HEADER SIGNALING PROTEIN 31-MAY-07 2JQE TITLE SOUTION STRUCTURE OF AF54 M-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION 54 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SRP54 M-DOMAIN, RESIDUES 313-433; COMPND 5 SYNONYM: SRP54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: SRP54; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLYSS KEYWDS AF54, SRP54, SOLUTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR U.ILANGOVAN,A.P.HINCK,C.ZWIEB REVDAT 6 20-DEC-23 2JQE 1 REMARK REVDAT 5 14-JUN-23 2JQE 1 REMARK REVDAT 4 19-FEB-20 2JQE 1 SOURCE REMARK SEQADV REVDAT 3 24-FEB-09 2JQE 1 VERSN REVDAT 2 23-SEP-08 2JQE 1 AUTHOR JRNL REVDAT 1 10-JUN-08 2JQE 0 JRNL AUTH U.ILANGOVAN,S.H.BHUIYAN,C.S.HINCK,J.T.HOYLE,O.N.PAKHOMOVA, JRNL AUTH 2 C.ZWIEB,A.P.HINCK JRNL TITL A. FULGIDUS SRP54 M-DOMAIN JRNL REF J.BIOMOL.NMR V. 41 241 2008 JRNL REFN ISSN 0925-2738 JRNL PMID 18618268 JRNL DOI 10.1007/S10858-008-9252-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.0.4, X-PLOR NIH 2.9.6 REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JQE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100158. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-95% 15N] AF54, 95% REMARK 210 H2O/5% D2O; 0.5 MM [U-95% 13C; U- REMARK 210 95% 15N] AF54, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNHA; 3D REMARK 210 HNHB; 3D 1H-15N NOESY; 2D 1H-13C REMARK 210 HSQC; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D HNCO; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, NMRPIPE, NMRDRAW, REMARK 210 X-PLOR NIH 2.9.6 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 307 REMARK 465 SER A 308 REMARK 465 GLY A 309 REMARK 465 THR A 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 315 100.15 37.44 REMARK 500 1 PHE A 316 79.14 44.34 REMARK 500 1 THR A 317 -179.63 -52.39 REMARK 500 1 ASN A 329 -41.24 -175.46 REMARK 500 1 VAL A 334 -79.68 -73.70 REMARK 500 1 MET A 340 152.13 59.63 REMARK 500 1 VAL A 349 -51.52 -162.11 REMARK 500 1 GLN A 358 -78.46 -163.49 REMARK 500 1 SER A 370 -87.01 -73.93 REMARK 500 1 MET A 371 159.04 -31.77 REMARK 500 1 ILE A 381 30.11 -80.19 REMARK 500 1 ILE A 382 100.71 -49.33 REMARK 500 1 THR A 396 -114.29 -90.48 REMARK 500 1 MET A 418 64.59 18.25 REMARK 500 1 LYS A 420 -128.49 43.44 REMARK 500 1 ASN A 421 -43.99 -143.86 REMARK 500 1 LEU A 423 79.01 -161.26 REMARK 500 2 LYS A 313 103.00 51.19 REMARK 500 2 THR A 315 -110.07 44.66 REMARK 500 2 THR A 317 -97.33 44.91 REMARK 500 2 LEU A 318 -11.71 -142.48 REMARK 500 2 MET A 328 171.66 53.94 REMARK 500 2 ASN A 329 -66.66 -97.17 REMARK 500 2 LYS A 330 98.67 51.21 REMARK 500 2 PRO A 333 -85.30 -75.67 REMARK 500 2 VAL A 334 -50.28 -135.49 REMARK 500 2 LYS A 336 114.18 -170.59 REMARK 500 2 PHE A 338 64.32 38.63 REMARK 500 2 GLU A 339 74.41 -103.83 REMARK 500 2 LEU A 345 28.84 -169.86 REMARK 500 2 THR A 357 22.03 47.67 REMARK 500 2 ASP A 383 99.10 -40.79 REMARK 500 2 THR A 396 -107.65 -90.19 REMARK 500 2 MET A 418 100.86 -176.02 REMARK 500 2 LYS A 419 -82.33 -150.17 REMARK 500 2 PRO A 424 -175.09 -69.26 REMARK 500 3 THR A 315 -86.95 -37.32 REMARK 500 3 THR A 317 -146.04 42.76 REMARK 500 3 MET A 328 92.22 51.55 REMARK 500 3 PRO A 342 -166.33 -77.34 REMARK 500 3 PHE A 343 84.63 53.62 REMARK 500 3 LEU A 347 -89.50 -161.00 REMARK 500 3 MET A 354 -84.16 -125.06 REMARK 500 3 MET A 356 -73.47 -71.69 REMARK 500 3 THR A 357 22.47 -160.71 REMARK 500 3 ASP A 383 -87.93 -167.62 REMARK 500 3 SER A 394 29.28 -141.39 REMARK 500 3 THR A 396 -116.04 -152.64 REMARK 500 3 MET A 418 118.61 97.90 REMARK 500 3 LYS A 419 -60.56 -133.95 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 335 0.26 SIDE CHAIN REMARK 500 1 ARG A 365 0.31 SIDE CHAIN REMARK 500 1 ARG A 386 0.22 SIDE CHAIN REMARK 500 1 ARG A 388 0.29 SIDE CHAIN REMARK 500 1 ARG A 389 0.28 SIDE CHAIN REMARK 500 2 ARG A 335 0.32 SIDE CHAIN REMARK 500 2 ARG A 365 0.28 SIDE CHAIN REMARK 500 2 ARG A 386 0.31 SIDE CHAIN REMARK 500 2 ARG A 388 0.32 SIDE CHAIN REMARK 500 2 ARG A 389 0.19 SIDE CHAIN REMARK 500 3 ARG A 335 0.13 SIDE CHAIN REMARK 500 3 ARG A 365 0.30 SIDE CHAIN REMARK 500 3 ARG A 388 0.23 SIDE CHAIN REMARK 500 3 ARG A 389 0.30 SIDE CHAIN REMARK 500 4 ARG A 335 0.22 SIDE CHAIN REMARK 500 4 ARG A 365 0.27 SIDE CHAIN REMARK 500 4 ARG A 386 0.28 SIDE CHAIN REMARK 500 4 ARG A 388 0.23 SIDE CHAIN REMARK 500 4 ARG A 389 0.31 SIDE CHAIN REMARK 500 5 ARG A 335 0.30 SIDE CHAIN REMARK 500 5 ARG A 365 0.29 SIDE CHAIN REMARK 500 5 ARG A 386 0.30 SIDE CHAIN REMARK 500 5 ARG A 388 0.27 SIDE CHAIN REMARK 500 5 ARG A 389 0.28 SIDE CHAIN REMARK 500 6 ARG A 335 0.20 SIDE CHAIN REMARK 500 6 ARG A 365 0.16 SIDE CHAIN REMARK 500 6 ARG A 386 0.32 SIDE CHAIN REMARK 500 6 ARG A 388 0.30 SIDE CHAIN REMARK 500 6 ARG A 389 0.31 SIDE CHAIN REMARK 500 7 ARG A 335 0.31 SIDE CHAIN REMARK 500 7 ARG A 365 0.29 SIDE CHAIN REMARK 500 7 ARG A 386 0.15 SIDE CHAIN REMARK 500 7 ARG A 388 0.31 SIDE CHAIN REMARK 500 7 ARG A 389 0.32 SIDE CHAIN REMARK 500 8 ARG A 335 0.21 SIDE CHAIN REMARK 500 8 ARG A 365 0.29 SIDE CHAIN REMARK 500 8 ARG A 386 0.32 SIDE CHAIN REMARK 500 8 ARG A 388 0.26 SIDE CHAIN REMARK 500 8 ARG A 389 0.28 SIDE CHAIN REMARK 500 9 ARG A 335 0.32 SIDE CHAIN REMARK 500 9 ARG A 365 0.24 SIDE CHAIN REMARK 500 9 ARG A 386 0.31 SIDE CHAIN REMARK 500 9 ARG A 388 0.31 SIDE CHAIN REMARK 500 9 ARG A 389 0.32 SIDE CHAIN REMARK 500 10 ARG A 335 0.25 SIDE CHAIN REMARK 500 10 ARG A 365 0.17 SIDE CHAIN REMARK 500 10 ARG A 386 0.12 SIDE CHAIN REMARK 500 10 ARG A 388 0.31 SIDE CHAIN REMARK 500 10 ARG A 389 0.32 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15275 RELATED DB: BMRB DBREF 2JQE A 313 425 UNP O29633 SRP54_ARCFU 313 425 SEQADV 2JQE GLY A 307 UNP O29633 EXPRESSION TAG SEQADV 2JQE SER A 308 UNP O29633 EXPRESSION TAG SEQADV 2JQE GLY A 309 UNP O29633 EXPRESSION TAG SEQADV 2JQE THR A 310 UNP O29633 EXPRESSION TAG SEQADV 2JQE MET A 311 UNP O29633 EXPRESSION TAG SEQADV 2JQE GLU A 312 UNP O29633 EXPRESSION TAG SEQRES 1 A 119 GLY SER GLY THR MET GLU LYS GLY THR PHE THR LEU LYS SEQRES 2 A 119 ASP ILE TYR LYS GLN ILE GLU ALA MET ASN LYS MET GLY SEQRES 3 A 119 PRO VAL ARG LYS ILE PHE GLU MET LEU PRO PHE GLY LEU SEQRES 4 A 119 GLY LEU LYS VAL ASP ASN ASP VAL MET GLU MET THR GLN SEQRES 5 A 119 GLU LYS MET LYS LYS PHE ARG VAL ILE MET ASP SER MET SEQRES 6 A 119 THR GLU GLU GLU LEU LEU ASN PRO LYS ILE ILE ASP SER SEQRES 7 A 119 SER ARG ILE ARG ARG ILE ALA ILE GLY SER GLY THR SER SEQRES 8 A 119 PRO GLN GLU VAL LYS GLU LEU LEU ASN TYR TYR LYS THR SEQRES 9 A 119 MET LYS ASN LEU MET LYS LYS MET LYS LYS ASN LYS LEU SEQRES 10 A 119 PRO ILE HELIX 1 1 LEU A 318 GLU A 326 1 9 HELIX 2 2 GLU A 359 MET A 371 1 13 HELIX 3 3 THR A 372 ASN A 378 1 7 HELIX 4 4 PRO A 379 ILE A 382 5 4 HELIX 5 5 ASP A 383 GLY A 395 1 13 HELIX 6 6 SER A 397 MET A 415 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1