HEADER PROTEIN TRANSPORT 06-JUN-07 2JQQ TITLE SOLUTION STRUCTURE OF SACCHAROMYCES CEREVISIAE CONSERVED OLIGOMERIC TITLE 2 GOLGI SUBUNIT 2 PROTEIN (COG2P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 61-262; COMPND 5 SYNONYM: COG COMPLEX SUBUNIT 2, PROTEIN SEC35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: COG2, SEC35; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-4T1 KEYWDS PROTEIN, HELICAL BUNDLE, VESICULAR TRANSPORT, TETHERING, PROTEIN KEYWDS 2 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.F.CAVANAUGH,X.CHEN,I.PELCZER,J.RIZO,F.M.HUGHSON REVDAT 7 20-DEC-23 2JQQ 1 REMARK REVDAT 6 14-JUN-23 2JQQ 1 REMARK REVDAT 5 19-FEB-20 2JQQ 1 REMARK SEQADV REVDAT 4 24-FEB-09 2JQQ 1 VERSN REVDAT 3 04-SEP-07 2JQQ 1 JRNL REVDAT 2 26-JUN-07 2JQQ 1 REMARK REVDAT 1 19-JUN-07 2JQQ 0 JRNL AUTH L.F.CAVANAUGH,X.CHEN,B.C.RICHARDSON,D.UNGAR,I.PELCZER, JRNL AUTH 2 J.RIZO,F.M.HUGHSON JRNL TITL STRUCTURAL ANALYSIS OF CONSERVED OLIGOMERIC GOLGI COMPLEX JRNL TITL 2 SUBUNIT 2 JRNL REF J.BIOL.CHEM. V. 282 23418 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17565980 JRNL DOI 10.1074/JBC.M703716200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1, AQUA, PROCHECKNMR REMARK 3 AUTHORS : A BRUNGER, P ADAMS, M CLORE, P GROS, M NILGES AND REMARK 3 R READ (CNS), A BRUNGER, P ADAMS, M CLORE, P GROS, REMARK 3 M NILGES AND R READ (CNS), T RULLMANN, JF REMARK 3 DORELEIJERS AND R KAPTEIN (AQUA), RA LASKOWSKI AND REMARK 3 M MACARTHUR (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JQQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100170. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 COG2P, 3 MM TRIS, 50 UM EDTA, 10 REMARK 210 MM SODIUM CHLORIDE, 0.0025 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 COG2P, 3 MM TRIS, 50 UM EDTA, 10 REMARK 210 MM SODIUM CHLORIDE, 0.0025 % REMARK 210 SODIUM AZIDE, 100% D2O; 1 MM [U- REMARK 210 100% 13C; U-100% 15N] COG2P, 3 REMARK 210 MM TRIS, 50 UM EDTA, 10 MM REMARK 210 SODIUM CHLORIDE, 0.0025 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 2D DQF-COSY; 2D 1H- REMARK 210 15N HSQC; 3D HCCH-TOCSY; 3D C(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-13C CT-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, TALOS, XWINNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: EXPERIMENTS COLLECTED AT THE EMSL AT PNNL. RESIDUES 59-108 REMARK 210 WERE PRESENT IN THE COG2 PROTEIN USED IN THIS NMR STUDY; HOWEVER REMARK 210 A LACK OF LONG-RANGE CONTACTS PREVENTED THE INCLUSION OF THESE REMARK 210 RESIDUES IN THE FINAL MODELS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 LEU A 63 REMARK 465 ILE A 64 REMARK 465 ARG A 65 REMARK 465 ASP A 66 REMARK 465 LEU A 67 REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 LEU A 70 REMARK 465 SER A 71 REMARK 465 GLN A 72 REMARK 465 LYS A 73 REMARK 465 MET A 74 REMARK 465 VAL A 75 REMARK 465 GLN A 76 REMARK 465 THR A 77 REMARK 465 LEU A 78 REMARK 465 LEU A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 ILE A 82 REMARK 465 ARG A 83 REMARK 465 SER A 84 REMARK 465 ASN A 85 REMARK 465 TYR A 86 REMARK 465 ASP A 87 REMARK 465 ASP A 88 REMARK 465 TYR A 89 REMARK 465 LEU A 90 REMARK 465 THR A 91 REMARK 465 PHE A 92 REMARK 465 SER A 93 REMARK 465 ASN A 94 REMARK 465 THR A 95 REMARK 465 TYR A 96 REMARK 465 THR A 97 REMARK 465 ASP A 98 REMARK 465 GLU A 99 REMARK 465 GLU A 100 REMARK 465 ASN A 101 REMARK 465 GLU A 102 REMARK 465 THR A 103 REMARK 465 LEU A 104 REMARK 465 ILE A 105 REMARK 465 ASN A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 165 H LEU A 169 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 128 -77.92 -99.71 REMARK 500 1 ILE A 129 -165.01 -114.13 REMARK 500 1 SER A 130 -46.50 -148.47 REMARK 500 1 SER A 157 -43.47 -164.20 REMARK 500 1 ILE A 179 136.27 179.40 REMARK 500 1 GLU A 180 172.38 59.45 REMARK 500 1 PRO A 181 154.19 -49.73 REMARK 500 1 ALA A 209 -171.19 68.60 REMARK 500 1 ASP A 210 -79.92 -58.61 REMARK 500 1 SER A 211 -174.43 52.00 REMARK 500 2 ASP A 128 -79.02 -104.88 REMARK 500 2 ILE A 129 -169.48 -111.62 REMARK 500 2 SER A 130 -43.55 -147.76 REMARK 500 2 SER A 157 -34.72 176.19 REMARK 500 2 ILE A 179 -45.20 -135.19 REMARK 500 2 ALA A 209 -179.70 -59.01 REMARK 500 2 ASP A 210 -43.84 -169.66 REMARK 500 2 SER A 211 -43.49 -167.88 REMARK 500 2 ASN A 212 81.61 -175.59 REMARK 500 2 LYS A 260 35.76 -171.38 REMARK 500 3 ASP A 128 -70.68 -103.09 REMARK 500 3 ILE A 129 -164.91 -111.71 REMARK 500 3 SER A 130 -45.60 -151.80 REMARK 500 3 ASN A 155 -165.17 -76.23 REMARK 500 3 SER A 157 33.97 -162.79 REMARK 500 3 ILE A 179 -45.92 -136.37 REMARK 500 3 PRO A 181 157.64 -46.29 REMARK 500 3 ASP A 210 -40.76 -175.01 REMARK 500 3 ASN A 244 79.49 -119.61 REMARK 500 3 LEU A 248 71.32 61.73 REMARK 500 3 LYS A 260 -178.15 -66.27 REMARK 500 3 THR A 261 98.14 60.71 REMARK 500 4 ASP A 128 -65.89 -130.32 REMARK 500 4 ILE A 129 -163.88 -105.43 REMARK 500 4 SER A 130 -43.40 -165.63 REMARK 500 4 ARG A 154 -71.78 -171.79 REMARK 500 4 ASN A 155 -178.25 -62.62 REMARK 500 4 ILE A 179 -76.73 -131.65 REMARK 500 4 PRO A 181 151.99 -47.04 REMARK 500 4 ALA A 209 -178.23 59.25 REMARK 500 4 ASP A 210 156.03 61.09 REMARK 500 4 ASN A 212 -46.64 -154.46 REMARK 500 5 ASP A 128 -75.84 -101.29 REMARK 500 5 ILE A 129 -166.56 -109.78 REMARK 500 5 SER A 130 -46.03 -150.44 REMARK 500 5 SER A 157 -42.49 -146.81 REMARK 500 5 ILE A 179 -63.01 -135.65 REMARK 500 5 GLU A 180 -67.47 -158.88 REMARK 500 5 ALA A 209 -76.68 -57.08 REMARK 500 5 ASP A 210 -77.72 65.06 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15290 RELATED DB: BMRB DBREF 2JQQ A 61 262 UNP P53271 COG2_YEAST 61 262 SEQADV 2JQQ GLY A 59 UNP P53271 CLONING ARTIFACT SEQADV 2JQQ SER A 60 UNP P53271 CLONING ARTIFACT SEQRES 1 A 204 GLY SER ASP SER LEU ILE ARG ASP LEU SER GLY LEU SER SEQRES 2 A 204 GLN LYS MET VAL GLN THR LEU LEU GLU GLN ILE ARG SER SEQRES 3 A 204 ASN TYR ASP ASP TYR LEU THR PHE SER ASN THR TYR THR SEQRES 4 A 204 ASP GLU GLU ASN GLU THR LEU ILE ASN LEU GLU LYS THR SEQRES 5 A 204 GLN SER ASP LEU GLN LYS PHE MET THR GLN LEU ASP HIS SEQRES 6 A 204 LEU ILE LYS ASP ASP ILE SER ASN THR GLN GLU ILE ILE SEQRES 7 A 204 LYS ASP VAL LEU GLU TYR LEU LYS LYS LEU ASP GLU ILE SEQRES 8 A 204 TYR GLY SER LEU ARG ASN HIS SER GLN LEU THR GLU ALA SEQRES 9 A 204 LEU SER LEU GLY LYS ARG LEU SER LYS SER LEU HIS GLU SEQRES 10 A 204 MET CYS GLY ILE GLU PRO LEU GLU GLU GLU ILE CYS SER SEQRES 11 A 204 GLY LEU ILE GLU GLN LEU TYR LYS LEU ILE THR ALA SER SEQRES 12 A 204 ARG ARG ILE LEU GLU SER CYS ALA ASP SER ASN SER PRO SEQRES 13 A 204 TYR ILE HIS HIS LEU ARG ASN ASP TYR GLN ASP LEU LEU SEQRES 14 A 204 GLN GLU PHE GLN ILE SER LEU LYS ILE LEU THR GLU LYS SEQRES 15 A 204 CYS LEU GLU ASN PRO SER SER LEU GLN ASN LEU SER LEU SEQRES 16 A 204 THR LEU VAL SER ILE ILE LYS THR ALA HELIX 1 1 LYS A 109 ASP A 128 1 20 HELIX 2 2 THR A 132 SER A 152 1 21 HELIX 3 3 SER A 157 GLY A 178 1 22 HELIX 4 4 GLU A 183 ALA A 209 1 27 HELIX 5 5 SER A 213 ASN A 244 1 32 HELIX 6 6 LEU A 248 ILE A 259 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1