data_2JOF # _entry.id 2JOF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JOF pdb_00002jof 10.2210/pdb2jof/pdb RCSB RCSB100087 ? ? WWPDB D_1000100087 ? ? BMRB 15169 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-05 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' Other 7 3 'Structure model' 'Source and taxonomy' 8 4 'Structure model' 'Database references' 9 4 'Structure model' Other 10 5 'Structure model' 'Data collection' 11 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_entity_src_syn 4 3 'Structure model' pdbx_nmr_sample_details 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' pdbx_struct_assembly 7 3 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_database_status 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_sample_details.contents' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 7 5 'Structure model' '_pdbx_database_status.deposit_site' # _pdbx_database_status.deposit_site RCSB _pdbx_database_status.entry_id 2JOF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-03-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 1l2y PDB 'less stable, but identical motif.' unspecified 1jrj PDB 'molecule with an analagous C-terminus.' unspecified 15169 BMRB . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barua, B.' 1 'Andersen, N.H.' 2 # _citation.id primary _citation.title 'The Trp-cage: optimizing the stability of a globular miniprotein' _citation.journal_abbrev 'Protein Eng.Des.Sel.' _citation.journal_volume 21 _citation.page_first 171 _citation.page_last 185 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1741-0126 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18203802 _citation.pdbx_database_id_DOI 10.1093/protein/gzm082 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barua, B.' 1 ? primary 'Lin, J.C.' 2 ? primary 'Williams, V.D.' 3 ? primary 'Kummler, P.' 4 ? primary 'Neidigh, J.W.' 5 ? primary 'Andersen, N.H.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description TRP-CAGE _entity.formula_weight 2088.238 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAYAQWLKDGGPSSGRPPPS _entity_poly.pdbx_seq_one_letter_code_can DAYAQWLKDGGPSSGRPPPS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 TYR n 1 4 ALA n 1 5 GLN n 1 6 TRP n 1 7 LEU n 1 8 LYS n 1 9 ASP n 1 10 GLY n 1 11 GLY n 1 12 PRO n 1 13 SER n 1 14 SER n 1 15 GLY n 1 16 ARG n 1 17 PRO n 1 18 PRO n 1 19 PRO n 1 20 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JOF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2JOF _struct.title 'The Trp-cage: Optimizing the Stability of a Globular Miniprotein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JOF _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'de novo protein, miniprotein, two-state folding, Trp-cage' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2JOF _struct_ref.pdbx_db_accession 2JOF _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JOF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2JOF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 1 ? GLY A 10 ? ASP A 1 GLY A 10 1 ? 10 HELX_P HELX_P2 2 GLY A 11 ? GLY A 15 ? GLY A 11 GLY A 15 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 O A GLY 10 ? ? HG A SER 13 ? ? 1.57 2 7 O A GLY 10 ? ? HG A SER 13 ? ? 1.55 3 9 O A ASP 9 ? ? HG A SER 14 ? ? 1.56 4 11 O A ASP 9 ? ? HG A SER 14 ? ? 1.52 5 12 O A ASP 9 ? ? HG A SER 14 ? ? 1.58 6 14 O A ASP 9 ? ? HG A SER 14 ? ? 1.56 7 15 O A PRO 19 ? ? HG A SER 20 ? ? 1.56 8 16 O A ASP 9 ? ? HG A SER 14 ? ? 1.46 9 19 O A ASP 9 ? ? HG A SER 14 ? ? 1.60 10 20 O A GLY 10 ? ? HG A SER 13 ? ? 1.56 11 21 O A GLY 10 ? ? HG A SER 13 ? ? 1.56 12 23 O A GLY 10 ? ? HG A SER 13 ? ? 1.56 13 25 O A ASP 9 ? ? HG A SER 14 ? ? 1.46 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 4 ALA A 2 ? ? -150.64 -36.74 2 5 ALA A 2 ? ? 59.00 2.01 3 9 ALA A 2 ? ? -144.67 -33.81 4 9 ASP A 9 ? ? -85.58 32.05 5 10 ASP A 9 ? ? -76.01 28.66 6 13 ALA A 2 ? ? 51.40 -6.05 7 28 ALA A 2 ? ? 57.12 5.29 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 16 ? ? 0.120 'SIDE CHAIN' 2 4 ARG A 16 ? ? 0.077 'SIDE CHAIN' 3 7 ARG A 16 ? ? 0.089 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 28 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JOF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation -0.2 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.0351 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.0038 _pdbx_nmr_ensemble_rms.entry_id 2JOF _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JOF _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '1.0 mM TRP-CAGE, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample.component TRP-CAGE _pdbx_nmr_exptl_sample.concentration 1.0 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.020 _pdbx_nmr_exptl_sample_conditions.pH 7.00 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 280 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2JOF _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 186 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 85 _pdbx_nmr_constraints.NOE_long_range_total_count 28 _pdbx_nmr_constraints.NOE_medium_range_total_count 21 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 52 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.details 'Steepest descent minimization' _pdbx_nmr_refine.entry_id 2JOF _pdbx_nmr_refine.method 'molecular dynamics, simulated annealing' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll' refinement Amber 6 1 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.1 2 Goddard 'chemical shift assignment' Sparky 3.11 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRDraw 2.3 4 'Bruker Biospin' collection XwinNMR 2.6 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLY N N N N 77 GLY CA C N N 78 GLY C C N N 79 GLY O O N N 80 GLY OXT O N N 81 GLY H H N N 82 GLY H2 H N N 83 GLY HA2 H N N 84 GLY HA3 H N N 85 GLY HXT H N N 86 LEU N N N N 87 LEU CA C N S 88 LEU C C N N 89 LEU O O N N 90 LEU CB C N N 91 LEU CG C N N 92 LEU CD1 C N N 93 LEU CD2 C N N 94 LEU OXT O N N 95 LEU H H N N 96 LEU H2 H N N 97 LEU HA H N N 98 LEU HB2 H N N 99 LEU HB3 H N N 100 LEU HG H N N 101 LEU HD11 H N N 102 LEU HD12 H N N 103 LEU HD13 H N N 104 LEU HD21 H N N 105 LEU HD22 H N N 106 LEU HD23 H N N 107 LEU HXT H N N 108 LYS N N N N 109 LYS CA C N S 110 LYS C C N N 111 LYS O O N N 112 LYS CB C N N 113 LYS CG C N N 114 LYS CD C N N 115 LYS CE C N N 116 LYS NZ N N N 117 LYS OXT O N N 118 LYS H H N N 119 LYS H2 H N N 120 LYS HA H N N 121 LYS HB2 H N N 122 LYS HB3 H N N 123 LYS HG2 H N N 124 LYS HG3 H N N 125 LYS HD2 H N N 126 LYS HD3 H N N 127 LYS HE2 H N N 128 LYS HE3 H N N 129 LYS HZ1 H N N 130 LYS HZ2 H N N 131 LYS HZ3 H N N 132 LYS HXT H N N 133 PRO N N N N 134 PRO CA C N S 135 PRO C C N N 136 PRO O O N N 137 PRO CB C N N 138 PRO CG C N N 139 PRO CD C N N 140 PRO OXT O N N 141 PRO H H N N 142 PRO HA H N N 143 PRO HB2 H N N 144 PRO HB3 H N N 145 PRO HG2 H N N 146 PRO HG3 H N N 147 PRO HD2 H N N 148 PRO HD3 H N N 149 PRO HXT H N N 150 SER N N N N 151 SER CA C N S 152 SER C C N N 153 SER O O N N 154 SER CB C N N 155 SER OG O N N 156 SER OXT O N N 157 SER H H N N 158 SER H2 H N N 159 SER HA H N N 160 SER HB2 H N N 161 SER HB3 H N N 162 SER HG H N N 163 SER HXT H N N 164 TRP N N N N 165 TRP CA C N S 166 TRP C C N N 167 TRP O O N N 168 TRP CB C N N 169 TRP CG C Y N 170 TRP CD1 C Y N 171 TRP CD2 C Y N 172 TRP NE1 N Y N 173 TRP CE2 C Y N 174 TRP CE3 C Y N 175 TRP CZ2 C Y N 176 TRP CZ3 C Y N 177 TRP CH2 C Y N 178 TRP OXT O N N 179 TRP H H N N 180 TRP H2 H N N 181 TRP HA H N N 182 TRP HB2 H N N 183 TRP HB3 H N N 184 TRP HD1 H N N 185 TRP HE1 H N N 186 TRP HE3 H N N 187 TRP HZ2 H N N 188 TRP HZ3 H N N 189 TRP HH2 H N N 190 TRP HXT H N N 191 TYR N N N N 192 TYR CA C N S 193 TYR C C N N 194 TYR O O N N 195 TYR CB C N N 196 TYR CG C Y N 197 TYR CD1 C Y N 198 TYR CD2 C Y N 199 TYR CE1 C Y N 200 TYR CE2 C Y N 201 TYR CZ C Y N 202 TYR OH O N N 203 TYR OXT O N N 204 TYR H H N N 205 TYR H2 H N N 206 TYR HA H N N 207 TYR HB2 H N N 208 TYR HB3 H N N 209 TYR HD1 H N N 210 TYR HD2 H N N 211 TYR HE1 H N N 212 TYR HE2 H N N 213 TYR HH H N N 214 TYR HXT H N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLY N CA sing N N 73 GLY N H sing N N 74 GLY N H2 sing N N 75 GLY CA C sing N N 76 GLY CA HA2 sing N N 77 GLY CA HA3 sing N N 78 GLY C O doub N N 79 GLY C OXT sing N N 80 GLY OXT HXT sing N N 81 LEU N CA sing N N 82 LEU N H sing N N 83 LEU N H2 sing N N 84 LEU CA C sing N N 85 LEU CA CB sing N N 86 LEU CA HA sing N N 87 LEU C O doub N N 88 LEU C OXT sing N N 89 LEU CB CG sing N N 90 LEU CB HB2 sing N N 91 LEU CB HB3 sing N N 92 LEU CG CD1 sing N N 93 LEU CG CD2 sing N N 94 LEU CG HG sing N N 95 LEU CD1 HD11 sing N N 96 LEU CD1 HD12 sing N N 97 LEU CD1 HD13 sing N N 98 LEU CD2 HD21 sing N N 99 LEU CD2 HD22 sing N N 100 LEU CD2 HD23 sing N N 101 LEU OXT HXT sing N N 102 LYS N CA sing N N 103 LYS N H sing N N 104 LYS N H2 sing N N 105 LYS CA C sing N N 106 LYS CA CB sing N N 107 LYS CA HA sing N N 108 LYS C O doub N N 109 LYS C OXT sing N N 110 LYS CB CG sing N N 111 LYS CB HB2 sing N N 112 LYS CB HB3 sing N N 113 LYS CG CD sing N N 114 LYS CG HG2 sing N N 115 LYS CG HG3 sing N N 116 LYS CD CE sing N N 117 LYS CD HD2 sing N N 118 LYS CD HD3 sing N N 119 LYS CE NZ sing N N 120 LYS CE HE2 sing N N 121 LYS CE HE3 sing N N 122 LYS NZ HZ1 sing N N 123 LYS NZ HZ2 sing N N 124 LYS NZ HZ3 sing N N 125 LYS OXT HXT sing N N 126 PRO N CA sing N N 127 PRO N CD sing N N 128 PRO N H sing N N 129 PRO CA C sing N N 130 PRO CA CB sing N N 131 PRO CA HA sing N N 132 PRO C O doub N N 133 PRO C OXT sing N N 134 PRO CB CG sing N N 135 PRO CB HB2 sing N N 136 PRO CB HB3 sing N N 137 PRO CG CD sing N N 138 PRO CG HG2 sing N N 139 PRO CG HG3 sing N N 140 PRO CD HD2 sing N N 141 PRO CD HD3 sing N N 142 PRO OXT HXT sing N N 143 SER N CA sing N N 144 SER N H sing N N 145 SER N H2 sing N N 146 SER CA C sing N N 147 SER CA CB sing N N 148 SER CA HA sing N N 149 SER C O doub N N 150 SER C OXT sing N N 151 SER CB OG sing N N 152 SER CB HB2 sing N N 153 SER CB HB3 sing N N 154 SER OG HG sing N N 155 SER OXT HXT sing N N 156 TRP N CA sing N N 157 TRP N H sing N N 158 TRP N H2 sing N N 159 TRP CA C sing N N 160 TRP CA CB sing N N 161 TRP CA HA sing N N 162 TRP C O doub N N 163 TRP C OXT sing N N 164 TRP CB CG sing N N 165 TRP CB HB2 sing N N 166 TRP CB HB3 sing N N 167 TRP CG CD1 doub Y N 168 TRP CG CD2 sing Y N 169 TRP CD1 NE1 sing Y N 170 TRP CD1 HD1 sing N N 171 TRP CD2 CE2 doub Y N 172 TRP CD2 CE3 sing Y N 173 TRP NE1 CE2 sing Y N 174 TRP NE1 HE1 sing N N 175 TRP CE2 CZ2 sing Y N 176 TRP CE3 CZ3 doub Y N 177 TRP CE3 HE3 sing N N 178 TRP CZ2 CH2 doub Y N 179 TRP CZ2 HZ2 sing N N 180 TRP CZ3 CH2 sing Y N 181 TRP CZ3 HZ3 sing N N 182 TRP CH2 HH2 sing N N 183 TRP OXT HXT sing N N 184 TYR N CA sing N N 185 TYR N H sing N N 186 TYR N H2 sing N N 187 TYR CA C sing N N 188 TYR CA CB sing N N 189 TYR CA HA sing N N 190 TYR C O doub N N 191 TYR C OXT sing N N 192 TYR CB CG sing N N 193 TYR CB HB2 sing N N 194 TYR CB HB3 sing N N 195 TYR CG CD1 doub Y N 196 TYR CG CD2 sing Y N 197 TYR CD1 CE1 sing Y N 198 TYR CD1 HD1 sing N N 199 TYR CD2 CE2 doub Y N 200 TYR CD2 HD2 sing N N 201 TYR CE1 CZ doub Y N 202 TYR CE1 HE1 sing N N 203 TYR CE2 CZ sing Y N 204 TYR CE2 HE2 sing N N 205 TYR CZ OH sing N N 206 TYR OH HH sing N N 207 TYR OXT HXT sing N N 208 # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _atom_sites.entry_id 2JOF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_