HEADER DNA BINDING PROTEIN 06-MAY-07 2JPD TITLE SOLUTION STRUCTURE OF THE ERCC1 CENTRAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA EXCISION REPAIR PROTEIN ERCC-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 96-219; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERCC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS PROTEIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TRIPSIANES,G.FOLKERS,C.ZHENG,D.DAS,J.S.GRINSTEAD,R.KAPTEIN, AUTHOR 2 R.BOELENS REVDAT 7 08-MAY-24 2JPD 1 REMARK REVDAT 6 20-DEC-23 2JPD 1 REMARK REVDAT 5 14-JUN-23 2JPD 1 REMARK REVDAT 4 05-FEB-20 2JPD 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JPD 1 VERSN REVDAT 2 09-OCT-07 2JPD 1 JRNL REVDAT 1 04-SEP-07 2JPD 0 JRNL AUTH K.TRIPSIANES,G.E.FOLKERS,C.ZHENG,D.DAS,J.S.GRINSTEAD, JRNL AUTH 2 R.KAPTEIN,R.BOELENS JRNL TITL ANALYSIS OF THE XPA AND SSDNA-BINDING SURFACES ON THE JRNL TITL 2 CENTRAL DOMAIN OF HUMAN ERCC1 REVEALS EVIDENCE FOR JRNL TITL 3 SUBFUNCTIONALIZATION JRNL REF NUCLEIC ACIDS RES. V. 35 5789 2007 JRNL REFN ISSN 0305-1048 JRNL PMID 17720715 JRNL DOI 10.1093/NAR/GKM503 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JPD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000100121. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D (H)CCH 1H- REMARK 210 13C NOESY; 2D NOESY 15N FILTERED REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 95 REMARK 465 GLY A 220 REMARK 465 GLY A 221 REMARK 465 LEU A 222 REMARK 465 GLU A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 117 -13.42 -153.76 REMARK 500 1 ASP A 125 104.34 55.59 REMARK 500 1 ALA A 165 -64.06 -91.85 REMARK 500 2 ARG A 117 -12.41 -151.18 REMARK 500 2 ASP A 125 87.00 59.47 REMARK 500 3 SER A 100 170.83 64.49 REMARK 500 3 ARG A 117 -17.89 -144.83 REMARK 500 3 ASP A 125 86.71 60.49 REMARK 500 3 LYS A 162 -30.85 176.87 REMARK 500 4 ARG A 117 2.13 -154.23 REMARK 500 4 ASP A 125 102.84 49.02 REMARK 500 4 PRO A 128 -162.02 -73.96 REMARK 500 4 LYS A 162 -32.64 176.04 REMARK 500 4 GLU A 216 76.59 -113.54 REMARK 500 5 ASN A 99 71.92 57.84 REMARK 500 5 ARG A 117 -13.08 -147.20 REMARK 500 5 ASP A 125 97.68 60.02 REMARK 500 5 GLU A 216 -87.13 70.61 REMARK 500 5 GLN A 217 -42.43 63.64 REMARK 500 6 ARG A 117 -0.44 -163.20 REMARK 500 6 ASP A 125 84.73 54.29 REMARK 500 6 ALA A 165 -66.20 -95.35 REMARK 500 6 GLU A 216 78.70 -118.04 REMARK 500 7 ARG A 117 6.36 -156.14 REMARK 500 7 ASP A 125 87.25 54.27 REMARK 500 8 SER A 98 107.30 -160.86 REMARK 500 8 ASN A 99 70.44 48.48 REMARK 500 8 ARG A 117 -3.87 -149.33 REMARK 500 8 ASP A 125 89.71 50.13 REMARK 500 8 ALA A 165 -56.59 -130.13 REMARK 500 8 ASP A 193 72.25 61.78 REMARK 500 8 GLU A 216 -68.69 72.82 REMARK 500 8 GLN A 217 -152.36 51.67 REMARK 500 9 ASN A 99 -81.06 -106.12 REMARK 500 9 ARG A 117 -0.93 -154.59 REMARK 500 9 ASP A 125 92.51 53.67 REMARK 500 9 PRO A 128 -169.31 -74.31 REMARK 500 10 SER A 98 90.57 53.22 REMARK 500 10 ASP A 125 92.65 32.78 REMARK 500 11 SER A 98 65.53 -109.24 REMARK 500 11 ASP A 125 92.31 55.07 REMARK 500 11 ASP A 174 30.74 -154.05 REMARK 500 11 GLU A 216 65.03 -113.97 REMARK 500 12 ASN A 99 77.84 52.23 REMARK 500 12 ARG A 117 -0.06 -155.25 REMARK 500 12 ASP A 125 95.25 45.82 REMARK 500 12 ASP A 193 71.24 55.00 REMARK 500 13 SER A 98 -80.99 -46.19 REMARK 500 13 ASN A 99 -51.05 68.76 REMARK 500 13 SER A 100 -172.60 59.04 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 144 0.08 SIDE CHAIN REMARK 500 1 ARG A 207 0.09 SIDE CHAIN REMARK 500 2 ARG A 156 0.12 SIDE CHAIN REMARK 500 11 ARG A 106 0.08 SIDE CHAIN REMARK 500 18 ARG A 106 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15240 RELATED DB: BMRB DBREF 2JPD A 96 219 UNP P07992 ERCC1_HUMAN 96 219 SEQADV 2JPD MET A 95 UNP P07992 EXPRESSION TAG SEQADV 2JPD GLY A 220 UNP P07992 EXPRESSION TAG SEQADV 2JPD GLY A 221 UNP P07992 EXPRESSION TAG SEQADV 2JPD LEU A 222 UNP P07992 EXPRESSION TAG SEQADV 2JPD GLU A 223 UNP P07992 EXPRESSION TAG SEQADV 2JPD HIS A 224 UNP P07992 EXPRESSION TAG SEQADV 2JPD HIS A 225 UNP P07992 EXPRESSION TAG SEQADV 2JPD HIS A 226 UNP P07992 EXPRESSION TAG SEQADV 2JPD HIS A 227 UNP P07992 EXPRESSION TAG SEQADV 2JPD HIS A 228 UNP P07992 EXPRESSION TAG SEQADV 2JPD HIS A 229 UNP P07992 EXPRESSION TAG SEQRES 1 A 135 MET ALA LYS SER ASN SER ILE ILE VAL SER PRO ARG GLN SEQRES 2 A 135 ARG GLY ASN PRO VAL LEU LYS PHE VAL ARG ASN VAL PRO SEQRES 3 A 135 TRP GLU PHE GLY ASP VAL ILE PRO ASP TYR VAL LEU GLY SEQRES 4 A 135 GLN SER THR CYS ALA LEU PHE LEU SER LEU ARG TYR HIS SEQRES 5 A 135 ASN LEU HIS PRO ASP TYR ILE HIS GLY ARG LEU GLN SER SEQRES 6 A 135 LEU GLY LYS ASN PHE ALA LEU ARG VAL LEU LEU VAL GLN SEQRES 7 A 135 VAL ASP VAL LYS ASP PRO GLN GLN ALA LEU LYS GLU LEU SEQRES 8 A 135 ALA LYS MET CYS ILE LEU ALA ASP CYS THR LEU ILE LEU SEQRES 9 A 135 ALA TRP SER PRO GLU GLU ALA GLY ARG TYR LEU GLU THR SEQRES 10 A 135 TYR LYS ALA TYR GLU GLN LYS PRO GLY GLY LEU GLU HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS HELIX 1 1 PRO A 105 ARG A 108 5 4 HELIX 2 2 ASN A 110 VAL A 116 1 7 HELIX 3 3 LEU A 143 HIS A 149 1 7 HELIX 4 4 PRO A 150 PHE A 164 1 15 HELIX 5 5 PRO A 178 ASP A 193 1 16 HELIX 6 6 SER A 201 GLU A 216 1 16 SHEET 1 A 6 TRP A 121 PHE A 123 0 SHEET 2 A 6 ILE A 101 VAL A 103 1 N VAL A 103 O GLU A 122 SHEET 3 A 6 TYR A 130 GLY A 133 -1 O VAL A 131 N ILE A 102 SHEET 4 A 6 THR A 136 SER A 142 -1 O ALA A 138 N TYR A 130 SHEET 5 A 6 LEU A 166 GLN A 172 1 O VAL A 168 N CYS A 137 SHEET 6 A 6 THR A 195 ALA A 199 1 O THR A 195 N LEU A 169 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1