HEADER STRUCTURAL GENOMICS 07-JUN-07 2JQV TITLE SOLUTION STRUCTURE AT3G28950.1 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AIG2 PROTEIN-LIKE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AT3G28950; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G28950.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP13 KEYWDS AT3G28950.1, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.F.VOLKMAN,N.B.DE LA CRUZ,F.C.PETERSON,CENTER FOR EUKARYOTIC AUTHOR 2 STRUCTURAL GENOMICS (CESG) REVDAT 5 20-DEC-23 2JQV 1 REMARK REVDAT 4 09-MAR-22 2JQV 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JQV 1 VERSN REVDAT 2 08-JUL-08 2JQV 1 JRNL REVDAT 1 14-AUG-07 2JQV 0 JRNL AUTH N.B.DE LA CRUZ,F.C.PETERSON,B.F.VOLKMAN JRNL TITL SOLUTION STRUCTURE OF AT3G28950 FROM ARABIDOPSIS THALIANA. JRNL REF PROTEINS V. 71 546 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18214976 JRNL DOI 10.1002/PROT.21936 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS, C.D. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 1810 REMARK 3 NOE CONSTRAINTS (506 INTRA, 317 SEQUENTIAL, 319 MEDIUM AND 668 REMARK 3 LONG RANGE CONSTRAINTS) AND 189 PHI AND PSI DIHEDRAL ANGLE REMARK 3 CONSTRAINTS. REMARK 4 REMARK 4 2JQV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100175. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2004, XEASY REMARK 210 1.3, SPSCAN 1.1.0, GARANT 2.1, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 -177.22 -62.85 REMARK 500 1 GLN A 7 77.96 68.34 REMARK 500 1 SER A 16 -72.31 -44.75 REMARK 500 1 ILE A 17 66.55 -105.67 REMARK 500 1 ASP A 28 -33.57 150.39 REMARK 500 1 LEU A 46 77.34 57.23 REMARK 500 1 PRO A 50 87.87 -68.27 REMARK 500 1 TYR A 51 54.83 33.42 REMARK 500 1 SER A 56 129.94 71.04 REMARK 500 1 GLU A 82 -26.78 75.87 REMARK 500 1 ARG A 95 94.58 -66.72 REMARK 500 1 ASN A 147 82.14 64.01 REMARK 500 1 SER A 162 78.38 61.61 REMARK 500 2 GLN A 7 38.98 -140.34 REMARK 500 2 ILE A 17 -84.69 -144.43 REMARK 500 2 LEU A 18 -42.32 50.89 REMARK 500 2 LEU A 46 158.27 62.75 REMARK 500 2 LYS A 47 -51.25 -128.41 REMARK 500 2 PRO A 50 -157.69 -62.68 REMARK 500 2 PRO A 52 168.35 -39.74 REMARK 500 2 SER A 57 -66.02 -144.10 REMARK 500 2 ILE A 81 -74.82 -44.40 REMARK 500 2 GLU A 82 19.55 -141.77 REMARK 500 2 LYS A 112 -15.39 -47.75 REMARK 500 2 MET A 117 148.05 67.81 REMARK 500 2 TRP A 121 86.97 -158.73 REMARK 500 2 SER A 163 124.64 -171.27 REMARK 500 3 SER A 4 89.38 61.20 REMARK 500 3 GLN A 7 84.65 62.58 REMARK 500 3 SER A 16 -82.59 -162.60 REMARK 500 3 ASP A 28 -5.00 75.84 REMARK 500 3 TYR A 44 -169.99 -121.54 REMARK 500 3 LEU A 46 -178.02 64.06 REMARK 500 3 TYR A 51 60.66 39.78 REMARK 500 3 SER A 56 102.43 50.96 REMARK 500 3 ASP A 85 21.55 -141.05 REMARK 500 3 LYS A 112 -15.66 -48.94 REMARK 500 3 MET A 117 129.47 74.07 REMARK 500 3 TRP A 121 109.70 79.82 REMARK 500 3 ASN A 147 72.41 46.19 REMARK 500 3 VAL A 157 108.79 -57.27 REMARK 500 3 LEU A 160 150.83 179.29 REMARK 500 3 SER A 163 144.37 64.83 REMARK 500 4 SER A 16 -73.59 67.50 REMARK 500 4 SER A 56 164.43 174.57 REMARK 500 4 ARG A 95 98.58 -65.43 REMARK 500 4 MET A 117 27.81 -153.14 REMARK 500 4 TRP A 121 -159.45 85.83 REMARK 500 4 VAL A 157 114.55 58.16 REMARK 500 5 ASP A 5 -61.74 -93.79 REMARK 500 REMARK 500 THIS ENTRY HAS 208 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 29 0.09 SIDE CHAIN REMARK 500 4 ARG A 95 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.16211 RELATED DB: TARGETDB DBREF 2JQV A 2 165 UNP Q9MBH1 Q9MBH1_ARATH 2 165 SEQADV 2JQV SER A 1 UNP Q9MBH1 CLONING ARTIFACT SEQRES 1 A 165 SER THR SER SER ASP PRO GLN SER HIS ASN VAL PHE VAL SEQRES 2 A 165 TYR GLY SER ILE LEU GLU PRO ALA VAL ALA ALA VAL ILE SEQRES 3 A 165 LEU ASP ARG THR ALA ASP THR VAL PRO ALA VAL LEU HIS SEQRES 4 A 165 GLY TYR HIS ARG TYR LYS LEU LYS GLY LEU PRO TYR PRO SEQRES 5 A 165 CYS ILE VAL SER SER ASP SER GLY LYS VAL ASN GLY LYS SEQRES 6 A 165 VAL ILE THR GLY VAL SER ASP ALA GLU LEU ASN ASN PHE SEQRES 7 A 165 ASP VAL ILE GLU GLY ASN ASP TYR GLU ARG VAL THR VAL SEQRES 8 A 165 GLU VAL VAL ARG MET ASP ASN SER GLU LYS VAL LYS VAL SEQRES 9 A 165 GLU THR TYR VAL TRP VAL ASN LYS ASP ASP PRO ARG MET SEQRES 10 A 165 TYR GLY GLU TRP ASP PHE GLU GLU TRP ARG VAL VAL HIS SEQRES 11 A 165 ALA GLU LYS PHE VAL GLU THR PHE ARG LYS MET LEU GLU SEQRES 12 A 165 TRP ASN LYS ASN PRO ASN GLY LYS SER MET GLU GLU ALA SEQRES 13 A 165 VAL GLY SER LEU LEU SER SER GLY ASP HELIX 1 1 GLU A 19 LEU A 27 1 9 HELIX 2 2 SER A 71 ILE A 81 1 11 HELIX 3 3 ASP A 122 ASN A 147 1 26 HELIX 4 4 SER A 152 VAL A 157 1 6 SHEET 1 A 6 HIS A 9 VAL A 13 0 SHEET 2 A 6 LYS A 61 VAL A 70 -1 O ILE A 67 N VAL A 11 SHEET 3 A 6 ASP A 32 HIS A 39 -1 N LEU A 38 O VAL A 62 SHEET 4 A 6 TYR A 86 ARG A 95 -1 O VAL A 94 N VAL A 37 SHEET 5 A 6 LYS A 101 TRP A 109 -1 O VAL A 102 N VAL A 93 SHEET 6 A 6 HIS A 9 VAL A 13 1 N PHE A 12 O GLU A 105 SHEET 1 B 2 HIS A 42 ARG A 43 0 SHEET 2 B 2 ILE A 54 VAL A 55 -1 O VAL A 55 N HIS A 42 CISPEP 1 PRO A 52 CYS A 53 1 -0.83 CISPEP 2 PRO A 52 CYS A 53 2 11.85 CISPEP 3 PRO A 52 CYS A 53 3 -13.11 CISPEP 4 PRO A 52 CYS A 53 4 -4.35 CISPEP 5 PRO A 52 CYS A 53 5 -15.74 CISPEP 6 PRO A 52 CYS A 53 6 5.65 CISPEP 7 PRO A 52 CYS A 53 7 10.01 CISPEP 8 PRO A 52 CYS A 53 8 -11.88 CISPEP 9 PRO A 52 CYS A 53 9 -17.45 CISPEP 10 PRO A 52 CYS A 53 10 -3.11 CISPEP 11 PRO A 52 CYS A 53 11 -8.39 CISPEP 12 PRO A 52 CYS A 53 12 9.08 CISPEP 13 PRO A 52 CYS A 53 13 -18.04 CISPEP 14 PRO A 52 CYS A 53 14 8.41 CISPEP 15 PRO A 52 CYS A 53 15 -19.07 CISPEP 16 PRO A 52 CYS A 53 16 -4.68 CISPEP 17 PRO A 52 CYS A 53 17 -3.30 CISPEP 18 PRO A 52 CYS A 53 18 -6.79 CISPEP 19 PRO A 52 CYS A 53 19 -13.22 CISPEP 20 PRO A 52 CYS A 53 20 10.88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1