HEADER CELL INVASION, SIGNALING PROTEIN 14-MAR-07 2JOK TITLE NMR STRUCTURE OF THE CATALYTIC DOMAIN OF GUANINE NUCLEOTIDE EXCHANGE TITLE 2 FACTOR BOPE FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE G-NUCLEOTIDE EXCHANGE FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 78-261; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: BOPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, BURKHOLDERIA PSEUDOMALLEI, TYPE KEYWDS 2 III SECRETION, SOPE, SOPE2, CELL INVASION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.WU,A.UPADHYAY,C.WILLIAMS,E.E.GALYOV,J.M.H.VAN DEN ELSEN,S.BAGBY REVDAT 5 20-DEC-23 2JOK 1 REMARK REVDAT 4 09-MAR-22 2JOK 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JOK 1 VERSN REVDAT 2 29-APR-08 2JOK 1 JRNL REVDAT 1 18-SEP-07 2JOK 0 JRNL AUTH A.UPADHYAY,H.L.WU,C.WILLIAMS,T.FIELD,E.E.GALYOV, JRNL AUTH 2 J.M.VAN DEN ELSEN,S.BAGBY JRNL TITL THE GUANINE-NUCLEOTIDE-EXCHANGE FACTOR BOPE FROM JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI ADOPTS A COMPACT VERSION OF THE JRNL TITL 3 SALMONELLA SOPE/SOPE2 FOLD AND UNDERGOES A CLOSED-TO-OPEN JRNL TITL 4 CONFORMATIONAL CHANGE UPON INTERACTION WITH CDC42 JRNL REF BIOCHEM.J. V. 411 485 2008 JRNL REFN ISSN 0264-6021 JRNL PMID 18052936 JRNL DOI 10.1042/BJ20071546 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, X-PLOR NIH REMARK 3 AUTHORS : GODDARD (SPARKY), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100092. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM PROTEIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 1 MM BENZAMIDINE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY; IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, X-PLOR NIH, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 201 H GLN A 203 1.38 REMARK 500 O LEU A 213 H ASN A 216 1.50 REMARK 500 O GLN A 209 H ASP A 212 1.56 REMARK 500 O GLY A 79 HH12 ARG A 196 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 84 -84.31 -64.26 REMARK 500 1 GLU A 109 -66.78 -176.26 REMARK 500 1 ASP A 133 105.03 -40.36 REMARK 500 1 THR A 136 55.33 -154.37 REMARK 500 1 ARG A 137 -65.88 -90.82 REMARK 500 1 ALA A 138 -152.59 -69.23 REMARK 500 1 VAL A 141 16.22 85.71 REMARK 500 1 GLN A 164 -85.55 57.36 REMARK 500 1 ALA A 172 120.23 61.14 REMARK 500 1 THR A 174 -52.57 -172.59 REMARK 500 1 LEU A 177 -65.30 -98.38 REMARK 500 1 MET A 189 -92.26 -73.75 REMARK 500 1 ARG A 196 148.03 -38.51 REMARK 500 1 PRO A 197 7.31 -69.57 REMARK 500 1 LEU A 202 41.45 -61.03 REMARK 500 1 GLN A 209 -76.54 -77.96 REMARK 500 1 LEU A 218 68.34 -165.14 REMARK 500 1 ALA A 220 -87.03 -95.80 REMARK 500 1 GLU A 221 -79.68 -77.80 REMARK 500 1 ARG A 222 -30.80 -35.62 REMARK 500 1 ALA A 254 -57.68 -160.70 REMARK 500 1 ALA A 258 33.96 -176.74 REMARK 500 2 ASP A 80 44.66 -162.65 REMARK 500 2 ALA A 81 -29.16 -32.23 REMARK 500 2 ALA A 84 -74.59 -66.31 REMARK 500 2 ILE A 85 -35.33 -39.75 REMARK 500 2 ALA A 92 -72.01 -53.86 REMARK 500 2 THR A 101 -58.25 -29.68 REMARK 500 2 GLU A 109 -54.90 -135.34 REMARK 500 2 ARG A 137 49.55 -100.34 REMARK 500 2 ALA A 138 -95.62 -167.96 REMARK 500 2 SER A 170 78.20 42.33 REMARK 500 2 LEU A 177 -68.85 -97.77 REMARK 500 2 ALA A 191 -148.05 -90.67 REMARK 500 2 ALA A 194 -34.42 -33.82 REMARK 500 2 ARG A 196 140.91 -35.14 REMARK 500 2 LEU A 202 35.66 -59.46 REMARK 500 2 TYR A 205 -18.21 -48.63 REMARK 500 2 ALA A 206 -65.18 -90.05 REMARK 500 2 LEU A 213 -77.62 -58.43 REMARK 500 2 GLU A 221 -83.27 -59.09 REMARK 500 2 GLU A 251 -75.08 -50.91 REMARK 500 2 LYS A 252 -168.61 54.84 REMARK 500 2 ALA A 254 60.51 -156.71 REMARK 500 2 ALA A 257 29.29 -73.40 REMARK 500 2 ALA A 258 79.98 -68.88 REMARK 500 3 ASP A 80 73.59 -155.59 REMARK 500 3 LYS A 94 -70.91 -58.28 REMARK 500 3 ARG A 100 37.93 -94.95 REMARK 500 3 ASP A 107 88.74 -156.79 REMARK 500 REMARK 500 THIS ENTRY HAS 492 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 11 ARG A 112 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5974 RELATED DB: BMRB REMARK 900 BOPE RESONANCE ASSIGNMENTS REMARK 900 RELATED ID: 1R6E RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF SOPE2 REMARK 900 RELATED ID: 1R9K RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF SOPE2 REMARK 900 RELATED ID: 1GZS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOPE-CDC42 COMPLEX REMARK 900 RELATED ID: 2JOL RELATED DB: PDB REMARK 900 AVERAGE OF SOLUTION STRUCTURE OF BOPE DBREF 2JOK A 78 261 UNP Q63K41 Q63K41_BURPS 78 261 SEQADV 2JOK GLY A 76 UNP Q63K41 EXPRESSION TAG SEQADV 2JOK SER A 77 UNP Q63K41 EXPRESSION TAG SEQRES 1 A 186 GLY SER THR GLY ASP ALA LYS GLN ALA ILE ARG HIS PHE SEQRES 2 A 186 VAL ASP GLU ALA VAL LYS GLN VAL ALA HIS ALA ARG THR SEQRES 3 A 186 PRO GLU ILE ARG GLN ASP ALA GLU PHE GLY ARG GLN VAL SEQRES 4 A 186 TYR GLU ALA THR LEU CYS ALA ILE PHE SER GLU ALA LYS SEQRES 5 A 186 ASP ARG PHE CYS MET ASP PRO ALA THR ARG ALA GLY ASN SEQRES 6 A 186 VAL ARG PRO ALA PHE ILE GLU ALA LEU GLY ASP ALA ALA SEQRES 7 A 186 ARG ALA THR GLY LEU PRO GLY ALA ASP LYS GLN GLY VAL SEQRES 8 A 186 PHE THR PRO SER GLY ALA GLY THR ASN PRO LEU TYR THR SEQRES 9 A 186 GLU ILE ARG LEU ARG ALA ASP THR LEU MET GLY ALA GLU SEQRES 10 A 186 LEU ALA ALA ARG PRO GLU TYR ARG GLU LEU GLN PRO TYR SEQRES 11 A 186 ALA ARG GLN GLN ALA ILE ASP LEU VAL ALA ASN ALA LEU SEQRES 12 A 186 PRO ALA GLU ARG SER ASN THR LEU VAL GLU PHE ARG GLN SEQRES 13 A 186 THR VAL GLN THR LEU GLU ALA THR TYR ARG ARG ALA ALA SEQRES 14 A 186 GLN ASP ALA SER ARG ASP GLU LYS GLY ALA THR ASN ALA SEQRES 15 A 186 ALA ASP GLY ALA HELIX 1 1 GLN A 83 ARG A 100 1 18 HELIX 2 2 ARG A 100 ASP A 107 1 8 HELIX 3 3 GLU A 109 ASP A 133 1 25 HELIX 4 4 PRO A 134 ARG A 137 5 4 HELIX 5 5 VAL A 141 GLY A 157 1 17 HELIX 6 6 LEU A 177 MET A 189 1 13 HELIX 7 7 ALA A 191 ARG A 196 1 6 HELIX 8 8 PRO A 197 ARG A 200 5 4 HELIX 9 9 GLN A 203 ALA A 217 1 15 HELIX 10 10 ALA A 220 LYS A 252 1 33 SHEET 1 A 2 ALA A 161 LYS A 163 0 SHEET 2 A 2 VAL A 166 THR A 168 -1 O VAL A 166 N LYS A 163 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1