HEADER PROTEIN BINDING 23-MAY-07 2JPS TITLE NAB2 N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-120; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NAB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30A KEYWDS PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 45 AUTHOR R.GRANT,N.J.MARSHALL,J.YANG,M.FASKEN,S.KELLY,M.T.HARREMAN,D.NEUHAUS, AUTHOR 2 A.H.CORBETT,M.STEWART REVDAT 4 20-DEC-23 2JPS 1 REMARK REVDAT 3 09-MAR-22 2JPS 1 REMARK REVDAT 2 24-FEB-09 2JPS 1 VERSN REVDAT 1 18-MAR-08 2JPS 0 JRNL AUTH R.P.GRANT,N.J.MARSHALL,J.C.YANG,M.B.FASKEN,S.M.KELLY, JRNL AUTH 2 M.T.HARREMAN,D.NEUHAUS,A.H.CORBETT,M.STEWART JRNL TITL STRUCTURE OF THE N-TERMINAL MLP1-BINDING DOMAIN OF THE JRNL TITL 2 SACCHAROMYCES CEREVISIAE MRNA-BINDING PROTEIN, NAB2 JRNL REF J.MOL.BIOL. V. 376 1048 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18190927 JRNL DOI 10.1016/J.JMB.2007.11.087 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JPS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000100136. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-98% 13C; U-98% 15N] REMARK 210 NAB2_NTD, 25 MM SODIUM PHOSPHATE, REMARK 210 10 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% [U-2H] D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC CT; 2D 1H-1H REMARK 210 NOESY; 2D 1H-1H NOESY 15N REMARK 210 FILTERED IN F2; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNHAHB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 45 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 56 75.05 -108.95 REMARK 500 2 PHE A 56 75.23 -110.28 REMARK 500 2 ASP A 103 69.37 -117.40 REMARK 500 2 ILE A 104 79.78 53.32 REMARK 500 3 GLU A 26 -170.19 53.42 REMARK 500 3 PHE A 56 75.31 -108.74 REMARK 500 3 ASP A 103 79.98 -119.20 REMARK 500 3 ILE A 104 59.83 -141.07 REMARK 500 4 GLU A 26 162.57 58.79 REMARK 500 4 PHE A 56 74.84 -107.79 REMARK 500 4 ILE A 104 -58.61 -122.28 REMARK 500 5 SER A 2 47.52 -142.86 REMARK 500 5 GLN A 3 74.29 53.09 REMARK 500 5 PHE A 56 74.86 -110.70 REMARK 500 5 ASP A 103 -59.45 -142.42 REMARK 500 6 PHE A 56 72.40 -107.70 REMARK 500 6 ILE A 104 -58.77 -122.21 REMARK 500 7 SER A 2 -166.79 -117.26 REMARK 500 7 GLU A 26 177.05 54.14 REMARK 500 7 PHE A 56 72.98 -107.07 REMARK 500 7 ILE A 104 76.80 -116.06 REMARK 500 8 GLN A 3 51.06 -140.09 REMARK 500 8 GLU A 26 168.84 56.15 REMARK 500 8 PHE A 56 73.29 -105.96 REMARK 500 8 SER A 102 79.17 52.79 REMARK 500 8 ILE A 104 79.19 53.38 REMARK 500 9 PHE A 56 74.78 -107.90 REMARK 500 9 ASP A 103 -169.95 -121.71 REMARK 500 10 PHE A 56 75.15 -105.74 REMARK 500 10 GLN A 101 43.05 -109.40 REMARK 500 10 SER A 102 -51.36 -175.16 REMARK 500 11 GLU A 26 179.77 52.87 REMARK 500 11 PHE A 56 76.05 -107.34 REMARK 500 12 GLN A 3 44.71 -140.80 REMARK 500 12 PHE A 56 76.46 -109.83 REMARK 500 12 SER A 102 73.82 52.68 REMARK 500 12 ILE A 104 -59.09 -124.11 REMARK 500 13 SER A 2 -169.28 -118.81 REMARK 500 13 PHE A 56 74.04 -108.61 REMARK 500 14 PHE A 56 74.08 -107.80 REMARK 500 15 ASN A 25 -164.40 -113.62 REMARK 500 15 GLU A 26 -170.80 54.15 REMARK 500 15 PHE A 56 74.59 -111.32 REMARK 500 15 ASP A 103 -165.63 -120.45 REMARK 500 16 SER A 2 -58.74 -144.56 REMARK 500 16 PHE A 56 74.74 -105.87 REMARK 500 17 PHE A 56 73.04 -108.05 REMARK 500 17 GLN A 101 40.89 -107.03 REMARK 500 17 SER A 102 46.15 -172.19 REMARK 500 17 ASP A 103 -169.88 -128.53 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 61 0.23 SIDE CHAIN REMARK 500 1 ARG A 92 0.23 SIDE CHAIN REMARK 500 2 ARG A 61 0.26 SIDE CHAIN REMARK 500 2 ARG A 92 0.28 SIDE CHAIN REMARK 500 3 ARG A 61 0.24 SIDE CHAIN REMARK 500 3 ARG A 92 0.32 SIDE CHAIN REMARK 500 4 ARG A 61 0.30 SIDE CHAIN REMARK 500 4 ARG A 92 0.28 SIDE CHAIN REMARK 500 5 ARG A 61 0.28 SIDE CHAIN REMARK 500 5 ARG A 92 0.29 SIDE CHAIN REMARK 500 6 ARG A 61 0.24 SIDE CHAIN REMARK 500 6 ARG A 92 0.28 SIDE CHAIN REMARK 500 7 ARG A 61 0.24 SIDE CHAIN REMARK 500 7 ARG A 92 0.23 SIDE CHAIN REMARK 500 8 ARG A 61 0.32 SIDE CHAIN REMARK 500 8 ARG A 92 0.31 SIDE CHAIN REMARK 500 9 ARG A 61 0.30 SIDE CHAIN REMARK 500 9 ARG A 92 0.25 SIDE CHAIN REMARK 500 10 ARG A 61 0.21 SIDE CHAIN REMARK 500 10 ARG A 92 0.23 SIDE CHAIN REMARK 500 11 ARG A 61 0.25 SIDE CHAIN REMARK 500 11 ARG A 92 0.27 SIDE CHAIN REMARK 500 12 ARG A 61 0.25 SIDE CHAIN REMARK 500 12 ARG A 92 0.31 SIDE CHAIN REMARK 500 13 ARG A 61 0.25 SIDE CHAIN REMARK 500 13 ARG A 92 0.23 SIDE CHAIN REMARK 500 14 ARG A 61 0.28 SIDE CHAIN REMARK 500 14 ARG A 92 0.24 SIDE CHAIN REMARK 500 15 ARG A 61 0.32 SIDE CHAIN REMARK 500 15 ARG A 92 0.32 SIDE CHAIN REMARK 500 16 ARG A 61 0.26 SIDE CHAIN REMARK 500 16 ARG A 92 0.31 SIDE CHAIN REMARK 500 17 ARG A 61 0.26 SIDE CHAIN REMARK 500 17 ARG A 92 0.30 SIDE CHAIN REMARK 500 18 ARG A 61 0.32 SIDE CHAIN REMARK 500 18 ARG A 92 0.23 SIDE CHAIN REMARK 500 19 ARG A 61 0.22 SIDE CHAIN REMARK 500 19 ARG A 92 0.29 SIDE CHAIN REMARK 500 20 ARG A 61 0.25 SIDE CHAIN REMARK 500 20 ARG A 92 0.27 SIDE CHAIN REMARK 500 21 ARG A 61 0.23 SIDE CHAIN REMARK 500 21 ARG A 92 0.29 SIDE CHAIN REMARK 500 22 ARG A 61 0.31 SIDE CHAIN REMARK 500 22 ARG A 92 0.30 SIDE CHAIN REMARK 500 23 ARG A 61 0.32 SIDE CHAIN REMARK 500 23 ARG A 92 0.31 SIDE CHAIN REMARK 500 24 ARG A 61 0.29 SIDE CHAIN REMARK 500 24 ARG A 92 0.26 SIDE CHAIN REMARK 500 25 ARG A 61 0.25 SIDE CHAIN REMARK 500 25 ARG A 92 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 90 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15263 RELATED DB: BMRB DBREF 2JPS A 1 105 UNP P32505 NAB2_YEAST 1 105 SEQRES 1 A 105 MET SER GLN GLU GLN TYR THR GLU ASN LEU LYS VAL ILE SEQRES 2 A 105 VAL ALA GLU LYS LEU ALA GLY ILE PRO ASN PHE ASN GLU SEQRES 3 A 105 ASP ILE LYS TYR VAL ALA GLU TYR ILE VAL LEU LEU ILE SEQRES 4 A 105 VAL ASN GLY GLY THR VAL GLU SER VAL VAL ASP GLU LEU SEQRES 5 A 105 ALA SER LEU PHE ASP SER VAL SER ARG ASP THR LEU ALA SEQRES 6 A 105 ASN VAL VAL GLN THR ALA PHE PHE ALA LEU GLU ALA LEU SEQRES 7 A 105 GLN GLN GLY GLU SER ALA GLU ASN ILE VAL SER LYS ILE SEQRES 8 A 105 ARG MET MET ASN ALA GLN SER LEU GLY GLN SER ASP ILE SEQRES 9 A 105 ALA HELIX 1 1 GLN A 3 ILE A 21 1 19 HELIX 2 2 ILE A 28 GLY A 42 1 15 HELIX 3 3 THR A 44 PHE A 56 1 13 HELIX 4 4 SER A 60 GLY A 81 1 22 HELIX 5 5 ALA A 84 LEU A 99 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1