HEADER LIPID BINDING PROTEIN 28-MAY-07 2JQ3 TITLE STRUCTURE AND DYNAMICS OF HUMAN APOLIPOPROTEIN C-III COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN C-III; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APO-CIII, APOC-III; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET23B KEYWDS APOCIII, DYNAMICS, APOLIPOPROTEIN, RECEPTOR, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.S.GANGABADAGE,J.ZDUNEK,M.TESSARI,S.NILSSON,G.OLIVECRONA,S.WIJMENGA REVDAT 6 08-MAY-24 2JQ3 1 REMARK REVDAT 5 20-DEC-23 2JQ3 1 REMARK REVDAT 4 19-FEB-20 2JQ3 1 REMARK REVDAT 3 24-FEB-09 2JQ3 1 VERSN REVDAT 2 01-JUL-08 2JQ3 1 JRNL REVDAT 1 29-APR-08 2JQ3 0 JRNL AUTH C.S.GANGABADAGE,J.ZDUNEK,M.TESSARI,S.NILSSON,G.OLIVECRONA, JRNL AUTH 2 S.S.WIJMENGA JRNL TITL STRUCTURE AND DYNAMICS OF HUMAN APOLIPOPROTEIN CIII JRNL REF J.BIOL.CHEM. V. 283 17416 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18408013 JRNL DOI 10.1074/JBC.M800756200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING USING IVM ALGORITHM REMARK 3 AVAILABLE WITHIN XPLOR-NIH (2.10) FOLLOWED BY ENERGY REMARK 3 MINIMIZATION. IVM DYNAMICS (XPLOR-NIH) WITH RESTRAINING TERMS: REMARK 3 NOE, CDIH, JCOUP, RDC AND 7 POSITIONAL RESTRAINTS (APPR. ONE CA REMARK 3 ATOM PER HELIX NEAR THE MIDDLE OF EACH HELIX). REMARK 4 REMARK 4 2JQ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000100147. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 315.7 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] REMARK 210 APOLIPOPROTEIN CIII, 180 MM [U- REMARK 210 2H] SDS, 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCA(CO)NH; HNCACB; HNCO; HNHA; REMARK 210 15N NOESY HSQC; 15N HSQC NOESY REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, TALOS, X-PLOR NIH 2.10, REMARK 210 MONTE_CARLO_SCRIPT, PROTEIN REMARK 210 CONSTRUCTOR REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 51 H SER A 55 1.42 REMARK 500 O ALA A 23 H LEU A 27 1.44 REMARK 500 O THR A 56 H LYS A 60 1.44 REMARK 500 O VAL A 30 H SER A 33 1.52 REMARK 500 O LEU A 50 H TRP A 54 1.53 REMARK 500 OD1 ASP A 52 H TYR A 53 1.54 REMARK 500 O TYR A 15 H ALA A 19 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 8 -1.11 -55.15 REMARK 500 1 LYS A 24 -74.11 -50.90 REMARK 500 1 VAL A 30 0.89 -56.03 REMARK 500 1 GLN A 31 -13.21 -43.91 REMARK 500 1 VAL A 35 -7.73 -46.71 REMARK 500 1 GLN A 37 -38.45 -39.99 REMARK 500 1 ARG A 40 -5.44 -58.03 REMARK 500 1 TRP A 42 -18.17 -43.56 REMARK 500 1 SER A 49 -9.30 -53.33 REMARK 500 1 LYS A 51 -70.89 -55.78 REMARK 500 1 THR A 56 -76.31 -75.68 REMARK 500 1 PHE A 64 -4.95 -58.64 REMARK 500 1 PRO A 69 -11.63 -46.19 REMARK 500 2 ALA A 6 107.05 -54.08 REMARK 500 2 LEU A 8 -0.07 -58.55 REMARK 500 2 LYS A 24 -75.52 -50.87 REMARK 500 2 VAL A 30 1.45 -54.14 REMARK 500 2 GLN A 31 -16.66 -43.29 REMARK 500 2 VAL A 35 -14.52 -41.43 REMARK 500 2 ARG A 40 -4.37 -56.67 REMARK 500 2 TRP A 42 -18.77 -42.11 REMARK 500 2 SER A 49 -15.15 -47.66 REMARK 500 2 THR A 56 -75.86 -78.10 REMARK 500 2 PHE A 64 -7.67 -54.49 REMARK 500 2 PRO A 69 -10.52 -46.60 REMARK 500 3 LEU A 8 0.15 -56.69 REMARK 500 3 LYS A 24 -75.30 -50.23 REMARK 500 3 VAL A 30 0.37 -55.57 REMARK 500 3 GLN A 31 -16.28 -43.07 REMARK 500 3 VAL A 35 -11.65 -43.67 REMARK 500 3 GLN A 37 -39.83 -39.97 REMARK 500 3 ARG A 40 -7.83 -58.22 REMARK 500 3 TRP A 42 -17.68 -46.41 REMARK 500 3 ASP A 45 22.76 -69.40 REMARK 500 3 THR A 56 -77.26 -73.21 REMARK 500 3 PHE A 64 -1.40 -58.41 REMARK 500 3 PRO A 69 -13.24 -45.44 REMARK 500 4 ALA A 3 107.43 -55.34 REMARK 500 4 LEU A 8 -0.18 -57.38 REMARK 500 4 LYS A 24 -74.47 -51.67 REMARK 500 4 VAL A 30 1.75 -54.64 REMARK 500 4 GLN A 31 -16.08 -43.22 REMARK 500 4 VAL A 35 -6.92 -45.94 REMARK 500 4 GLN A 37 -39.23 -39.60 REMARK 500 4 ARG A 40 -5.28 -56.37 REMARK 500 4 PHE A 47 -16.89 -45.42 REMARK 500 4 THR A 56 -75.58 -76.50 REMARK 500 4 PHE A 64 -7.11 -57.84 REMARK 500 4 PRO A 69 -9.96 -45.64 REMARK 500 5 LEU A 8 0.19 -56.93 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15268 RELATED DB: BMRB DBREF 2JQ3 A 1 79 UNP P02656 APOC3_HUMAN 21 99 SEQRES 1 A 79 SER GLU ALA GLU ASP ALA SER LEU LEU SER PHE MET GLN SEQRES 2 A 79 GLY TYR MET LYS HIS ALA THR LYS THR ALA LYS ASP ALA SEQRES 3 A 79 LEU SER SER VAL GLN GLU SER GLN VAL ALA GLN GLN ALA SEQRES 4 A 79 ARG GLY TRP VAL THR ASP GLY PHE SER SER LEU LYS ASP SEQRES 5 A 79 TYR TRP SER THR VAL LYS ASP LYS PHE SER GLU PHE TRP SEQRES 6 A 79 ASP LEU ASP PRO GLU VAL ARG PRO THR SER ALA VAL ALA SEQRES 7 A 79 ALA HELIX 1 1 LEU A 8 THR A 20 1 13 HELIX 2 2 THR A 22 SER A 29 1 8 HELIX 3 3 VAL A 30 GLN A 34 5 5 HELIX 4 4 VAL A 35 VAL A 43 1 9 HELIX 5 5 SER A 48 PHE A 61 1 14 HELIX 6 6 SER A 62 ASP A 66 5 5 HELIX 7 7 ARG A 72 ALA A 79 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1