HEADER LIGASE 01-MAR-07 2JO9 TITLE MOUSE ITCH 3RD WW DOMAIN COMPLEX WITH THE EPSTEIN-BARR VIRUS LATENT TITLE 2 MEMBRANE PROTEIN 2A DERIVED PEPTIDE EEPPPPYED COMPND MOL_ID: 1; COMPND 2 MOLECULE: ITCHY E3 UBIQUITIN PROTEIN LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW 3 DOMAIN, SEQUENCE DATABASE RESIDUES 399-432; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LATENT MEMBRANE PROTEIN 2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SEQUENCE DATABASE RESIDUES 54-62; COMPND 11 SYNONYM: TERMINAL PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ITCH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM30; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHEIZED. THE SEQUENCE SOURCE 14 OF THE PEPTIDE IS NATURALLY FOUND IN EPSTEIN-BARR VIRUS. KEYWDS ITCH, WW, COMPLEX, EPSTEIN-BARR VIRUS, LMP2A, LIGASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.J.MACIAS,A.Z.SHAW,P.MARTIN-MALPARTIDA,B.MORALES,L.RUIZ,X.RAMIREZ- AUTHOR 2 ESPAIN,F.YRAOLA,M.ROYO REVDAT 5 20-DEC-23 2JO9 1 REMARK REVDAT 4 09-MAR-22 2JO9 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JO9 1 VERSN REVDAT 2 08-MAY-07 2JO9 1 JRNL REVDAT 1 17-APR-07 2JO9 0 JRNL AUTH B.MORALES,X.RAMIREZ-ESPAIN,A.Z.SHAW,P.MARTIN-MALPARTIDA, JRNL AUTH 2 F.YRAOLA,E.SANCHEZ-TILLO,C.FARRERA,A.CELADA,M.ROYO, JRNL AUTH 3 M.J.MACIAS JRNL TITL NMR STRUCTURAL STUDIES OF THE ITCHWW3 DOMAIN REVEAL THAT JRNL TITL 2 PHOSPHORYLATION AT T30 INHIBITS THE INTERACTION WITH JRNL TITL 3 PPXY-CONTAINING LIGANDS JRNL REF STRUCTURE V. 15 473 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17437719 JRNL DOI 10.1016/J.STR.2007.03.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, ARIA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA 1.2 SOFTWARE USED, ALL NOES REMARK 3 MANUALLY ASSIGNED REMARK 4 REMARK 4 2JO9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100081. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 0.4 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 15N] WW3, 3.0 MM REMARK 210 LIGAND, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM NACL, 0.02% V/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1.0 MM REMARK 210 [U-100% 13C; U-100% 15N] WW3, REMARK 210 3.0 MM LIGAND, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM NACL, 0.02% V/ REMARK 210 V SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM WW3, 3.0 MM LIGAND, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM NACL, REMARK 210 0.02% V/V SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D CBCANH; 2D 1H REMARK 210 -15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 36 REMARK 465 SER A 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 PRO A 35 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 11 HE2 HIS A 25 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 16 -51.47 -29.31 REMARK 500 1 ASN A 17 -80.92 -90.58 REMARK 500 1 ARG A 28 65.01 60.25 REMARK 500 1 GLU B 108 110.44 -163.43 REMARK 500 2 SER A 16 -52.83 -29.13 REMARK 500 2 ASN A 17 -80.41 -90.79 REMARK 500 3 SER A 16 -57.29 -29.08 REMARK 500 3 ASN A 17 -80.48 -90.78 REMARK 500 3 ARG A 28 70.69 58.10 REMARK 500 3 GLU B 108 -80.44 -70.45 REMARK 500 4 SER A 16 -55.69 -29.34 REMARK 500 4 ASN A 17 -80.50 -90.79 REMARK 500 5 SER A 16 -51.42 -29.50 REMARK 500 5 ASN A 17 -81.07 -90.58 REMARK 500 5 ARG A 28 32.63 73.39 REMARK 500 5 GLU B 108 -31.34 -155.04 REMARK 500 6 SER A 16 -53.59 -29.66 REMARK 500 6 ASN A 17 -80.65 -90.64 REMARK 500 6 TYR B 107 -83.88 -78.06 REMARK 500 6 GLU B 108 81.10 48.84 REMARK 500 7 SER A 16 -58.77 -29.17 REMARK 500 7 ASN A 17 -80.43 -90.74 REMARK 500 8 SER A 16 -59.88 -28.88 REMARK 500 8 ASN A 17 -80.26 -90.51 REMARK 500 9 SER A 16 -53.83 -29.23 REMARK 500 9 ASN A 17 -80.82 -90.59 REMARK 500 9 ARG A 28 31.46 72.13 REMARK 500 10 SER A 16 -57.02 -29.00 REMARK 500 10 ASN A 17 -81.14 -90.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 8 GLY A 9 1 134.20 REMARK 500 GLY A 18 ARG A 19 1 -147.77 REMARK 500 PRO A 8 GLY A 9 2 134.78 REMARK 500 GLY A 18 ARG A 19 2 -149.85 REMARK 500 PRO A 8 GLY A 9 3 133.35 REMARK 500 ASP A 15 SER A 16 3 -144.84 REMARK 500 PRO A 8 GLY A 9 4 137.63 REMARK 500 ASP A 15 SER A 16 4 -147.86 REMARK 500 PRO A 8 GLY A 9 5 137.51 REMARK 500 GLY A 18 ARG A 19 5 -146.77 REMARK 500 PRO A 8 GLY A 9 6 136.90 REMARK 500 ASP A 15 SER A 16 6 -148.48 REMARK 500 PRO A 8 GLY A 9 7 135.37 REMARK 500 ASP A 15 SER A 16 7 -139.72 REMARK 500 PRO A 8 GLY A 9 8 131.94 REMARK 500 ASP A 15 SER A 16 8 -141.61 REMARK 500 PRO A 8 GLY A 9 9 136.66 REMARK 500 ASP A 15 SER A 16 9 -145.04 REMARK 500 PRO A 8 GLY A 9 10 138.12 REMARK 500 ASP A 15 SER A 16 10 -146.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JOC RELATED DB: PDB DBREF 2JO9 A 4 37 UNP Q8C863 ITCH_MOUSE 399 432 DBREF 2JO9 B 101 109 UNP P13285 LMP2_EBV 54 62 SEQADV 2JO9 GLY A 1 UNP Q8C863 CLONING ARTIFACT SEQADV 2JO9 ALA A 2 UNP Q8C863 CLONING ARTIFACT SEQADV 2JO9 MET A 3 UNP Q8C863 CLONING ARTIFACT SEQRES 1 A 37 GLY ALA MET GLY PRO LEU PRO PRO GLY TRP GLU LYS ARG SEQRES 2 A 37 THR ASP SER ASN GLY ARG VAL TYR PHE VAL ASN HIS ASN SEQRES 3 A 37 THR ARG ILE THR GLN TRP GLU ASP PRO ARG SER SEQRES 1 B 9 GLU GLU PRO PRO PRO PRO TYR GLU ASP SHEET 1 A 3 TRP A 10 THR A 14 0 SHEET 2 A 3 VAL A 20 ASN A 24 -1 O TYR A 21 N ARG A 13 SHEET 3 A 3 ILE A 29 GLN A 31 -1 O GLN A 31 N PHE A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1