HEADER LIGASE/SIGNALING PROTEIN 05-NOV-06 2JMF TITLE SOLUTION STRUCTURE OF THE SU(DX) WW4- NOTCH PY PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE SUPPRESSOR OF DELTEX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW4 DOMAIN, RESIDUES 515-557; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEUROGENIC LOCUS NOTCH PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: L/PPXY MOTIF, RESIDUES 2318-2332; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SU DX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 13 ORGANISM_COMMON: FRUIT FLY; SOURCE 14 ORGANISM_TAXID: 7227; SOURCE 15 GENE: N; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS WW DOMAIN, NOTCH, NMR SOLUTION, COMPLEX, LIGASE-SIGNALING PROTEIN KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.M.AVIS,R.T.BLANKLEY,M.D.JENNINGS,A.P.GOLOVANOV REVDAT 5 20-DEC-23 2JMF 1 REMARK REVDAT 4 09-MAR-22 2JMF 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JMF 1 VERSN REVDAT 2 16-OCT-07 2JMF 1 JRNL REVDAT 1 28-AUG-07 2JMF 0 JRNL AUTH M.D.JENNINGS,R.T.BLANKLEY,M.BARON,A.P.GOLOVANOV,J.M.AVIS JRNL TITL SPECIFICITY AND AUTOREGULATION OF NOTCH BINDING BY TANDEM WW JRNL TITL 2 DOMAINS IN SUPPRESSOR OF DELTEX JRNL REF J.BIOL.CHEM. V. 282 29032 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17656366 JRNL DOI 10.1074/JBC.M703453200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA 2.1, AMBER REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA), CASE, DARDEN, CHEATHAM, SIMMERLING, WANG, REMARK 3 DUKE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMISATION PERFORMED USING REMARK 3 AMBER REMARK 4 REMARK 4 2JMF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000100015. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.75 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-13C, U-15N] WW4 DOMAIN REMARK 210 FROM SU(DX), 2.0 MM NOTCH, 45 MM REMARK 210 SODIUM CHLORIDE, 9 MM DTT, 0.9 REMARK 210 MM EDTA, 45 MM ARGININE, 45 MM REMARK 210 GLUTAMATE, 90 % H2O, 10 % D2O; REMARK 210 3.0 MM [U-13C, U-15N] NOTCH, 0.8 REMARK 210 MM WW4 DOMAIN FROM SU(DX), 45 MM REMARK 210 SODIUM CHLORIDE, 9 MM DTT, 0.9 REMARK 210 MM EDTA, 45 MM ARGININE, 45 MM REMARK 210 GLUTAMATE, 90 % H2O, 10 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY; 3D 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA 2.1, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 505 REMARK 465 PRO A 506 REMARK 465 LEU A 507 REMARK 465 GLY A 508 REMARK 465 SER A 509 REMARK 465 PRO A 510 REMARK 465 GLU A 511 REMARK 465 PHE A 512 REMARK 465 HIS A 513 REMARK 465 MET A 514 REMARK 465 GLY B 2313 REMARK 465 PRO B 2314 REMARK 465 LEU B 2315 REMARK 465 GLY B 2316 REMARK 465 SER B 2317 REMARK 465 PRO B 2318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 ARG A 530 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 8 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 546 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 18 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 20 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 520 -179.87 -66.78 REMARK 500 1 ASP A 551 73.92 -118.27 REMARK 500 1 TYR B2328 -89.29 -87.70 REMARK 500 2 ASP A 551 73.96 -119.26 REMARK 500 2 SER B2327 84.30 -158.73 REMARK 500 2 TYR B2328 -88.94 -80.34 REMARK 500 3 ASN A 519 44.41 -141.24 REMARK 500 3 ASP A 551 77.20 -113.31 REMARK 500 3 ALA A 556 58.13 38.29 REMARK 500 3 TYR B2328 -89.59 -78.67 REMARK 500 4 ASN A 519 17.28 -144.98 REMARK 500 4 GLU A 550 -167.64 -126.47 REMARK 500 4 ASP A 551 75.85 -118.40 REMARK 500 4 ALA A 556 172.10 57.68 REMARK 500 4 TYR B2328 -88.52 -82.66 REMARK 500 5 GLU A 520 -166.94 -69.16 REMARK 500 5 ASP A 551 75.77 -118.86 REMARK 500 5 ALA A 556 56.42 38.25 REMARK 500 5 SER B2327 85.92 -152.14 REMARK 500 5 TYR B2328 -88.78 -81.71 REMARK 500 6 ASN A 519 36.48 -150.69 REMARK 500 6 ASP A 551 75.00 -115.27 REMARK 500 6 ALA A 556 59.98 -148.18 REMARK 500 6 LYS B2323 -169.91 -116.58 REMARK 500 6 SER B2327 87.57 -152.53 REMARK 500 6 TYR B2328 -87.16 -82.65 REMARK 500 7 ASP A 551 76.54 -115.34 REMARK 500 7 LYS B2323 -177.33 -65.19 REMARK 500 7 TYR B2328 -91.49 -89.75 REMARK 500 8 GLU A 520 -177.50 -64.49 REMARK 500 8 ASP A 551 76.97 -115.60 REMARK 500 8 PRO A 552 -164.04 -74.71 REMARK 500 8 ARG A 553 64.34 -115.68 REMARK 500 8 LYS B2323 -12.59 -142.89 REMARK 500 8 TYR B2328 -86.31 -88.93 REMARK 500 8 ILE B2332 27.01 -79.52 REMARK 500 9 ASP A 551 76.91 -118.99 REMARK 500 9 LYS B2323 -178.72 -64.21 REMARK 500 9 TYR B2328 -87.86 -81.97 REMARK 500 10 ASP A 551 73.07 -117.80 REMARK 500 10 TYR B2328 -87.86 -88.78 REMARK 500 11 GLU A 550 -168.80 -120.03 REMARK 500 11 ASP A 551 74.16 -117.64 REMARK 500 11 SER B2327 74.09 -159.25 REMARK 500 11 TYR B2328 -83.00 -74.71 REMARK 500 12 ASN A 519 47.97 -143.96 REMARK 500 12 ASP A 551 75.97 -117.79 REMARK 500 12 TYR B2328 -86.47 -83.24 REMARK 500 13 ASP A 551 75.53 -116.98 REMARK 500 13 TYR B2328 -87.74 -87.66 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TK7 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF WW DOMAINS (WW3-4) FROM SUPPRESSOR OF DELTEX DBREF 2JMF A 515 557 UNP Q9Y0H4 SUDX_DROME 515 557 DBREF 2JMF B 2318 2333 UNP P07207 NOTCH_DROME 2318 2333 SEQADV 2JMF GLY A 505 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF PRO A 506 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF LEU A 507 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF GLY A 508 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF SER A 509 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF PRO A 510 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF GLU A 511 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF PHE A 512 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF HIS A 513 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF MET A 514 UNP Q9Y0H4 EXPRESSION TAG SEQADV 2JMF GLY B 2313 UNP P07207 EXPRESSION TAG SEQADV 2JMF PRO B 2314 UNP P07207 EXPRESSION TAG SEQADV 2JMF LEU B 2315 UNP P07207 EXPRESSION TAG SEQADV 2JMF GLY B 2316 UNP P07207 EXPRESSION TAG SEQADV 2JMF SER B 2317 UNP P07207 EXPRESSION TAG SEQRES 1 A 53 GLY PRO LEU GLY SER PRO GLU PHE HIS MET VAL SER LEU SEQRES 2 A 53 ILE ASN GLU GLY PRO LEU PRO PRO GLY TRP GLU ILE ARG SEQRES 3 A 53 TYR THR ALA ALA GLY GLU ARG PHE PHE VAL ASP HIS ASN SEQRES 4 A 53 THR ARG ARG THR THR PHE GLU ASP PRO ARG PRO GLY ALA SEQRES 5 A 53 PRO SEQRES 1 B 21 GLY PRO LEU GLY SER PRO ASN THR GLY ALA LYS GLN PRO SEQRES 2 B 21 PRO SER TYR GLU ASP CYS ILE LYS SHEET 1 A 3 TRP A 527 TYR A 531 0 SHEET 2 A 3 ARG A 537 ASP A 541 -1 O VAL A 540 N GLU A 528 SHEET 3 A 3 THR A 547 THR A 548 -1 O THR A 548 N PHE A 539 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1