HEADER CELL CYCLE 02-JUN-07 2JQL TITLE NMR STRUCTURE OF THE YEAST DUN1 FHA DOMAIN IN COMPLEX WITH A DOUBLY TITLE 2 PHOSPHORYLATED (PT) PEPTIDE DERIVED FROM RAD53 SCD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE RESPONSE PROTEIN KINASE DUN1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN KINASE RAD53; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: SERINE-PROTEIN KINASE 1; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 GENE: DUN1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-60; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS PROTEIN/PHOSPHOPEPTIDE, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.YUAN,H.LEE,C.CHANG,J.HEIERHORST,M.TSAI REVDAT 5 20-DEC-23 2JQL 1 REMARK REVDAT 4 09-MAR-22 2JQL 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2JQL 1 VERSN REVDAT 2 01-JUL-08 2JQL 1 JRNL REVDAT 1 24-JUN-08 2JQL 0 JRNL AUTH H.LEE,C.YUAN,A.HAMMET,A.MAHAJAN,E.S.CHEN,M.R.WU,M.I.SU, JRNL AUTH 2 J.HEIERHORST,M.D.TSAI JRNL TITL DIPHOSPHOTHREONINE-SPECIFIC INTERACTION BETWEEN AN SQ/TQ JRNL TITL 2 CLUSTER AND AN FHA DOMAIN IN THE RAD53-DUN1 KINASE CASCADE. JRNL REF MOL.CELL V. 30 767 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18570878 JRNL DOI 10.1016/J.MOLCEL.2008.05.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, F. ET AL. (NMRPIPE), BRUNGER, A.T. ET REMARK 3 AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JQL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100165. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-13C; U-15N] PROTEIN, REMARK 210 0.5 MM PEPTIDE, 5 MM [U-2H] REMARK 210 HEPES, 1 MM DTT, 150 MM NACL, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-13C; U- REMARK 210 15N] PROTEIN, 0.5 MM PEPTIDE, 5 REMARK 210 MM [U-2H] HEPES, 150 MM NACL, 1 REMARK 210 MM DTT, 100% D2O; 0.4 MM [U-13C; REMARK 210 U-15N] PROTEIN, 0.5 MM PEPTIDE, REMARK 210 5 MM HEPES, 150 MM NACL, 1 MM REMARK 210 EDTA, 2 MM DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 13C/15N-FILTERED (F1),13C-EDITED REMARK 210 (F3) NOESY; 3D 13C/15N-FILTERED REMARK 210 (F1), 13C-EDOTED (F3) NOESY; 3D REMARK 210 13C-EDITED (F1), 13C/15N- REMARK 210 FILTERED (F3) NOESY; 2D 13C/15N- REMARK 210 FILTERED (F1,F2) NOESY; 2D 13C/ REMARK 210 15N-FILTERED (F1,F2) TOCSY; 2D REMARK 210 13C/15N-FILTERED (F1,F2) COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 160 REMARK 465 SER A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 24 -179.06 59.25 REMARK 500 1 TYR A 31 -94.23 -57.92 REMARK 500 1 LEU A 34 -58.60 -159.14 REMARK 500 1 LYS A 44 -164.53 172.96 REMARK 500 1 ASN A 54 -35.16 72.07 REMARK 500 1 LEU A 68 -177.69 -67.65 REMARK 500 1 HIS A 77 -65.02 -17.02 REMARK 500 1 ASP A 88 -58.38 74.61 REMARK 500 1 ASN A 89 -40.25 -174.74 REMARK 500 1 SER A 101 99.63 68.47 REMARK 500 1 ARG A 102 -63.06 -168.97 REMARK 500 1 ASP A 116 63.36 -160.52 REMARK 500 1 LYS A 129 -36.45 175.57 REMARK 500 1 CYS A 131 107.14 -56.35 REMARK 500 1 SER A 139 -79.79 63.17 REMARK 500 1 SER A 140 -60.16 -157.69 REMARK 500 1 SER A 141 109.56 -162.52 REMARK 500 1 SER A 153 -46.17 -171.51 REMARK 500 1 GLU A 155 78.08 56.33 REMARK 500 1 SER A 158 32.83 -152.76 REMARK 500 1 PRO B 7 -165.64 -56.08 REMARK 500 2 GLN A 21 -43.73 -148.12 REMARK 500 2 SER A 29 -54.02 -178.12 REMARK 500 2 TYR A 31 -123.09 -122.65 REMARK 500 2 LEU A 34 -45.78 -138.04 REMARK 500 2 LYS A 44 -168.08 176.32 REMARK 500 2 ASN A 54 -35.68 71.81 REMARK 500 2 SER A 69 -69.45 67.52 REMARK 500 2 GLU A 70 -64.63 98.73 REMARK 500 2 HIS A 77 -70.99 -27.15 REMARK 500 2 LYS A 100 31.15 -143.69 REMARK 500 2 LYS A 115 -169.79 46.47 REMARK 500 2 LYS A 129 -37.17 171.74 REMARK 500 2 CYS A 131 104.32 -53.17 REMARK 500 2 SER A 139 -48.95 -144.04 REMARK 500 2 SER A 142 -44.17 -164.58 REMARK 500 2 GLU A 146 32.56 -159.64 REMARK 500 2 ASN A 147 -47.62 -145.15 REMARK 500 2 GLU A 150 -67.16 -148.95 REMARK 500 2 SER A 156 101.70 60.33 REMARK 500 2 SER A 158 31.52 -145.78 REMARK 500 2 PRO B 7 -166.34 -59.48 REMARK 500 3 ARG A 23 177.64 60.19 REMARK 500 3 SER A 28 95.77 -67.39 REMARK 500 3 TYR A 31 120.15 62.53 REMARK 500 3 PRO A 42 90.02 -52.11 REMARK 500 3 LYS A 44 176.94 179.46 REMARK 500 3 ASN A 54 -36.87 71.66 REMARK 500 3 SER A 61 150.21 -47.14 REMARK 500 3 HIS A 77 -68.87 -24.37 REMARK 500 REMARK 500 THIS ENTRY HAS 464 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JQI RELATED DB: PDB REMARK 900 RELATED ID: 2JQJ RELATED DB: PDB DBREF 2JQL A 19 159 UNP P39009 DUN1_YEAST 19 159 DBREF 2JQL B 3 12 UNP P22216 RAD53_YEAST 3 12 SEQADV 2JQL MET A 17 UNP P39009 EXPRESSION TAG SEQADV 2JQL ALA A 18 UNP P39009 EXPRESSION TAG SEQADV 2JQL ARG A 160 UNP P39009 EXPRESSION TAG SEQADV 2JQL SER A 161 UNP P39009 EXPRESSION TAG SEQADV 2JQL HIS A 162 UNP P39009 EXPRESSION TAG SEQADV 2JQL HIS A 163 UNP P39009 EXPRESSION TAG SEQADV 2JQL HIS A 164 UNP P39009 EXPRESSION TAG SEQADV 2JQL HIS A 165 UNP P39009 EXPRESSION TAG SEQADV 2JQL HIS A 166 UNP P39009 EXPRESSION TAG SEQADV 2JQL HIS A 167 UNP P39009 EXPRESSION TAG SEQADV 2JQL TPO B 5 UNP P22216 THR 5 MODIFIED RESIDUE SEQADV 2JQL TPO B 8 UNP P22216 THR 8 MODIFIED RESIDUE SEQRES 1 A 151 MET ALA LYS ARG GLN GLN ARG SER ASN LYS PRO SER SER SEQRES 2 A 151 GLU TYR THR CYS LEU GLY HIS LEU VAL ASN LEU ILE PRO SEQRES 3 A 151 GLY LYS GLU GLN LYS VAL GLU ILE THR ASN ARG ASN VAL SEQRES 4 A 151 THR THR ILE GLY ARG SER ARG SER CYS ASP VAL ILE LEU SEQRES 5 A 151 SER GLU PRO ASP ILE SER THR PHE HIS ALA GLU PHE HIS SEQRES 6 A 151 LEU LEU GLN MET ASP VAL ASP ASN PHE GLN ARG ASN LEU SEQRES 7 A 151 ILE ASN VAL ILE ASP LYS SER ARG ASN GLY THR PHE ILE SEQRES 8 A 151 ASN GLY ASN ARG LEU VAL LYS LYS ASP TYR ILE LEU LYS SEQRES 9 A 151 ASN GLY ASP ARG ILE VAL PHE GLY LYS SER CYS SER PHE SEQRES 10 A 151 LEU PHE LYS TYR ALA SER SER SER SER THR ASP ILE GLU SEQRES 11 A 151 ASN ASP ASP GLU LYS VAL SER SER GLU SER ARG SER TYR SEQRES 12 A 151 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 10 ASN ILE TPO GLN PRO TPO GLN GLN SER THR MODRES 2JQL TPO B 5 THR PHOSPHOTHREONINE MODRES 2JQL TPO B 8 THR PHOSPHOTHREONINE HET TPO B 5 17 HET TPO B 8 17 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO 2(C4 H10 N O6 P) SHEET 1 A 6 LYS A 44 THR A 51 0 SHEET 2 A 6 CYS A 33 ILE A 41 -1 N GLY A 35 O ILE A 50 SHEET 3 A 6 CYS A 131 TYR A 137 -1 O LEU A 134 N VAL A 38 SHEET 4 A 6 ASP A 123 PHE A 127 -1 N ILE A 125 O PHE A 133 SHEET 5 A 6 THR A 105 ILE A 107 -1 N PHE A 106 O VAL A 126 SHEET 6 A 6 ASN A 110 ARG A 111 -1 O ASN A 110 N ILE A 107 SHEET 1 B 5 VAL A 66 ILE A 67 0 SHEET 2 B 5 THR A 56 GLY A 59 1 N THR A 57 O VAL A 66 SHEET 3 B 5 ALA A 78 VAL A 87 -1 O PHE A 80 N THR A 56 SHEET 4 B 5 PHE A 90 ASP A 99 -1 O ARG A 92 N MET A 85 SHEET 5 B 5 TYR A 117 LEU A 119 -1 O LEU A 119 N ILE A 95 LINK C ILE B 4 N TPO B 5 1555 1555 1.33 LINK C TPO B 5 N GLN B 6 1555 1555 1.33 LINK C PRO B 7 N TPO B 8 1555 1555 1.33 LINK C TPO B 8 N GLN B 9 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1