HEADER BLOOD CLOTTING 14-MAR-07 2JOO TITLE THE NMR SOLUTION STRUCTURE OF RECOMBINANT RGD-HIRUDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIRUDIN VARIANT-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEPIRUDIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 3 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 4 ORGANISM_TAXID: 6421; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS MAINLY BETA, BLOOD CLOTTING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.SONG,W.MO,X.LIU,X.YAN,H.SONG,L.DAI REVDAT 4 20-DEC-23 2JOO 1 REMARK REVDAT 3 20-OCT-21 2JOO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JOO 1 VERSN REVDAT 1 18-MAR-08 2JOO 0 JRNL AUTH X.SONG,W.MO,X.LIU,L.ZHU,X.YAN,H.SONG,L.DAI JRNL TITL THE NMR SOLUTION STRUCTURE OF RECOMBINANT RGD-HIRUDIN JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 360 103 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17585879 JRNL DOI 10.1016/J.BBRC.2007.06.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100096. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM RGD-HIRUDIN, 0.02MOL/L REMARK 210 NA2HPO4/NAH2PO4 BUFFER, PH 7.0, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H NOESY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : CLOSEST TO THE AVERAGE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ASN A 52 REMARK 465 GLN A 53 REMARK 465 GLY A 54 REMARK 465 ASP A 55 REMARK 465 PHE A 56 REMARK 465 GLU A 57 REMARK 465 PRO A 58 REMARK 465 ILE A 59 REMARK 465 PRO A 60 REMARK 465 GLU A 61 REMARK 465 ASP A 62 REMARK 465 ALA A 63 REMARK 465 TYR A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 11 HG3 LYS A 47 1.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 12 -59.26 -127.61 REMARK 500 1 LEU A 13 59.50 -60.64 REMARK 500 1 CYS A 16 -72.87 -86.56 REMARK 500 1 SER A 35 53.55 -99.58 REMARK 500 1 GLN A 49 -28.18 -151.47 REMARK 500 2 THR A 4 -159.33 -121.91 REMARK 500 2 ASN A 12 -60.02 -129.23 REMARK 500 2 LEU A 13 60.65 -59.66 REMARK 500 2 CYS A 16 -79.42 -98.12 REMARK 500 2 ARG A 32 79.82 -154.09 REMARK 500 2 GLN A 49 -55.66 -164.07 REMARK 500 3 ASN A 12 -57.38 -134.31 REMARK 500 3 LEU A 13 59.20 -63.26 REMARK 500 3 CYS A 16 -77.83 -74.16 REMARK 500 3 ASN A 37 80.08 -153.87 REMARK 500 3 GLN A 49 -38.59 -139.02 REMARK 500 4 VAL A 2 76.03 -100.04 REMARK 500 4 ASN A 12 -58.19 -135.62 REMARK 500 4 LEU A 13 60.56 -61.75 REMARK 500 4 CYS A 16 -74.93 -82.34 REMARK 500 5 ASN A 12 -61.85 -126.79 REMARK 500 5 LEU A 13 63.04 -58.99 REMARK 500 5 CYS A 16 -77.55 -61.30 REMARK 500 5 ASN A 37 82.28 -153.41 REMARK 500 5 GLN A 49 -33.87 -133.38 REMARK 500 6 ASN A 12 -58.00 -134.93 REMARK 500 6 LEU A 13 61.81 -58.16 REMARK 500 6 CYS A 16 -74.49 -73.79 REMARK 500 6 SER A 35 30.65 -90.73 REMARK 500 7 THR A 4 -167.89 -125.40 REMARK 500 7 ASN A 12 -55.20 -159.04 REMARK 500 7 LEU A 13 61.34 -60.80 REMARK 500 7 CYS A 16 -65.04 -92.65 REMARK 500 7 SER A 35 37.29 -91.64 REMARK 500 7 ASN A 37 75.28 -155.10 REMARK 500 7 SER A 50 -92.57 -102.98 REMARK 500 8 VAL A 2 79.89 -112.62 REMARK 500 8 THR A 4 -159.88 -134.91 REMARK 500 8 ASN A 12 -57.12 -136.77 REMARK 500 8 LEU A 13 61.39 -59.55 REMARK 500 8 CYS A 16 -70.85 -94.57 REMARK 500 8 ARG A 32 114.46 -169.26 REMARK 500 8 ASP A 34 48.75 -98.43 REMARK 500 8 ASN A 37 81.71 -154.70 REMARK 500 9 ASN A 12 -59.24 -132.74 REMARK 500 9 LEU A 13 61.47 -60.29 REMARK 500 9 CYS A 16 -70.72 -60.66 REMARK 500 9 LYS A 36 -32.50 -135.37 REMARK 500 9 ASN A 37 77.70 -155.64 REMARK 500 9 GLN A 49 -66.23 -150.25 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JOO A 1 66 UNP P01050 ITH1_HIRME 1 65 SEQADV 2JOO ARG A 32 UNP P01050 SER 32 ENGINEERED MUTATION SEQADV 2JOO GLY A 33 UNP P01050 ASP 33 ENGINEERED MUTATION SEQADV 2JOO ASP A 34 UNP P01050 GLY 34 ENGINEERED MUTATION SEQADV 2JOO SER A 35 UNP P01050 GLU 35 ENGINEERED MUTATION SEQADV 2JOO GLN A 53 UNP P01050 ASP 53 ENGINEERED MUTATION SEQADV 2JOO PRO A 58 UNP P01050 GLU 58 ENGINEERED MUTATION SEQADV 2JOO ASP A 62 UNP P01050 GLU 62 ENGINEERED MUTATION SEQADV 2JOO ALA A 63 UNP P01050 TYR 63 ENGINEERED MUTATION SEQADV 2JOO TYR A 64 UNP P01050 LEU 64 ENGINEERED MUTATION SEQADV 2JOO ASP A 65 UNP P01050 GLN 65 ENGINEERED MUTATION SEQADV 2JOO GLU A 66 UNP P01050 EXPRESSION TAG SEQRES 1 A 66 VAL VAL TYR THR ASP CYS THR GLU SER GLY GLN ASN LEU SEQRES 2 A 66 CYS LEU CYS GLU GLY SER ASN VAL CYS GLY GLN GLY ASN SEQRES 3 A 66 LYS CYS ILE LEU GLY ARG GLY ASP SER LYS ASN GLN CYS SEQRES 4 A 66 VAL THR GLY GLU GLY THR PRO LYS PRO GLN SER HIS ASN SEQRES 5 A 66 GLN GLY ASP PHE GLU PRO ILE PRO GLU ASP ALA TYR ASP SEQRES 6 A 66 GLU SHEET 1 A 2 ASN A 26 ILE A 29 0 SHEET 2 A 2 GLN A 38 THR A 41 -1 O VAL A 40 N LYS A 27 SSBOND 1 CYS A 6 CYS A 14 1555 1555 2.88 SSBOND 2 CYS A 16 CYS A 28 1555 1555 2.83 SSBOND 3 CYS A 22 CYS A 39 1555 1555 2.83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1