HEADER HYDROLASE 05-DEC-06 2JMU TITLE NMR STRUCTURE OF THE MOUSE THIAMINE TRIPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE-TRIPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THTPASE; COMPND 5 EC: 3.6.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: THTPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PVP13 KEYWDS THIAMINE TRIPHOSPHATASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 3 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SONG,J.L.MARKLEY,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 20-DEC-23 2JMU 1 REMARK REVDAT 6 14-JUN-23 2JMU 1 REMARK REVDAT 5 05-FEB-20 2JMU 1 REMARK SEQADV REVDAT 4 09-JUN-09 2JMU 1 REVDAT REVDAT 3 24-FEB-09 2JMU 1 VERSN REVDAT 2 06-JAN-09 2JMU 1 JRNL REVDAT 1 19-DEC-06 2JMU 0 JRNL AUTH J.SONG,L.BETTENDORFF,M.TONELLI,J.L.MARKLEY JRNL TITL STRUCTURAL BASIS FOR THE CATALYTIC MECHANISM OF MAMMALIAN JRNL TITL 2 25-KDA THIAMINE TRIPHOSPHATASE. JRNL REF J.BIOL.CHEM. V. 283 10939 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18276586 JRNL DOI 10.1074/JBC.M709675200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 4699 NOE RESTRAINTS (1639 INTRA, 921 SEQUENTIAL, 757 MEDIUM AND REMARK 3 1382 LONG RANGE), 176 HBOND RESTRAINTS, AND 289 PHI AND PSI REMARK 3 DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 2JMU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000100030. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 THTPASE_MOUSE, 10 MM MOPS, 100 REMARK 210 MM NACL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H,15N-HSQC; 1H,13C-HSQC; REMARK 210 HNCACB; CBCACONH; CCONH; REMARK 210 HCCHTOCSY; HBACONH; 13C-EDITED REMARK 210 1H,1H-NOESY; 15N-EDITED 1H,1H- REMARK 210 NOESY; 13C-EDITED AROMATIC 1H,1H- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 97.027.12.56, SPARKY 3.113, REMARK 210 GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,SIMULATED REMARK 210 ANNEALING,DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 11 OE2 GLU A 157 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 67 31.74 -71.62 REMARK 500 1 VAL A 72 105.35 -36.19 REMARK 500 1 GLU A 78 179.48 64.18 REMARK 500 1 SER A 98 -67.73 -92.23 REMARK 500 1 PRO A 103 -76.40 -68.62 REMARK 500 1 ALA A 104 -61.57 -175.02 REMARK 500 1 SER A 133 -165.97 -165.43 REMARK 500 1 ALA A 186 -165.82 -103.00 REMARK 500 1 GLN A 187 -2.71 -165.87 REMARK 500 1 GLU A 189 33.63 -73.52 REMARK 500 1 ALA A 190 106.82 65.60 REMARK 500 1 ALA A 218 92.12 -172.85 REMARK 500 1 THR A 219 -76.00 -94.98 REMARK 500 2 GLU A 58 -78.79 56.88 REMARK 500 2 PRO A 67 34.63 -74.27 REMARK 500 2 SER A 73 84.76 59.29 REMARK 500 2 HIS A 76 75.01 50.70 REMARK 500 2 GLU A 78 -153.05 48.77 REMARK 500 2 GLU A 100 -168.03 52.90 REMARK 500 2 PRO A 103 -88.83 -74.01 REMARK 500 2 ALA A 104 -49.87 174.23 REMARK 500 2 ALA A 135 -86.39 -107.73 REMARK 500 2 GLN A 187 -15.01 -152.04 REMARK 500 2 GLU A 189 30.19 -76.28 REMARK 500 2 ALA A 190 99.20 67.77 REMARK 500 2 ASP A 221 109.70 -165.96 REMARK 500 2 ALA A 223 72.22 52.66 REMARK 500 3 GLU A 58 19.16 50.86 REMARK 500 3 PRO A 67 50.76 -65.61 REMARK 500 3 VAL A 72 83.30 66.72 REMARK 500 3 PRO A 75 100.46 -58.54 REMARK 500 3 GLU A 78 -87.78 61.59 REMARK 500 3 PRO A 103 -72.43 -71.95 REMARK 500 3 ALA A 104 -64.33 176.70 REMARK 500 3 SER A 133 -24.83 -173.23 REMARK 500 3 GLN A 187 7.03 -159.23 REMARK 500 3 ALA A 190 101.59 -37.67 REMARK 500 3 ARG A 202 75.34 -154.79 REMARK 500 3 ALA A 213 33.54 -99.32 REMARK 500 3 SER A 215 -35.91 -164.84 REMARK 500 4 GLU A 58 -85.45 65.78 REMARK 500 4 THR A 70 85.85 -153.49 REMARK 500 4 SER A 73 102.43 63.74 REMARK 500 4 ASN A 77 28.69 -152.21 REMARK 500 4 GLU A 78 153.98 74.12 REMARK 500 4 SER A 98 -82.62 74.63 REMARK 500 4 PRO A 103 -82.60 -75.71 REMARK 500 4 ALA A 104 -47.70 171.63 REMARK 500 4 ALA A 135 -63.71 66.26 REMARK 500 4 ALA A 186 -155.52 -108.06 REMARK 500 REMARK 500 THIS ENTRY HAS 260 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 11 ARG A 10 0.09 SIDE CHAIN REMARK 500 11 ARG A 21 0.09 SIDE CHAIN REMARK 500 19 ARG A 55 0.08 SIDE CHAIN REMARK 500 20 ARG A 202 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.34517 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15063 RELATED DB: BMRB DBREF 2JMU A 2 224 UNP Q8JZL3 THTPA_MOUSE 1 223 SEQADV 2JMU SER A 1 UNP Q8JZL3 CLONING ARTIFACT SEQRES 1 A 224 SER ALA GLN GLY LEU ILE GLU VAL GLU ARG LYS PHE ALA SEQRES 2 A 224 PRO GLY PRO ASP THR GLU GLU ARG LEU GLN GLU LEU GLY SEQRES 3 A 224 ALA THR LEU GLU HIS ARG VAL THR PHE ARG ASP THR TYR SEQRES 4 A 224 TYR ASP THR SER GLU LEU SER LEU MET LEU SER ASP HIS SEQRES 5 A 224 TRP LEU ARG GLN ARG GLU GLY SER GLY TRP GLU LEU LYS SEQRES 6 A 224 CYS PRO GLY VAL THR GLY VAL SER GLY PRO HIS ASN GLU SEQRES 7 A 224 TYR VAL GLU VAL THR SER GLU ALA ALA ILE VAL ALA GLN SEQRES 8 A 224 LEU PHE GLU LEU LEU GLY SER GLY GLU GLN LYS PRO ALA SEQRES 9 A 224 GLY VAL ALA ALA VAL LEU GLY SER LEU LYS LEU GLN GLU SEQRES 10 A 224 VAL ALA SER PHE ILE THR THR ARG SER SER TRP LYS LEU SEQRES 11 A 224 ALA LEU SER GLY ALA HIS GLY GLN GLU PRO GLN LEU THR SEQRES 12 A 224 ILE ASP LEU ASP SER ALA ASP PHE GLY TYR ALA VAL GLY SEQRES 13 A 224 GLU VAL GLU ALA MET VAL HIS GLU LYS ALA GLU VAL PRO SEQRES 14 A 224 ALA ALA LEU GLU LYS ILE ILE THR VAL SER SER MET LEU SEQRES 15 A 224 GLY VAL PRO ALA GLN GLU GLU ALA PRO ALA LYS LEU MET SEQRES 16 A 224 VAL TYR LEU GLN ARG PHE ARG PRO LEU ASP TYR GLN ARG SEQRES 17 A 224 LEU LEU GLU ALA ALA SER SER GLY GLU ALA THR GLY ASP SEQRES 18 A 224 SER ALA SER HELIX 1 1 ASP A 17 GLY A 26 1 10 HELIX 2 2 LEU A 45 SER A 50 1 6 HELIX 3 3 SER A 84 GLY A 97 1 14 HELIX 4 4 GLY A 105 LYS A 114 1 10 HELIX 5 5 GLU A 164 ALA A 166 5 3 HELIX 6 6 GLU A 167 LEU A 182 1 16 HELIX 7 7 ALA A 192 ARG A 202 1 11 HELIX 8 8 ARG A 202 ALA A 213 1 12 SHEET 1 A 9 VAL A 80 VAL A 82 0 SHEET 2 A 9 GLY A 61 CYS A 66 -1 N CYS A 66 O VAL A 80 SHEET 3 A 9 TRP A 53 ARG A 57 -1 N ARG A 55 O GLU A 63 SHEET 4 A 9 THR A 28 ASP A 41 -1 N THR A 38 O GLN A 56 SHEET 5 A 9 GLN A 116 ALA A 131 -1 O ALA A 119 N TYR A 39 SHEET 6 A 9 GLN A 141 ALA A 149 -1 O ILE A 144 N TRP A 128 SHEET 7 A 9 TYR A 153 VAL A 162 -1 O VAL A 155 N ASP A 147 SHEET 8 A 9 ILE A 6 PRO A 14 -1 N ILE A 6 O VAL A 162 SHEET 9 A 9 GLY A 183 PRO A 185 -1 O VAL A 184 N ALA A 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1