMIC RESOLUTION STRUCTURE OF THE CYTOPLASMIC DOMAIN OF YERSINIA PESTIS YSCU, A REGULATORY SWITCH INVOLVED IN TYPE III SECRETION' PDB 2JLH unspecified 'CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF YERSINIA PESTIS YSCU N263A MUTANT' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JLJ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-09-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lountos, G.T.' 1 'Austin, B.P.' 2 'Nallamsetty, S.' 3 'Waugh, D.S.' 4 # _citation.id primary _citation.title 'Atomic Resolution Structure of the Cytoplasmic Domain of Yersinia Pestis Yscu, a Regulatory Switch Involved in Type III Secretion.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 18 _citation.page_first 467 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19165725 _citation.pdbx_database_id_DOI 10.1002/PRO.56 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lountos, G.T.' 1 primary 'Austin, B.P.' 2 primary 'Nallamsetty, S.' 3 primary 'Waugh, D.S.' 4 # _cell.entry_id 2JLJ _cell.length_a 66.041 _cell.length_b 66.041 _cell.length_c 70.730 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JLJ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'YOP PROTEINS TRANSLOCATION PROTEIN U' 16881.467 1 ? YES 'CYTOPLASMIC DOMAIN, RESIDUES 211-354' ? 2 water nat water 18.015 172 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YSCU # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGILYKRGETPLPLVTFKYTDA QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML ; _entity_poly.pdbx_seq_one_letter_code_can ;IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGILYKRGETPLPLVTFKYTDA QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LYS n 1 3 GLU n 1 4 LEU n 1 5 LYS n 1 6 MET n 1 7 SER n 1 8 LYS n 1 9 ASP n 1 10 GLU n 1 11 ILE n 1 12 LYS n 1 13 ARG n 1 14 GLU n 1 15 TYR n 1 16 LYS n 1 17 GLU n 1 18 MET n 1 19 GLU n 1 20 GLY n 1 21 SER n 1 22 PRO n 1 23 GLU n 1 24 ILE n 1 25 LYS n 1 26 SER n 1 27 LYS n 1 28 ARG n 1 29 ARG n 1 30 GLN n 1 31 PHE n 1 32 HIS n 1 33 GLN n 1 34 GLU n 1 35 ILE n 1 36 GLN n 1 37 SER n 1 38 ARG n 1 39 ASN n 1 40 MET n 1 41 ARG n 1 42 GLU n 1 43 ASN n 1 44 VAL n 1 45 LYS n 1 46 ARG n 1 47 SER n 1 48 SER n 1 49 VAL n 1 50 VAL n 1 51 VAL n 1 52 ALA n 1 53 ALA n 1 54 ALA n 1 55 THR n 1 56 HIS n 1 57 ILE n 1 58 ALA n 1 59 ILE n 1 60 GLY n 1 61 ILE n 1 62 LEU n 1 63 TYR n 1 64 LYS n 1 65 ARG n 1 66 GLY n 1 67 GLU n 1 68 THR n 1 69 PRO n 1 70 LEU n 1 71 PRO n 1 72 LEU n 1 73 VAL n 1 74 THR n 1 75 PHE n 1 76 LYS n 1 77 TYR n 1 78 THR n 1 79 ASP n 1 80 ALA n 1 81 GLN n 1 82 VAL n 1 83 GLN n 1 84 THR n 1 85 VAL n 1 86 ARG n 1 87 LYS n 1 88 ILE n 1 89 ALA n 1 90 GLU n 1 91 GLU n 1 92 GLU n 1 93 GLY n 1 94 VAL n 1 95 PRO n 1 96 ILE n 1 97 LEU n 1 98 GLN n 1 99 ARG n 1 100 ILE n 1 101 PRO n 1 102 LEU n 1 103 ALA n 1 104 ARG n 1 105 ALA n 1 106 LEU n 1 107 TYR n 1 108 TRP n 1 109 ASP n 1 110 ALA n 1 111 LEU n 1 112 VAL n 1 113 ASP n 1 114 HIS n 1 115 TYR n 1 116 ILE n 1 117 PRO n 1 118 ALA n 1 119 GLU n 1 120 GLN n 1 121 ILE n 1 122 GLU n 1 123 ALA n 1 124 THR n 1 125 ALA n 1 126 GLU n 1 127 VAL n 1 128 LEU n 1 129 ARG n 1 130 TRP n 1 131 LEU n 1 132 GLU n 1 133 ARG n 1 134 GLN n 1 135 ASN n 1 136 ILE n 1 137 GLU n 1 138 LYS n 1 139 GLN n 1 140 HIS n 1 141 SER n 1 142 GLU n 1 143 MET n 1 144 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'YERSINIA PESTIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 632 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PSN2006 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YSCU_YERPE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P69986 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JLJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P69986 _struct_ref_seq.db_align_beg 211 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 354 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 211 _struct_ref_seq.pdbx_auth_seq_align_end 354 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JLJ ALA A 53 ? UNP P69986 ASN 263 'engineered mutation' 263 1 1 2JLJ ALA A 54 ? UNP P69986 PRO 264 'engineered mutation' 264 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JLJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 49.8 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM HEPES PH 7, 1 M SODIUM MALONATE PH 7, 0.75 M SODIUM CHLORIDE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-02-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JLJ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.30 _reflns.number_obs 37461 _reflns.number_all ? _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.34 _reflns_shell.percent_possible_all 66.5 _reflns_shell.Rmerge_I_obs 0.59 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.60 _reflns_shell.pdbx_redundancy 3.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JLJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 35584 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.28 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.220 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1877 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 17.99 _refine.aniso_B[1][1] 0.44000 _refine.aniso_B[2][2] 0.44000 _refine.aniso_B[3][3] -0.88000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.056 _refine.pdbx_overall_ESU_R_Free 0.059 _refine.overall_SU_ML 0.036 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.844 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 916 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 1088 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 48.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 967 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 670 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.701 1.955 ? 1323 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.061 3.000 ? 1637 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.414 5.000 ? 126 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.445 22.955 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.140 15.000 ? 173 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.381 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 154 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 1072 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 196 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.004 1.500 ? 594 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.784 2.000 ? 971 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.696 3.000 ? 373 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.267 4.500 ? 346 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.34 _refine_ls_shell.number_reflns_R_work 1885 _refine_ls_shell.R_factor_R_work 0.4170 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3900 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JLJ _struct.title 'Crystal Structure of the cytoplasmic domain of Yersinia pestis YscU N263A P264A mutant' _struct.pdbx_descriptor 'YOP PROTEINS TRANSLOCATION PROTEIN U' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JLJ _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'CELL MEMBRANE, TRANSMEMBRANE, YERSINIA PESITS, PROTEIN TRANSPORT, TYPE III SECRETION SYSTEM, MEMBRANE, VIRULENCE, TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 21 ? GLN A 36 ? SER A 231 GLN A 246 1 ? 16 HELX_P HELX_P2 2 ASN A 39 ? ARG A 46 ? ASN A 249 ARG A 256 1 ? 8 HELX_P HELX_P3 3 ASP A 79 ? GLY A 93 ? ASP A 289 GLY A 303 1 ? 15 HELX_P HELX_P4 4 ARG A 99 ? ALA A 110 ? ARG A 309 ALA A 320 1 ? 12 HELX_P HELX_P5 5 PRO A 117 ? GLU A 119 ? PRO A 327 GLU A 329 5 ? 3 HELX_P HELX_P6 6 GLN A 120 ? GLN A 134 ? GLN A 330 GLN A 344 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 72 ? THR A 78 ? LEU A 282 THR A 288 AA 2 ILE A 57 ? LEU A 62 ? ILE A 267 LEU A 272 AA 3 VAL A 49 ? ALA A 53 ? VAL A 259 ALA A 263 AA 4 ILE A 96 ? GLN A 98 ? ILE A 306 GLN A 308 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 77 ? N TYR A 287 O ALA A 58 ? O ALA A 268 AA 2 3 N ILE A 61 ? N ILE A 271 O VAL A 49 ? O VAL A 259 AA 3 4 N ALA A 52 ? N ALA A 262 O LEU A 97 ? O LEU A 307 # _database_PDB_matrix.entry_id 2JLJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JLJ _atom_sites.fract_transf_matrix[1][1] 0.015142 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015142 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014138 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 211 ? ? ? A . n A 1 2 LYS 2 212 ? ? ? A . n A 1 3 GLU 3 213 ? ? ? A . n A 1 4 LEU 4 214 ? ? ? A . n A 1 5 LYS 5 215 ? ? ? A . n A 1 6 MET 6 216 ? ? ? A . n A 1 7 SER 7 217 ? ? ? A . n A 1 8 LYS 8 218 ? ? ? A . n A 1 9 ASP 9 219 ? ? ? A . n A 1 10 GLU 10 220 ? ? ? A . n A 1 11 ILE 11 221 ? ? ? A . n A 1 12 LYS 12 222 ? ? ? A . n A 1 13 ARG 13 223 ? ? ? A . n A 1 14 GLU 14 224 ? ? ? A . n A 1 15 TYR 15 225 ? ? ? A . n A 1 16 LYS 16 226 ? ? ? A . n A 1 17 GLU 17 227 ? ? ? A . n A 1 18 MET 18 228 ? ? ? A . n A 1 19 GLU 19 229 ? ? ? A . n A 1 20 GLY 20 230 230 GLY GLY A . n A 1 21 SER 21 231 231 SER SER A . n A 1 22 PRO 22 232 232 PRO PRO A . n A 1 23 GLU 23 233 233 GLU GLU A . n A 1 24 ILE 24 234 234 ILE ILE A . n A 1 25 LYS 25 235 235 LYS LYS A . n A 1 26 SER 26 236 236 SER SER A . n A 1 27 LYS 27 237 237 LYS LYS A . n A 1 28 ARG 28 238 238 ARG ARG A . n A 1 29 ARG 29 239 239 ARG ARG A . n A 1 30 GLN 30 240 240 GLN GLN A . n A 1 31 PHE 31 241 241 PHE PHE A . n A 1 32 HIS 32 242 242 HIS HIS A . n A 1 33 GLN 33 243 243 GLN GLN A . n A 1 34 GLU 34 244 244 GLU GLU A . n A 1 35 ILE 35 245 245 ILE ILE A . n A 1 36 GLN 36 246 246 GLN GLN A . n A 1 37 SER 37 247 247 SER SER A . n A 1 38 ARG 38 248 248 ARG ARG A . n A 1 39 ASN 39 249 249 ASN ASN A . n A 1 40 MET 40 250 250 MET MET A . n A 1 41 ARG 41 251 251 ARG ARG A . n A 1 42 GLU 42 252 252 GLU GLU A . n A 1 43 ASN 43 253 253 ASN ASN A . n A 1 44 VAL 44 254 254 VAL VAL A . n A 1 45 LYS 45 255 255 LYS LYS A . n A 1 46 ARG 46 256 256 ARG ARG A . n A 1 47 SER 47 257 257 SER SER A . n A 1 48 SER 48 258 258 SER SER A . n A 1 49 VAL 49 259 259 VAL VAL A . n A 1 50 VAL 50 260 260 VAL VAL A . n A 1 51 VAL 51 261 261 VAL VAL A . n A 1 52 ALA 52 262 262 ALA ALA A . n A 1 53 ALA 53 263 263 ALA ALA A . n A 1 54 ALA 54 264 264 ALA ALA A . n A 1 55 THR 55 265 265 THR THR A . n A 1 56 HIS 56 266 266 HIS HIS A . n A 1 57 ILE 57 267 267 ILE ILE A . n A 1 58 ALA 58 268 268 ALA ALA A . n A 1 59 ILE 59 269 269 ILE ILE A . n A 1 60 GLY 60 270 270 GLY GLY A . n A 1 61 ILE 61 271 271 ILE ILE A . n A 1 62 LEU 62 272 272 LEU LEU A . n A 1 63 TYR 63 273 273 TYR TYR A . n A 1 64 LYS 64 274 274 LYS LYS A . n A 1 65 ARG 65 275 275 ARG ARG A . n A 1 66 GLY 66 276 276 GLY GLY A . n A 1 67 GLU 67 277 277 GLU GLU A . n A 1 68 THR 68 278 278 THR THR A . n A 1 69 PRO 69 279 279 PRO PRO A . n A 1 70 LEU 70 280 280 LEU LEU A . n A 1 71 PRO 71 281 281 PRO PRO A . n A 1 72 LEU 72 282 282 LEU LEU A . n A 1 73 VAL 73 283 283 VAL VAL A . n A 1 74 THR 74 284 284 THR THR A . n A 1 75 PHE 75 285 285 PHE PHE A . n A 1 76 LYS 76 286 286 LYS LYS A . n A 1 77 TYR 77 287 287 TYR TYR A . n A 1 78 THR 78 288 288 THR THR A . n A 1 79 ASP 79 289 289 ASP ASP A . n A 1 80 ALA 80 290 290 ALA ALA A . n A 1 81 GLN 81 291 291 GLN GLN A . n A 1 82 VAL 82 292 292 VAL VAL A . n A 1 83 GLN 83 293 293 GLN GLN A . n A 1 84 THR 84 294 294 THR THR A . n A 1 85 VAL 85 295 295 VAL VAL A . n A 1 86 ARG 86 296 296 ARG ARG A . n A 1 87 LYS 87 297 297 LYS LYS A . n A 1 88 ILE 88 298 298 ILE ILE A . n A 1 89 ALA 89 299 299 ALA ALA A . n A 1 90 GLU 90 300 300 GLU GLU A . n A 1 91 GLU 91 301 301 GLU GLU A . n A 1 92 GLU 92 302 302 GLU GLU A . n A 1 93 GLY 93 303 303 GLY GLY A . n A 1 94 VAL 94 304 304 VAL VAL A . n A 1 95 PRO 95 305 305 PRO PRO A . n A 1 96 ILE 96 306 306 ILE ILE A . n A 1 97 LEU 97 307 307 LEU LEU A . n A 1 98 GLN 98 308 308 GLN GLN A . n A 1 99 ARG 99 309 309 ARG ARG A . n A 1 100 ILE 100 310 310 ILE ILE A . n A 1 101 PRO 101 311 311 PRO PRO A . n A 1 102 LEU 102 312 312 LEU LEU A . n A 1 103 ALA 103 313 313 ALA ALA A . n A 1 104 ARG 104 314 314 ARG ARG A . n A 1 105 ALA 105 315 315 ALA ALA A . n A 1 106 LEU 106 316 316 LEU LEU A . n A 1 107 TYR 107 317 317 TYR TYR A . n A 1 108 TRP 108 318 318 TRP TRP A . n A 1 109 ASP 109 319 319 ASP ASP A . n A 1 110 ALA 110 320 320 ALA ALA A . n A 1 111 LEU 111 321 321 LEU LEU A . n A 1 112 VAL 112 322 322 VAL VAL A . n A 1 113 ASP 113 323 323 ASP ASP A . n A 1 114 HIS 114 324 324 HIS HIS A . n A 1 115 TYR 115 325 325 TYR TYR A . n A 1 116 ILE 116 326 326 ILE ILE A . n A 1 117 PRO 117 327 327 PRO PRO A . n A 1 118 ALA 118 328 328 ALA ALA A . n A 1 119 GLU 119 329 329 GLU GLU A . n A 1 120 GLN 120 330 330 GLN GLN A . n A 1 121 ILE 121 331 331 ILE ILE A . n A 1 122 GLU 122 332 332 GLU GLU A . n A 1 123 ALA 123 333 333 ALA ALA A . n A 1 124 THR 124 334 334 THR THR A . n A 1 125 ALA 125 335 335 ALA ALA A . n A 1 126 GLU 126 336 336 GLU GLU A . n A 1 127 VAL 127 337 337 VAL VAL A . n A 1 128 LEU 128 338 338 LEU LEU A . n A 1 129 ARG 129 339 339 ARG ARG A . n A 1 130 TRP 130 340 340 TRP TRP A . n A 1 131 LEU 131 341 341 LEU LEU A . n A 1 132 GLU 132 342 342 GLU GLU A . n A 1 133 ARG 133 343 343 ARG ARG A . n A 1 134 GLN 134 344 344 GLN GLN A . n A 1 135 ASN 135 345 ? ? ? A . n A 1 136 ILE 136 346 ? ? ? A . n A 1 137 GLU 137 347 ? ? ? A . n A 1 138 LYS 138 348 ? ? ? A . n A 1 139 GLN 139 349 ? ? ? A . n A 1 140 HIS 140 350 ? ? ? A . n A 1 141 SER 141 351 ? ? ? A . n A 1 142 GLU 142 352 ? ? ? A . n A 1 143 MET 143 353 ? ? ? A . n A 1 144 LEU 144 354 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . B 2 HOH 97 2097 2097 HOH HOH A . B 2 HOH 98 2098 2098 HOH HOH A . B 2 HOH 99 2099 2099 HOH HOH A . B 2 HOH 100 2100 2100 HOH HOH A . B 2 HOH 101 2101 2101 HOH HOH A . B 2 HOH 102 2102 2102 HOH HOH A . B 2 HOH 103 2103 2103 HOH HOH A . B 2 HOH 104 2104 2104 HOH HOH A . B 2 HOH 105 2105 2105 HOH HOH A . B 2 HOH 106 2106 2106 HOH HOH A . B 2 HOH 107 2107 2107 HOH HOH A . B 2 HOH 108 2108 2108 HOH HOH A . B 2 HOH 109 2109 2109 HOH HOH A . B 2 HOH 110 2110 2110 HOH HOH A . B 2 HOH 111 2111 2111 HOH HOH A . B 2 HOH 112 2112 2112 HOH HOH A . B 2 HOH 113 2113 2113 HOH HOH A . B 2 HOH 114 2114 2114 HOH HOH A . B 2 HOH 115 2115 2115 HOH HOH A . B 2 HOH 116 2116 2116 HOH HOH A . B 2 HOH 117 2117 2117 HOH HOH A . B 2 HOH 118 2118 2118 HOH HOH A . B 2 HOH 119 2119 2119 HOH HOH A . B 2 HOH 120 2120 2120 HOH HOH A . B 2 HOH 121 2121 2121 HOH HOH A . B 2 HOH 122 2122 2122 HOH HOH A . B 2 HOH 123 2123 2123 HOH HOH A . B 2 HOH 124 2124 2124 HOH HOH A . B 2 HOH 125 2125 2125 HOH HOH A . B 2 HOH 126 2126 2126 HOH HOH A . B 2 HOH 127 2127 2127 HOH HOH A . B 2 HOH 128 2128 2128 HOH HOH A . B 2 HOH 129 2129 2129 HOH HOH A . B 2 HOH 130 2130 2130 HOH HOH A . B 2 HOH 131 2131 2131 HOH HOH A . B 2 HOH 132 2132 2132 HOH HOH A . B 2 HOH 133 2133 2133 HOH HOH A . B 2 HOH 134 2134 2134 HOH HOH A . B 2 HOH 135 2135 2135 HOH HOH A . B 2 HOH 136 2136 2136 HOH HOH A . B 2 HOH 137 2137 2137 HOH HOH A . B 2 HOH 138 2138 2138 HOH HOH A . B 2 HOH 139 2139 2139 HOH HOH A . B 2 HOH 140 2140 2140 HOH HOH A . B 2 HOH 141 2141 2141 HOH HOH A . B 2 HOH 142 2142 2142 HOH HOH A . B 2 HOH 143 2143 2143 HOH HOH A . B 2 HOH 144 2144 2144 HOH HOH A . B 2 HOH 145 2145 2145 HOH HOH A . B 2 HOH 146 2146 2146 HOH HOH A . B 2 HOH 147 2147 2147 HOH HOH A . B 2 HOH 148 2148 2148 HOH HOH A . B 2 HOH 149 2149 2149 HOH HOH A . B 2 HOH 150 2150 2150 HOH HOH A . B 2 HOH 151 2151 2151 HOH HOH A . B 2 HOH 152 2152 2152 HOH HOH A . B 2 HOH 153 2153 2153 HOH HOH A . B 2 HOH 154 2154 2154 HOH HOH A . B 2 HOH 155 2155 2155 HOH HOH A . B 2 HOH 156 2156 2156 HOH HOH A . B 2 HOH 157 2157 2157 HOH HOH A . B 2 HOH 158 2158 2158 HOH HOH A . B 2 HOH 159 2159 2159 HOH HOH A . B 2 HOH 160 2160 2160 HOH HOH A . B 2 HOH 161 2161 2161 HOH HOH A . B 2 HOH 162 2162 2162 HOH HOH A . B 2 HOH 163 2163 2163 HOH HOH A . B 2 HOH 164 2164 2164 HOH HOH A . B 2 HOH 165 2165 2165 HOH HOH A . B 2 HOH 166 2166 2166 HOH HOH A . B 2 HOH 167 2167 2167 HOH HOH A . B 2 HOH 168 2168 2168 HOH HOH A . B 2 HOH 169 2169 2169 HOH HOH A . B 2 HOH 170 2170 2170 HOH HOH A . B 2 HOH 171 2171 2171 HOH HOH A . B 2 HOH 172 2172 2172 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1960 ? 1 MORE -11.4 ? 1 'SSA (A^2)' 14120 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -35.3650000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-03 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.2910 _pdbx_refine_tls.origin_y -12.4680 _pdbx_refine_tls.origin_z -5.2300 _pdbx_refine_tls.T[1][1] -0.0883 _pdbx_refine_tls.T[2][2] -0.1174 _pdbx_refine_tls.T[3][3] -0.0314 _pdbx_refine_tls.T[1][2] -0.0059 _pdbx_refine_tls.T[1][3] 0.0021 _pdbx_refine_tls.T[2][3] 0.0048 _pdbx_refine_tls.L[1][1] 1.0859 _pdbx_refine_tls.L[2][2] 1.3550 _pdbx_refine_tls.L[3][3] 1.0454 _pdbx_refine_tls.L[1][2] 0.0801 _pdbx_refine_tls.L[1][3] 0.2489 _pdbx_refine_tls.L[2][3] 0.1349 _pdbx_refine_tls.S[1][1] 0.0090 _pdbx_refine_tls.S[1][2] -0.1062 _pdbx_refine_tls.S[1][3] -0.0519 _pdbx_refine_tls.S[2][1] 0.1977 _pdbx_refine_tls.S[2][2] -0.0202 _pdbx_refine_tls.S[2][3] 0.0012 _pdbx_refine_tls.S[3][1] 0.0288 _pdbx_refine_tls.S[3][2] -0.1011 _pdbx_refine_tls.S[3][3] 0.0112 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 230 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 344 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.4.0057 ? 1 HKL-3000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_entry_details.entry_id 2JLJ _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, ASN 263 TO ALA ENGINEERED RESIDUE IN CHAIN A, PRO 264 TO ALA ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 240 ? ? O A HOH 2020 ? ? 1.72 2 1 O A HOH 2162 ? ? O A HOH 2166 ? ? 1.97 3 1 CD A GLN 240 ? ? O A HOH 2020 ? ? 2.09 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2082 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2134 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_544 _pdbx_validate_symm_contact.dist 2.01 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 265 ? ? 66.95 -4.87 2 1 ASP A 289 ? ? 52.45 -133.07 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2002 ? 7.26 . 2 1 O ? A HOH 2003 ? 6.38 . 3 1 O ? A HOH 2004 ? 7.49 . 4 1 O ? A HOH 2005 ? 8.39 . 5 1 O ? A HOH 2006 ? 6.54 . 6 1 O ? A HOH 2154 ? 6.73 . 7 1 O ? A HOH 2164 ? 6.54 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 275 ? CG ? A ARG 65 CG 2 1 Y 1 A ARG 275 ? CD ? A ARG 65 CD 3 1 Y 1 A ARG 275 ? NE ? A ARG 65 NE 4 1 Y 1 A ARG 275 ? CZ ? A ARG 65 CZ 5 1 Y 1 A ARG 275 ? NH1 ? A ARG 65 NH1 6 1 Y 1 A ARG 275 ? NH2 ? A ARG 65 NH2 7 1 Y 1 A GLU 277 ? CG ? A GLU 67 CG 8 1 Y 1 A GLU 277 ? CD ? A GLU 67 CD 9 1 Y 1 A GLU 277 ? OE1 ? A GLU 67 OE1 10 1 Y 1 A GLU 277 ? OE2 ? A GLU 67 OE2 11 1 Y 1 A GLU 300 ? CG ? A GLU 90 CG 12 1 Y 1 A GLU 300 ? CD ? A GLU 90 CD 13 1 Y 1 A GLU 300 ? OE1 ? A GLU 90 OE1 14 1 Y 1 A GLU 300 ? OE2 ? A GLU 90 OE2 15 1 Y 1 A GLU 342 ? CG ? A GLU 132 CG 16 1 Y 1 A GLU 342 ? CD ? A GLU 132 CD 17 1 Y 1 A GLU 342 ? OE1 ? A GLU 132 OE1 18 1 Y 1 A GLU 342 ? OE2 ? A GLU 132 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 211 ? A ILE 1 2 1 Y 1 A LYS 212 ? A LYS 2 3 1 Y 1 A GLU 213 ? A GLU 3 4 1 Y 1 A LEU 214 ? A LEU 4 5 1 Y 1 A LYS 215 ? A LYS 5 6 1 Y 1 A MET 216 ? A MET 6 7 1 Y 1 A SER 217 ? A SER 7 8 1 Y 1 A LYS 218 ? A LYS 8 9 1 Y 1 A ASP 219 ? A ASP 9 10 1 Y 1 A GLU 220 ? A GLU 10 11 1 Y 1 A ILE 221 ? A ILE 11 12 1 Y 1 A LYS 222 ? A LYS 12 13 1 Y 1 A ARG 223 ? A ARG 13 14 1 Y 1 A GLU 224 ? A GLU 14 15 1 Y 1 A TYR 225 ? A TYR 15 16 1 Y 1 A LYS 226 ? A LYS 16 17 1 Y 1 A GLU 227 ? A GLU 17 18 1 Y 1 A MET 228 ? A MET 18 19 1 Y 1 A GLU 229 ? A GLU 19 20 1 Y 1 A ASN 345 ? A ASN 135 21 1 Y 1 A ILE 346 ? A ILE 136 22 1 Y 1 A GLU 347 ? A GLU 137 23 1 Y 1 A LYS 348 ? A LYS 138 24 1 Y 1 A GLN 349 ? A GLN 139 25 1 Y 1 A HIS 350 ? A HIS 140 26 1 Y 1 A SER 351 ? A SER 141 27 1 Y 1 A GLU 352 ? A GLU 142 28 1 Y 1 A MET 353 ? A MET 143 29 1 Y 1 A LEU 354 ? A LEU 144 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #