HEADER TRANSCRIPTION/DNA 01-MAY-07 2JPA TITLE STRUCTURE OF THE WILMS TUMOR SUPPRESSOR PROTEIN ZINC FINGER DOMAIN TITLE 2 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*DCP*DGP*DCP*DGP*DGP*DGP*DGP*DGP*DCP*DGP*DTP*DCP*DTP*DG)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*DCP*DAP*DGP*DAP*DCP*DGP*DCP*DCP*DCP*DCP*DCP*DGP*DCP*DG)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: WILMS TUMOR 1; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: RESIDUES 174-291; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: WT1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PET21D KEYWDS DNA BINDING, NUCLEIC ACID RECOGNITION, RESIDUAL DIPOLAR COUPLING, KEYWDS 2 ZINC FINGER, METAL-BINDING, TRANSCRIPTION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.STOLL,B.M.LEE,E.W.DEBLER,J.H.LAITY,I.A.WILSON,H.J.DYSON,P.E.WRIGHT REVDAT 3 05-FEB-20 2JPA 1 SOURCE REMARK SEQADV REVDAT 2 24-FEB-09 2JPA 1 VERSN REVDAT 1 30-OCT-07 2JPA 0 JRNL AUTH R.STOLL,B.M.LEE,E.W.DEBLER,J.H.LAITY,I.A.WILSON,H.J.DYSON, JRNL AUTH 2 P.E.WRIGHT JRNL TITL STRUCTURE OF THE WILMS TUMOR SUPPRESSOR PROTEIN ZINC FINGER JRNL TITL 2 DOMAIN BOUND TO DNA JRNL REF J.MOL.BIOL. V. 372 1227 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17716689 JRNL DOI 10.1016/J.JMB.2007.07.017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER, AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLL (AMBER), CASE, DARDEN, REMARK 3 CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, AND REMARK 3 KOLL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JPA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000100118. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 WT1-14MER, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : FILTER-EDIT NOESY; IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 64 HG SER A 77 1.49 REMARK 500 O PRO A 100 HG SER A 101 1.51 REMARK 500 O ARG A 29 HG1 THR A 32 1.52 REMARK 500 HH TYR A 11 O GLU A 34 1.52 REMARK 500 HG SER A 22 OE1 GLN A 25 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT B 134 C5' DT B 134 C4' 0.042 REMARK 500 1 DG B 137 C5' DG B 137 C4' 0.058 REMARK 500 2 DG B 130 C5' DG B 130 C4' 0.047 REMARK 500 2 DT B 134 C5' DT B 134 C4' 0.054 REMARK 500 2 DT B 136 O4' DT B 136 C4' -0.065 REMARK 500 3 DT B 134 P DT B 134 O5' 0.066 REMARK 500 3 DT B 134 N1 DT B 134 C2 0.051 REMARK 500 4 DT B 134 O4' DT B 134 C1' -0.081 REMARK 500 4 DT B 134 O4' DT B 134 C4' -0.076 REMARK 500 4 DT B 134 N1 DT B 134 C2 0.061 REMARK 500 4 DT B 136 O4' DT B 136 C1' -0.078 REMARK 500 4 DT B 136 O4' DT B 136 C4' -0.069 REMARK 500 4 DT B 136 C5 DT B 136 C7 0.087 REMARK 500 4 DG C 140 P DG C 140 O5' 0.061 REMARK 500 5 DG B 127 C5' DG B 127 C4' 0.054 REMARK 500 5 DG B 128 C5' DG B 128 C4' 0.058 REMARK 500 5 DT B 136 C5' DT B 136 C4' 0.047 REMARK 500 5 DC C 147 C5' DC C 147 C4' 0.055 REMARK 500 6 DG B 127 P DG B 127 O5' 0.076 REMARK 500 6 DG B 128 O4' DG B 128 C4' -0.068 REMARK 500 6 DG B 129 C5' DG B 129 C4' 0.048 REMARK 500 6 DG B 129 N1 DG B 129 C2 -0.052 REMARK 500 6 DG B 131 C5' DG B 131 C4' 0.053 REMARK 500 6 DT B 134 O3' DT B 134 C3' -0.056 REMARK 500 7 DC B 132 C5' DC B 132 C4' 0.044 REMARK 500 7 DT B 136 C5 DT B 136 C7 0.042 REMARK 500 7 DG C 143 C4' DG C 143 C3' 0.064 REMARK 500 7 DC C 144 P DC C 144 O5' -0.061 REMARK 500 7 DC C 144 O3' DC C 144 C3' -0.043 REMARK 500 8 DG B 133 C5' DG B 133 C4' 0.051 REMARK 500 8 DG B 133 O3' DG B 133 C3' -0.041 REMARK 500 8 DT B 134 C5' DT B 134 C4' 0.044 REMARK 500 8 DT B 134 C5 DT B 134 C6 0.048 REMARK 500 8 DC B 135 C5' DC B 135 C4' 0.061 REMARK 500 8 DT B 136 O3' DT B 136 C3' -0.049 REMARK 500 8 DT B 136 C5 DT B 136 C7 0.052 REMARK 500 9 DG B 131 O3' DG B 131 C3' -0.037 REMARK 500 9 DG B 133 C5' DG B 133 C4' 0.079 REMARK 500 9 DT B 134 C5' DT B 134 C4' 0.045 REMARK 500 9 DT B 136 C5' DT B 136 C4' 0.063 REMARK 500 9 DT B 136 O4' DT B 136 C4' -0.092 REMARK 500 9 DG B 137 N9 DG B 137 C4 0.065 REMARK 500 9 DC C 147 C5' DC C 147 C4' 0.042 REMARK 500 10 DG B 133 C5' DG B 133 C4' 0.063 REMARK 500 11 DG B 131 C5' DG B 131 C4' 0.043 REMARK 500 11 DT B 134 C5' DT B 134 C4' 0.063 REMARK 500 11 DC B 135 C4 DC B 135 N4 -0.060 REMARK 500 11 DG C 140 C5' DG C 140 C4' 0.051 REMARK 500 12 DG B 129 P DG B 129 O5' 0.067 REMARK 500 12 DG B 133 O3' DG B 133 C3' -0.038 REMARK 500 REMARK 500 THIS ENTRY HAS 75 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC B 132 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DC B 135 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DC C 144 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DC C 147 O4' - C4' - C3' ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DC C 150 O4' - C4' - C3' ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DG C 151 O4' - C4' - C3' ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG C 151 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 1 HIS A 23 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 1 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 DC B 126 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 2 DG B 128 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 2 DG B 131 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 2 DT B 134 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DT B 134 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 2 DT B 136 O4' - C4' - C3' ANGL. DEV. = 7.6 DEGREES REMARK 500 2 DG B 137 O4' - C1' - C2' ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DA C 141 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 2 DC C 144 O4' - C4' - C3' ANGL. DEV. = 4.3 DEGREES REMARK 500 2 DC C 148 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 2 HIS A 23 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 2 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 VAL A 113 CA - CB - CG2 ANGL. DEV. = 12.4 DEGREES REMARK 500 3 DT B 134 C5' - C4' - O4' ANGL. DEV. = 7.6 DEGREES REMARK 500 3 DG B 137 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DA C 139 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 3 DC C 148 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 3 DC C 148 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 3 HIS A 23 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 3 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 4 DC B 126 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 4 DG B 130 O4' - C4' - C3' ANGL. DEV. = 5.2 DEGREES REMARK 500 4 DG B 131 O4' - C4' - C3' ANGL. DEV. = 4.4 DEGREES REMARK 500 4 DT B 134 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 4 DC B 135 O5' - C5' - C4' ANGL. DEV. = -5.9 DEGREES REMARK 500 4 DC B 135 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 4 DT B 136 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 4 DT B 136 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 329 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 17.22 -163.13 REMARK 500 1 CYS A 14 -75.89 -124.89 REMARK 500 1 GLU A 45 29.84 -160.87 REMARK 500 1 THR A 71 -65.25 -93.46 REMARK 500 1 PRO A 100 7.35 -68.48 REMARK 500 1 SER A 101 74.40 -174.88 REMARK 500 1 CYS A 102 -80.70 -164.48 REMARK 500 2 CYS A 14 -73.65 -126.50 REMARK 500 2 LYS A 35 65.60 -119.51 REMARK 500 2 LYS A 42 -45.09 75.79 REMARK 500 2 CYS A 44 -76.86 -148.50 REMARK 500 2 LYS A 65 77.88 -115.84 REMARK 500 2 CYS A 72 -104.28 -103.84 REMARK 500 2 GLN A 73 11.04 -164.59 REMARK 500 2 PRO A 100 20.34 -68.03 REMARK 500 2 SER A 101 25.59 -164.39 REMARK 500 2 GLN A 103 36.16 -163.82 REMARK 500 3 THR A 71 -68.23 -90.74 REMARK 500 3 CYS A 102 -84.02 -167.77 REMARK 500 4 CYS A 14 -81.36 -115.40 REMARK 500 4 CYS A 44 -74.07 -131.20 REMARK 500 4 THR A 71 -74.74 -96.80 REMARK 500 4 PRO A 100 26.93 -73.30 REMARK 500 4 SER A 101 24.73 -162.17 REMARK 500 4 GLN A 103 27.29 -166.53 REMARK 500 5 GLU A 45 28.51 -157.29 REMARK 500 5 CYS A 72 -104.38 -108.32 REMARK 500 5 GLN A 73 6.39 -163.00 REMARK 500 5 PRO A 100 33.36 -74.68 REMARK 500 5 SER A 101 7.94 -164.47 REMARK 500 5 GLN A 103 22.70 -164.93 REMARK 500 6 CYS A 14 -80.89 -133.09 REMARK 500 6 CYS A 44 -77.37 -104.68 REMARK 500 6 THR A 71 -75.00 -99.80 REMARK 500 6 GLN A 103 21.86 -164.60 REMARK 500 7 SER A 2 12.67 -158.45 REMARK 500 7 GLU A 45 28.80 -153.10 REMARK 500 7 THR A 71 -73.53 -93.34 REMARK 500 7 CYS A 102 -80.21 -168.25 REMARK 500 8 SER A 2 11.83 -154.97 REMARK 500 8 CYS A 14 -81.37 -79.39 REMARK 500 8 GLU A 34 -50.19 -122.17 REMARK 500 8 CYS A 44 -72.95 -93.49 REMARK 500 8 GLU A 45 16.20 57.31 REMARK 500 8 THR A 71 -75.26 -90.79 REMARK 500 8 LYS A 93 78.51 -119.93 REMARK 500 8 GLN A 103 29.95 -162.17 REMARK 500 9 PRO A 6 -100.69 -82.48 REMARK 500 9 CYS A 14 -81.89 -85.91 REMARK 500 9 GLU A 45 28.91 -160.49 REMARK 500 REMARK 500 THIS ENTRY HAS 130 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC B 124 0.07 SIDE CHAIN REMARK 500 1 DG B 127 0.05 SIDE CHAIN REMARK 500 1 DG B 129 0.07 SIDE CHAIN REMARK 500 1 DT B 136 0.07 SIDE CHAIN REMARK 500 1 TYR A 18 0.12 SIDE CHAIN REMARK 500 1 ARG A 74 0.08 SIDE CHAIN REMARK 500 1 ARG A 114 0.12 SIDE CHAIN REMARK 500 2 DC B 135 0.07 SIDE CHAIN REMARK 500 2 DG B 137 0.07 SIDE CHAIN REMARK 500 2 DG C 151 0.08 SIDE CHAIN REMARK 500 2 TYR A 18 0.10 SIDE CHAIN REMARK 500 2 ARG A 47 0.09 SIDE CHAIN REMARK 500 3 DG B 128 0.08 SIDE CHAIN REMARK 500 3 DC C 144 0.06 SIDE CHAIN REMARK 500 3 DC C 145 0.07 SIDE CHAIN REMARK 500 3 DG C 151 0.07 SIDE CHAIN REMARK 500 3 TYR A 18 0.15 SIDE CHAIN REMARK 500 3 ARG A 47 0.08 SIDE CHAIN REMARK 500 3 PHE A 48 0.09 SIDE CHAIN REMARK 500 4 DG B 129 0.07 SIDE CHAIN REMARK 500 4 DG B 133 0.07 SIDE CHAIN REMARK 500 4 DC B 135 0.06 SIDE CHAIN REMARK 500 4 DG C 143 0.06 SIDE CHAIN REMARK 500 4 DG C 151 0.08 SIDE CHAIN REMARK 500 4 TYR A 18 0.12 SIDE CHAIN REMARK 500 4 PHE A 48 0.08 SIDE CHAIN REMARK 500 5 DG B 127 0.06 SIDE CHAIN REMARK 500 5 DG B 128 0.08 SIDE CHAIN REMARK 500 5 DG B 129 0.11 SIDE CHAIN REMARK 500 5 DG B 130 0.08 SIDE CHAIN REMARK 500 5 DG C 151 0.07 SIDE CHAIN REMARK 500 5 TYR A 18 0.14 SIDE CHAIN REMARK 500 5 PHE A 48 0.08 SIDE CHAIN REMARK 500 5 ARG A 56 0.09 SIDE CHAIN REMARK 500 6 DG B 128 0.08 SIDE CHAIN REMARK 500 6 DC C 144 0.07 SIDE CHAIN REMARK 500 6 TYR A 18 0.10 SIDE CHAIN REMARK 500 6 PHE A 41 0.08 SIDE CHAIN REMARK 500 7 DG C 143 0.09 SIDE CHAIN REMARK 500 7 TYR A 18 0.15 SIDE CHAIN REMARK 500 7 ARG A 87 0.09 SIDE CHAIN REMARK 500 8 DG B 127 0.06 SIDE CHAIN REMARK 500 8 DG B 129 0.06 SIDE CHAIN REMARK 500 8 DG B 133 0.07 SIDE CHAIN REMARK 500 8 DG C 151 0.09 SIDE CHAIN REMARK 500 8 TYR A 18 0.13 SIDE CHAIN REMARK 500 8 HIS A 57 0.08 SIDE CHAIN REMARK 500 8 HIS A 61 0.10 SIDE CHAIN REMARK 500 9 DG B 127 0.06 SIDE CHAIN REMARK 500 9 DG B 129 0.06 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 120 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 14 SG 113.6 REMARK 620 3 HIS A 27 NE2 109.5 111.2 REMARK 620 4 HIS A 31 NE2 106.0 112.1 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 132 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 CYS A 44 SG 105.6 REMARK 620 3 HIS A 57 NE2 110.0 119.9 REMARK 620 4 HIS A 61 NE2 116.8 106.8 98.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 133 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 CYS A 72 SG 110.9 REMARK 620 3 HIS A 85 NE2 107.1 111.2 REMARK 620 4 HIS A 89 NE2 114.6 107.1 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 134 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 102 SG 118.6 REMARK 620 3 HIS A 115 NE2 107.0 106.3 REMARK 620 4 HIS A 119 NE2 116.1 111.1 94.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PRT RELATED DB: PDB REMARK 900 RELATED ID: 2JP9 RELATED DB: PDB REMARK 900 RELATED ID: 15533 RELATED DB: BMRB DBREF 2JPA A 2 119 UNP Q4VXV4 Q4VXV4_HUMAN 174 291 DBREF 2JPA B 124 137 PDB 2JPA 2JPA 124 137 DBREF 2JPA C 138 151 PDB 2JPA 2JPA 138 151 SEQADV 2JPA ALA A 1 UNP Q4VXV4 EXPRESSION TAG SEQRES 1 B 14 DC DG DC DG DG DG DG DG DC DG DT DC DT SEQRES 2 B 14 DG SEQRES 1 C 14 DC DA DG DA DC DG DC DC DC DC DC DG DC SEQRES 2 C 14 DG SEQRES 1 A 119 ALA SER GLU LYS ARG PRO PHE MET CYS ALA TYR PRO GLY SEQRES 2 A 119 CYS ASN LYS ARG TYR PHE LYS LEU SER HIS LEU GLN MET SEQRES 3 A 119 HIS SER ARG LYS HIS THR GLY GLU LYS PRO TYR GLN CYS SEQRES 4 A 119 ASP PHE LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP SEQRES 5 A 119 GLN LEU LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS SEQRES 6 A 119 PRO PHE GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SEQRES 7 A 119 SER ASP HIS LEU LYS THR HIS THR ARG THR HIS THR GLY SEQRES 8 A 119 GLU LYS PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS SEQRES 9 A 119 LYS PHE ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN SEQRES 10 A 119 MET HIS HET ZN A 131 1 HET ZN A 132 1 HET ZN A 133 1 HET ZN A 134 1 HETNAM ZN ZINC ION FORMUL 4 ZN 4(ZN 2+) HELIX 1 1 LYS A 20 GLY A 33 1 14 HELIX 2 2 ARG A 50 GLY A 63 1 14 HELIX 3 3 ARG A 78 GLY A 91 1 14 HELIX 4 4 ARG A 108 MET A 118 1 11 SHEET 1 A 2 PHE A 7 MET A 8 0 SHEET 2 A 2 ARG A 17 TYR A 18 -1 O TYR A 18 N PHE A 7 SHEET 1 B 2 TYR A 37 GLN A 38 0 SHEET 2 B 2 ARG A 47 PHE A 48 -1 O PHE A 48 N TYR A 37 SHEET 1 C 2 PHE A 67 GLN A 68 0 SHEET 2 C 2 LYS A 75 PHE A 76 -1 O PHE A 76 N PHE A 67 SHEET 1 D 2 PHE A 95 SER A 96 0 SHEET 2 D 2 LYS A 105 PHE A 106 -1 O PHE A 106 N PHE A 95 LINK SG CYS A 9 ZN ZN A 131 1555 1555 2.29 LINK SG CYS A 14 ZN ZN A 131 1555 1555 2.29 LINK NE2 HIS A 27 ZN ZN A 131 1555 1555 2.06 LINK NE2 HIS A 31 ZN ZN A 131 1555 1555 2.07 LINK SG CYS A 39 ZN ZN A 132 1555 1555 2.29 LINK SG CYS A 44 ZN ZN A 132 1555 1555 2.29 LINK NE2 HIS A 57 ZN ZN A 132 1555 1555 2.08 LINK NE2 HIS A 61 ZN ZN A 132 1555 1555 2.08 LINK SG CYS A 69 ZN ZN A 133 1555 1555 2.28 LINK SG CYS A 72 ZN ZN A 133 1555 1555 2.26 LINK NE2 HIS A 85 ZN ZN A 133 1555 1555 2.06 LINK NE2 HIS A 89 ZN ZN A 133 1555 1555 2.07 LINK SG CYS A 97 ZN ZN A 134 1555 1555 2.27 LINK SG CYS A 102 ZN ZN A 134 1555 1555 2.27 LINK NE2 HIS A 115 ZN ZN A 134 1555 1555 2.03 LINK NE2 HIS A 119 ZN ZN A 134 1555 1555 2.05 SITE 1 AC1 4 CYS A 9 CYS A 14 HIS A 27 HIS A 31 SITE 1 AC2 4 CYS A 39 CYS A 44 HIS A 57 HIS A 61 SITE 1 AC3 4 CYS A 69 CYS A 72 HIS A 85 HIS A 89 SITE 1 AC4 4 CYS A 97 CYS A 102 HIS A 115 HIS A 119 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1