HEADER VIRAL PROTEIN 01-JUN-07 2JQG TITLE LEADER PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: R; COMPND 4 FRAGMENT: RESIDUES 29-195; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS (STRAIN O1); SOURCE 3 ORGANISM_TAXID: 73482; SOURCE 4 STRAIN: O1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: (DE)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET8C KEYWDS LEADER PROTEASE, C51A MUTANT, DELETION MUTANT, FOOT AND MOUTH DISEASE KEYWDS 2 VIRUS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR R.CENCIC,C.MAYER,M.A.JULIANO,L.JULIANO,R.KONRAT,G.KONTAXIS,T.SKERN REVDAT 8 08-MAY-24 2JQG 1 REMARK REVDAT 7 20-DEC-23 2JQG 1 REMARK REVDAT 6 14-JUN-23 2JQG 1 REMARK REVDAT 5 20-OCT-21 2JQG 1 SEQADV REVDAT 4 19-FEB-20 2JQG 1 REMARK REVDAT 3 24-FEB-09 2JQG 1 VERSN REVDAT 2 06-NOV-07 2JQG 1 JRNL REVDAT 1 24-JUL-07 2JQG 0 JRNL AUTH R.CENCIC,C.MAYER,M.A.JULIANO,L.JULIANO,R.KONRAT,G.KONTAXIS, JRNL AUTH 2 T.SKERN JRNL TITL INVESTIGATING THE SUBSTRATE SPECIFICITY AND OLIGOMERISATION JRNL TITL 2 OF THE LEADER PROTEASE OF FOOT AND MOUTH DISEASE VIRUS USING JRNL TITL 3 NMR JRNL REF J.MOL.BIOL. V. 373 1071 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17897674 JRNL DOI 10.1016/J.JMB.2007.08.061 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMR), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED SIMULATED ANNEALING STARTING REMARK 3 FROM AN EXTENDED COVALENT TEMPLATE REMARK 4 REMARK 4 2JQG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100160. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 SLBPRO, 5 MM DTT, 10 MM SODIUM REMARK 210 AZIDE, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-100% 15N] REMARK 210 SLBPRO, 5 MM DTT, 10 MM SODIUM REMARK 210 AZIDE, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-100% 15N] REMARK 210 SLBPRO, 5 MM DTT, 10 MM SODIUM REMARK 210 AZIDE, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 17 MG/ML REMARK 210 PF1 PHAGE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-15N IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DIRECT DRIVE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, SPARKY, TALOS, REMARK 210 X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA ALA R 152 HA ALA R 161 1.33 REMARK 500 O LEU R 94 H GLY R 97 1.49 REMARK 500 O LEU R 53 H LEU R 57 1.53 REMARK 500 H LEU R 143 O ASP R 176 1.58 REMARK 500 HD21 ASN R 46 OD1 ASN R 47 1.58 REMARK 500 O PRO R 100 N LEU R 102 2.10 REMARK 500 O LEU R 111 N THR R 113 2.12 REMARK 500 O ALA R 101 N VAL R 103 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ALA R 118 N - CA - CB ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN R 46 -120.81 -97.35 REMARK 500 1 HIS R 48 16.98 48.44 REMARK 500 1 ASP R 49 47.65 -146.66 REMARK 500 1 LEU R 57 -72.52 -68.61 REMARK 500 1 GLU R 64 117.18 124.33 REMARK 500 1 GLU R 65 100.32 -44.28 REMARK 500 1 PHE R 67 -17.98 -45.00 REMARK 500 1 PHE R 68 -18.74 -37.52 REMARK 500 1 GLU R 93 122.20 65.44 REMARK 500 1 LEU R 94 12.50 -166.39 REMARK 500 1 PRO R 99 -90.69 -86.13 REMARK 500 1 ALA R 101 61.82 -30.87 REMARK 500 1 LEU R 102 0.74 39.38 REMARK 500 1 LEU R 111 -96.91 -78.49 REMARK 500 1 HIS R 112 74.42 -13.62 REMARK 500 1 VAL R 127 -160.37 -60.68 REMARK 500 1 ASP R 128 -74.91 -96.55 REMARK 500 1 ALA R 139 165.91 166.52 REMARK 500 1 VAL R 154 109.11 -56.50 REMARK 500 1 TRP R 159 101.58 -57.36 REMARK 500 1 ASP R 164 -64.69 -3.45 REMARK 500 1 PRO R 172 32.97 -94.37 REMARK 500 1 PRO R 174 26.20 -75.67 REMARK 500 1 VAL R 179 124.17 -176.61 REMARK 500 1 GLU R 191 94.60 50.84 REMARK 500 2 LEU R 33 -85.04 -17.64 REMARK 500 2 TYR R 34 -56.28 -19.58 REMARK 500 2 GLU R 37 -167.21 -11.68 REMARK 500 2 LYS R 38 92.73 -67.33 REMARK 500 2 HIS R 48 -36.81 178.62 REMARK 500 2 ASP R 49 108.13 157.16 REMARK 500 2 ASN R 50 -25.75 -142.88 REMARK 500 2 GLU R 64 29.29 98.91 REMARK 500 2 PHE R 68 11.34 -62.38 REMARK 500 2 VAL R 71 -75.97 -70.34 REMARK 500 2 GLU R 76 -64.47 -104.84 REMARK 500 2 LEU R 78 -154.83 49.57 REMARK 500 2 GLU R 93 93.77 52.13 REMARK 500 2 HIS R 95 -33.87 -39.31 REMARK 500 2 LYS R 108 -58.99 -29.58 REMARK 500 2 LEU R 111 -111.34 -142.99 REMARK 500 2 HIS R 112 81.14 -19.47 REMARK 500 2 THR R 113 -162.55 -70.12 REMARK 500 2 ASP R 131 -166.88 70.73 REMARK 500 2 LEU R 134 -70.35 -3.76 REMARK 500 2 ALA R 135 3.41 -54.19 REMARK 500 2 ASP R 136 -90.47 -84.98 REMARK 500 2 ALA R 139 161.29 176.96 REMARK 500 2 ASP R 164 65.16 32.82 REMARK 500 2 GLU R 165 8.11 58.75 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG R 44 0.21 SIDE CHAIN REMARK 500 1 ARG R 61 0.18 SIDE CHAIN REMARK 500 1 ARG R 120 0.32 SIDE CHAIN REMARK 500 2 ARG R 44 0.29 SIDE CHAIN REMARK 500 2 ARG R 61 0.23 SIDE CHAIN REMARK 500 2 ARG R 120 0.31 SIDE CHAIN REMARK 500 3 ARG R 44 0.26 SIDE CHAIN REMARK 500 3 ARG R 61 0.21 SIDE CHAIN REMARK 500 3 ARG R 120 0.27 SIDE CHAIN REMARK 500 4 ARG R 44 0.29 SIDE CHAIN REMARK 500 4 ARG R 61 0.18 SIDE CHAIN REMARK 500 4 ARG R 120 0.22 SIDE CHAIN REMARK 500 5 ARG R 44 0.32 SIDE CHAIN REMARK 500 5 ARG R 61 0.26 SIDE CHAIN REMARK 500 5 ARG R 120 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QOL RELATED DB: PDB REMARK 900 RELATED ID: 1QMY RELATED DB: PDB REMARK 900 RELATED ID: 2JQF RELATED DB: PDB REMARK 900 RELATED ID: 15278 RELATED DB: BMRB DBREF 2JQG R 29 195 UNP P03305 POLG_FMDVO 29 195 SEQADV 2JQG ALA R 51 UNP P03305 CYS 51 ENGINEERED MUTATION SEQADV 2JQG VAL R 126 UNP P03305 MET 126 ENGINEERED MUTATION SEQRES 1 R 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 R 167 TYR SER ARG PRO ASN ASN HIS ASP ASN ALA TRP LEU ASN SEQRES 3 R 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 R 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 R 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 R 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 R 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 R 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 R 167 CYS LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 R 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 R 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 R 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 R 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS HELIX 1 1 ASN R 50 GLU R 64 1 15 HELIX 2 2 PHE R 68 SER R 73 1 6 HELIX 3 3 LEU R 78 GLY R 91 1 14 HELIX 4 4 LEU R 102 ILE R 107 1 6 HELIX 5 5 CYS R 133 PHE R 137 5 5 SHEET 1 A 2 GLU R 30 THR R 32 0 SHEET 2 A 2 LYS R 38 THR R 40 -1 O LYS R 39 N LEU R 31 SHEET 1 B 2 ILE R 115 GLY R 116 0 SHEET 2 B 2 VAL R 124 CYS R 125 1 O VAL R 124 N GLY R 116 SHEET 1 C 5 ASP R 166 PRO R 169 0 SHEET 2 C 5 GLY R 158 ASP R 163 -1 N ALA R 161 O TYR R 168 SHEET 3 C 5 ALA R 149 THR R 155 -1 N THR R 155 O GLY R 158 SHEET 4 C 5 ALA R 139 LEU R 143 -1 N PHE R 142 O VAL R 150 SHEET 5 C 5 VAL R 177 PHE R 180 -1 O VAL R 179 N ILE R 141 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1