HEADER UNKNOWN FUNCTION 14-MAR-07 2JOM TITLE NMR STRUCTURE OF RABBIT PRION PROTEIN MUTATION I214V COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 91-228; COMPND 5 SYNONYM: PRP, PRP27-30, PRP33-35C, CD230 ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: PRNP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-30A(+) KEYWDS PRION PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.LI,D.LIN REVDAT 6 27-NOV-24 2JOM 1 REMARK REVDAT 5 20-DEC-23 2JOM 1 REMARK REVDAT 4 20-OCT-21 2JOM 1 REMARK SEQADV REVDAT 3 27-OCT-10 2JOM 1 JRNL REVDAT 2 24-FEB-09 2JOM 1 VERSN REVDAT 1 29-JAN-08 2JOM 0 JRNL AUTH Y.WEN,J.LI,M.XIONG,Y.PENG,W.YAO,J.HONG,D.LIN JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF THE I214V MUTANT OF THE JRNL TITL 2 RABBIT PRION PROTEIN. JRNL REF PLOS ONE V. 5 13273 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20949107 JRNL DOI 10.1371/JOURNAL.PONE.0013273 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100094. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.13 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM PROTEIN, 20 MM SODIUM REMARK 210 ACETATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 MET A 89 REMARK 465 HIS A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 THR A 94 REMARK 465 HIS A 95 REMARK 465 ASN A 96 REMARK 465 GLN A 97 REMARK 465 TRP A 98 REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 PRO A 101 REMARK 465 SER A 102 REMARK 465 LYS A 103 REMARK 465 PRO A 104 REMARK 465 LYS A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 MET A 108 REMARK 465 LYS A 109 REMARK 465 HIS A 110 REMARK 465 VAL A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 GLY A 118 REMARK 465 ALA A 119 REMARK 465 VAL A 120 REMARK 465 VAL A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 LEU A 229 REMARK 465 GLU A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASN A 170 HB2 SER A 173 1.30 REMARK 500 HB2 ASP A 166 HA SER A 221 1.31 REMARK 500 HA VAL A 160 HG1 THR A 182 1.31 REMARK 500 O LYS A 203 H ARG A 207 1.52 REMARK 500 O HIS A 186 H THR A 190 1.52 REMARK 500 HZ3 LYS A 193 OE2 GLU A 195 1.55 REMARK 500 O MET A 212 H GLN A 216 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 131 118.05 67.62 REMARK 500 1 ARG A 135 126.45 69.51 REMARK 500 1 LEU A 137 105.28 62.66 REMARK 500 1 ILE A 138 -76.68 -110.08 REMARK 500 1 HIS A 139 143.19 66.38 REMARK 500 1 ASP A 143 -64.53 -99.60 REMARK 500 1 ASN A 158 60.01 -105.85 REMARK 500 1 ASP A 166 -39.77 -173.43 REMARK 500 1 GLN A 171 -68.96 -97.66 REMARK 500 1 LYS A 184 -67.76 -95.47 REMARK 500 1 HIS A 186 -71.24 -96.22 REMARK 500 1 THR A 187 -16.70 -39.21 REMARK 500 1 THR A 189 -29.48 -143.38 REMARK 500 2 SER A 131 149.20 65.88 REMARK 500 2 ALA A 132 65.48 -103.70 REMARK 500 2 MET A 133 153.91 -45.36 REMARK 500 2 SER A 134 39.58 -99.56 REMARK 500 2 ARG A 135 129.53 72.66 REMARK 500 2 HIS A 139 160.76 46.94 REMARK 500 2 ASP A 143 -62.67 -99.61 REMARK 500 2 ASN A 158 60.71 -106.64 REMARK 500 2 ASP A 166 -29.71 174.37 REMARK 500 2 GLN A 171 -66.69 -92.98 REMARK 500 2 LYS A 184 -67.98 -95.50 REMARK 500 2 HIS A 186 -70.78 -95.88 REMARK 500 2 THR A 187 21.58 -51.82 REMARK 500 2 GLU A 199 -38.99 -35.12 REMARK 500 2 GLN A 226 -60.82 -96.23 REMARK 500 3 SER A 131 120.45 59.46 REMARK 500 3 ARG A 135 126.61 74.74 REMARK 500 3 LEU A 137 82.05 58.72 REMARK 500 3 HIS A 139 -77.42 47.07 REMARK 500 3 PHE A 140 -32.93 79.75 REMARK 500 3 ASP A 143 -65.40 -97.13 REMARK 500 3 ASN A 158 53.13 -111.49 REMARK 500 3 ASP A 166 -36.41 -175.86 REMARK 500 3 GLN A 171 -65.62 -91.56 REMARK 500 4 SER A 131 121.42 62.52 REMARK 500 4 ARG A 135 128.69 71.43 REMARK 500 4 LEU A 137 94.34 64.13 REMARK 500 4 HIS A 139 -68.64 51.63 REMARK 500 4 PHE A 140 -32.12 75.79 REMARK 500 4 ASP A 143 -66.33 -101.41 REMARK 500 4 ASN A 158 50.35 -95.85 REMARK 500 4 ASP A 166 -28.34 178.91 REMARK 500 4 GLN A 171 -67.60 -96.18 REMARK 500 4 LYS A 184 -66.20 -98.29 REMARK 500 4 THR A 187 11.84 -39.42 REMARK 500 5 TYR A 127 107.17 -59.30 REMARK 500 5 SER A 131 121.81 70.83 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 156 PRO A 157 1 -143.35 REMARK 500 TYR A 156 PRO A 157 2 -146.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 2JOM A 91 228 UNP Q95211 PRIO_RABIT 91 228 SEQADV 2JOM MET A 89 UNP Q95211 INITIATING METHIONINE SEQADV 2JOM HIS A 90 UNP Q95211 EXPRESSION TAG SEQADV 2JOM VAL A 214 UNP Q95211 ILE 214 ENGINEERED MUTATION SEQADV 2JOM LEU A 229 UNP Q95211 EXPRESSION TAG SEQADV 2JOM GLU A 230 UNP Q95211 EXPRESSION TAG SEQADV 2JOM HIS A 231 UNP Q95211 EXPRESSION TAG SEQADV 2JOM HIS A 232 UNP Q95211 EXPRESSION TAG SEQADV 2JOM HIS A 233 UNP Q95211 EXPRESSION TAG SEQADV 2JOM HIS A 234 UNP Q95211 EXPRESSION TAG SEQADV 2JOM HIS A 235 UNP Q95211 EXPRESSION TAG SEQADV 2JOM HIS A 236 UNP Q95211 EXPRESSION TAG SEQRES 1 A 148 MET HIS GLN GLY GLY THR HIS ASN GLN TRP GLY LYS PRO SEQRES 2 A 148 SER LYS PRO LYS THR SER MET LYS HIS VAL ALA GLY ALA SEQRES 3 A 148 ALA ALA ALA GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR SEQRES 4 A 148 MET LEU GLY SER ALA MET SER ARG PRO LEU ILE HIS PHE SEQRES 5 A 148 GLY ASN ASP TYR GLU ASP ARG TYR TYR ARG GLU ASN MET SEQRES 6 A 148 TYR ARG TYR PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP SEQRES 7 A 148 GLN TYR SER ASN GLN ASN SER PHE VAL HIS ASP CYS VAL SEQRES 8 A 148 ASN ILE THR VAL LYS GLN HIS THR VAL THR THR THR THR SEQRES 9 A 148 LYS GLY GLU ASN PHE THR GLU THR ASP ILE LYS ILE MET SEQRES 10 A 148 GLU ARG VAL VAL GLU GLN MET CYS VAL THR GLN TYR GLN SEQRES 11 A 148 GLN GLU SER GLN ALA ALA TYR GLN ARG ALA LEU GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS HELIX 1 1 ASP A 143 TYR A 156 1 14 HELIX 2 2 PHE A 174 HIS A 186 1 13 HELIX 3 3 THR A 198 ALA A 224 1 27 SHEET 1 A 2 MET A 128 GLY A 130 0 SHEET 2 A 2 VAL A 160 TYR A 162 -1 O TYR A 162 N MET A 128 SSBOND 1 CYS A 178 CYS A 213 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1