HEADER UNKNOWN FUNCTION 01-FEB-07 2JNS TITLE SOLUTION STRUCTURE OF THE BROMODOMAIN-CONTAINING PROTEIN 4 ET DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DATABASE SEQUENCE RESIDUES 601-683; COMPND 5 SYNONYM: MITOTIC CHROMOSOME-ASSOCIATED PROTEIN, MCAP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BRD4, MCAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BROMODOMAIN CONTAINING PROTEIN 4, ET-DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.J.LIN,B.PADMANABHAN,S.YOKOYAMA,P.GUNTERT,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 20-DEC-23 2JNS 1 REMARK REVDAT 4 14-JUN-23 2JNS 1 REMARK REVDAT 3 05-FEB-20 2JNS 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JNS 1 VERSN REVDAT 1 05-FEB-08 2JNS 0 JRNL AUTH Y.J.LIN,B.PADMANABHAN,S.YOKOYAMA,P.GUNTERT JRNL TITL SOLUTION STRUCTURE OF THE BROMODOMAIN-CONTAINING PROTEIN 4 JRNL TITL 2 ET DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.2, CYANA 2.2.2, OPALP 1.4 REMARK 3 AUTHORS : P. GUNTERT ET AL. (CYANA), P. GUNTERT ET AL. REMARK 3 (CYANA), R. KORADI ET AL. (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JNS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000100064. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05 MM [U-100% 13C; U-100% 15N] REMARK 210 BRD4-ET DOMAIN, 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM [U-2H] TRIS, 1 REMARK 210 MM [U-2H] DTT, 0.02 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 15 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 15 114.40 -174.14 REMARK 500 2 SER A 5 100.02 -55.18 REMARK 500 2 PRO A 89 -164.75 -76.44 REMARK 500 3 GLU A 8 16.53 53.52 REMARK 500 3 ARG A 84 -9.67 61.42 REMARK 500 3 LYS A 88 161.98 57.00 REMARK 500 4 ASP A 13 28.41 48.90 REMARK 500 4 ARG A 84 -16.66 65.09 REMARK 500 4 LYS A 85 86.27 -59.80 REMARK 500 5 SER A 3 60.10 22.73 REMARK 500 5 SER A 6 138.95 -171.60 REMARK 500 5 LYS A 85 72.41 -110.13 REMARK 500 6 ASP A 13 28.74 -74.41 REMARK 500 6 LYS A 88 61.75 24.72 REMARK 500 7 GLU A 8 -41.66 -131.94 REMARK 500 7 ASP A 13 6.27 -67.17 REMARK 500 7 ASN A 54 -21.03 73.68 REMARK 500 7 LYS A 85 107.79 -45.10 REMARK 500 8 LYS A 88 80.13 -160.01 REMARK 500 10 SER A 2 61.56 -156.13 REMARK 500 10 SER A 5 -137.63 -156.73 REMARK 500 10 LYS A 88 74.95 32.40 REMARK 500 11 SER A 6 -85.68 -123.73 REMARK 500 11 ASP A 13 16.63 -65.91 REMARK 500 11 CYS A 82 -60.36 -93.56 REMARK 500 11 LYS A 85 -141.53 -92.49 REMARK 500 12 SER A 6 -88.71 -134.98 REMARK 500 12 LYS A 85 79.56 -63.57 REMARK 500 13 SER A 9 42.01 -81.67 REMARK 500 13 ASN A 54 -14.13 61.64 REMARK 500 13 LYS A 85 40.74 -76.52 REMARK 500 14 LYS A 85 11.35 54.99 REMARK 500 14 ARG A 87 107.57 -59.57 REMARK 500 14 LYS A 88 97.46 -165.12 REMARK 500 14 PRO A 89 -175.32 -69.72 REMARK 500 15 SER A 3 -17.92 61.78 REMARK 500 15 ASN A 54 -20.28 67.64 REMARK 500 16 SER A 6 -5.86 70.62 REMARK 500 17 SER A 5 45.63 38.64 REMARK 500 17 ASP A 13 66.35 30.29 REMARK 500 17 ASN A 54 -2.64 78.57 REMARK 500 18 SER A 3 19.13 54.15 REMARK 500 18 SER A 9 3.45 57.51 REMARK 500 18 LYS A 88 83.57 48.61 REMARK 500 19 SER A 3 154.22 177.42 REMARK 500 19 SER A 6 -156.04 -111.96 REMARK 500 19 GLU A 11 -9.83 -59.25 REMARK 500 19 LYS A 14 -169.83 -124.98 REMARK 500 19 LYS A 85 -11.74 58.16 REMARK 500 20 ASP A 13 64.90 -114.96 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 84 0.09 SIDE CHAIN REMARK 500 4 ARG A 73 0.08 SIDE CHAIN REMARK 500 6 ARG A 40 0.12 SIDE CHAIN REMARK 500 14 ARG A 73 0.08 SIDE CHAIN REMARK 500 15 ARG A 84 0.09 SIDE CHAIN REMARK 500 18 ARG A 24 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000372.2 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15125 RELATED DB: BMRB DBREF 2JNS A 8 90 UNP Q9ESU6 BRD4_MOUSE 601 683 SEQADV 2JNS GLY A 1 UNP Q9ESU6 EXPRESSION TAG SEQADV 2JNS SER A 2 UNP Q9ESU6 EXPRESSION TAG SEQADV 2JNS SER A 3 UNP Q9ESU6 EXPRESSION TAG SEQADV 2JNS GLY A 4 UNP Q9ESU6 EXPRESSION TAG SEQADV 2JNS SER A 5 UNP Q9ESU6 EXPRESSION TAG SEQADV 2JNS SER A 6 UNP Q9ESU6 EXPRESSION TAG SEQADV 2JNS GLY A 7 UNP Q9ESU6 EXPRESSION TAG SEQRES 1 A 90 GLY SER SER GLY SER SER GLY GLU SER GLU GLU GLU ASP SEQRES 2 A 90 LYS CYS LYS PRO MET SER TYR GLU GLU LYS ARG GLN LEU SEQRES 3 A 90 SER LEU ASP ILE ASN LYS LEU PRO GLY GLU LYS LEU GLY SEQRES 4 A 90 ARG VAL VAL HIS ILE ILE GLN SER ARG GLU PRO SER LEU SEQRES 5 A 90 LYS ASN SER ASN PRO ASP GLU ILE GLU ILE ASP PHE GLU SEQRES 6 A 90 THR LEU LYS PRO SER THR LEU ARG GLU LEU GLU ARG TYR SEQRES 7 A 90 VAL THR SER CYS LEU ARG LYS LYS ARG LYS PRO GLN HELIX 1 1 SER A 19 ASN A 31 1 13 HELIX 2 2 PRO A 34 GLY A 39 1 6 HELIX 3 3 ARG A 40 SER A 47 1 8 HELIX 4 4 ARG A 48 LYS A 53 5 6 HELIX 5 5 LYS A 68 SER A 81 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1