HEADER METAL BINDING PROTEIN 29-MAY-07 2JQ6 TITLE STRUCTURE OF EH-DOMAIN OF EHD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EH DOMAIN, SEQUENCE DATABASE RESIDUES 401-534; COMPND 5 SYNONYM: TESTILIN, HPAST1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EHD1, PAST, PAST1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX 6P-2 KEYWDS EH DOMAIN, EHD-1, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.P.KIEKEN,M.JOVIC,S.CAPLAN,P.L.SORGEN REVDAT 5 20-DEC-23 2JQ6 1 REMARK REVDAT 4 14-JUN-23 2JQ6 1 REMARK REVDAT 3 19-FEB-20 2JQ6 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JQ6 1 VERSN REVDAT 1 15-APR-08 2JQ6 0 JRNL AUTH F.KIEKEN,M.JOVIC,N.NASLAVSKY,S.CAPLAN,P.L.SORGEN JRNL TITL EH DOMAIN OF EHD1 JRNL REF J.BIOMOL.NMR V. 39 323 2007 JRNL REFN ISSN 0925-2738 JRNL PMID 17899392 JRNL DOI 10.1007/S10858-007-9196-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA AUTOCALIBRATION WITH AUTO REMARK 3 ASSIGNMENT. MINIMIZATION IN WATER TO PREVENT CLOSE CONTACT. REMARK 4 REMARK 4 2JQ6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100150. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] EH REMARK 210 DOMAIN OF EHD-1, 3 MM CA2, 150 REMARK 210 MM PBS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HN(COCA)CB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HNHA; 3D REMARK 210 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB ILE A 67 HD22 ASN A 71 1.23 REMARK 500 OD2 ASP A 49 HH TYR A 53 1.56 REMARK 500 OD2 ASP A 49 HZ1 LYS A 114 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 7 PHE A 57 CE1 PHE A 57 CZ 0.126 REMARK 500 7 PHE A 57 CZ PHE A 57 CE2 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 61 96.65 72.89 REMARK 500 1 LYS A 80 72.07 71.24 REMARK 500 1 LEU A 130 12.78 -149.45 REMARK 500 1 ARG A 136 78.12 -69.57 REMARK 500 2 ALA A 35 117.54 -39.26 REMARK 500 2 SER A 61 81.63 65.48 REMARK 500 2 LYS A 80 73.19 73.49 REMARK 500 2 LYS A 97 73.82 55.71 REMARK 500 2 LEU A 130 18.40 -149.76 REMARK 500 2 PRO A 133 2.62 -68.32 REMARK 500 3 SER A 61 88.59 66.46 REMARK 500 3 LYS A 80 68.22 67.44 REMARK 500 4 PHE A 27 49.03 -87.29 REMARK 500 4 SER A 61 95.21 67.06 REMARK 500 4 LYS A 80 68.09 73.09 REMARK 500 4 PRO A 128 28.41 -68.17 REMARK 500 4 PRO A 132 152.58 -47.80 REMARK 500 5 GLN A 12 59.81 -101.68 REMARK 500 5 VAL A 45 -18.73 -49.96 REMARK 500 5 SER A 61 90.05 64.93 REMARK 500 5 LYS A 80 71.70 72.15 REMARK 500 5 LEU A 130 17.52 -149.06 REMARK 500 6 VAL A 45 -14.21 -45.61 REMARK 500 6 SER A 61 86.90 69.05 REMARK 500 6 SER A 79 3.22 -67.33 REMARK 500 7 SER A 61 95.11 70.12 REMARK 500 7 LYS A 80 67.56 68.04 REMARK 500 7 ALA A 124 19.95 58.81 REMARK 500 7 HIS A 129 30.88 -81.89 REMARK 500 7 ARG A 136 68.62 -110.48 REMARK 500 8 VAL A 45 4.97 -67.74 REMARK 500 8 SER A 61 87.51 67.55 REMARK 500 8 SER A 79 3.93 -67.69 REMARK 500 8 LYS A 80 37.95 74.36 REMARK 500 8 LEU A 130 8.52 -150.29 REMARK 500 9 PRO A 10 -72.02 -52.01 REMARK 500 9 LYS A 15 75.71 -101.07 REMARK 500 9 ASP A 41 104.28 -59.62 REMARK 500 9 SER A 61 85.76 70.90 REMARK 500 9 LYS A 80 39.63 71.91 REMARK 500 9 LYS A 97 73.34 59.66 REMARK 500 10 SER A 61 81.12 65.55 REMARK 500 10 LYS A 80 68.58 65.98 REMARK 500 10 LYS A 97 71.71 60.92 REMARK 500 10 LEU A 130 14.68 -149.61 REMARK 500 10 PRO A 133 0.24 -61.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 141 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 105 OE1 REMARK 620 2 GLU A 105 OE2 48.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 141 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15279 RELATED DB: BMRB DBREF 2JQ6 A 6 139 UNP Q9H4M9 EHD1_HUMAN 401 534 SEQADV 2JQ6 GLY A 1 UNP Q9H4M9 CLONING ARTIFACT SEQADV 2JQ6 PRO A 2 UNP Q9H4M9 CLONING ARTIFACT SEQADV 2JQ6 LEU A 3 UNP Q9H4M9 CLONING ARTIFACT SEQADV 2JQ6 GLY A 4 UNP Q9H4M9 CLONING ARTIFACT SEQADV 2JQ6 SER A 5 UNP Q9H4M9 CLONING ARTIFACT SEQRES 1 A 139 GLY PRO LEU GLY SER GLU SER LEU MET PRO SER GLN VAL SEQRES 2 A 139 VAL LYS GLY GLY ALA PHE ASP GLY THR MET ASN GLY PRO SEQRES 3 A 139 PHE GLY HIS GLY TYR GLY GLU GLY ALA GLY GLU GLY ILE SEQRES 4 A 139 ASP ASP VAL GLU TRP VAL VAL GLY LYS ASP LYS PRO THR SEQRES 5 A 139 TYR ASP GLU ILE PHE TYR THR LEU SER PRO VAL ASN GLY SEQRES 6 A 139 LYS ILE THR GLY ALA ASN ALA LYS LYS GLU MET VAL LYS SEQRES 7 A 139 SER LYS LEU PRO ASN THR VAL LEU GLY LYS ILE TRP LYS SEQRES 8 A 139 LEU ALA ASP VAL ASP LYS ASP GLY LEU LEU ASP ASP GLU SEQRES 9 A 139 GLU PHE ALA LEU ALA ASN HIS LEU ILE LYS VAL LYS LEU SEQRES 10 A 139 GLU GLY HIS GLU LEU PRO ALA ASP LEU PRO PRO HIS LEU SEQRES 11 A 139 VAL PRO PRO SER LYS ARG ARG HIS GLU HET CA A 141 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 TRP A 44 LYS A 48 5 5 HELIX 2 2 ASP A 49 LEU A 60 1 12 HELIX 3 3 GLY A 69 SER A 79 1 11 HELIX 4 4 PRO A 82 ASP A 94 1 13 HELIX 5 5 ASP A 103 GLU A 118 1 16 HELIX 6 6 PRO A 132 ARG A 136 5 5 SHEET 1 A 2 LYS A 66 THR A 68 0 SHEET 2 A 2 LEU A 100 ASP A 102 -1 O LEU A 101 N ILE A 67 LINK OE1 GLU A 105 CA CA A 141 1555 1555 1.74 LINK OE2 GLU A 105 CA CA A 141 1555 1555 2.91 SITE 1 AC1 4 ASP A 94 ASP A 96 LEU A 101 ASP A 102 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1