HEADER METAL BINDING PROTEIN 21-JUN-07 2JR7 TITLE SOLUTION STRUCTURE OF HUMAN DESR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DPH3 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSL-TYPE ZINC FINGER-CONTAINING PROTEIN 2, DELGEF- COMPND 5 INTERACTING PROTEIN 1, DELGIP1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPH3, DESR1, ZCSL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B (+) KEYWDS DESR1, CSL ZINC FINGER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.WU,J.WU,Y.SHI REVDAT 7 08-MAY-24 2JR7 1 REMARK REVDAT 6 20-DEC-23 2JR7 1 REMARK REVDAT 5 14-JUN-23 2JR7 1 REMARK REVDAT 4 20-OCT-21 2JR7 1 REMARK SEQADV REVDAT 3 19-FEB-20 2JR7 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JR7 1 VERSN REVDAT 1 25-MAR-08 2JR7 0 JRNL AUTH F.WU,J.ZHANG,J.SUN,H.HUANG,P.JI,W.CHU,M.YU,F.YANG,Z.WU,J.WU, JRNL AUTH 2 Y.SHI JRNL TITL SOLUTION STRUCTURE OF HUMAN DESR1, A CSL ZINC-BINDING JRNL TITL 2 PROTEIN JRNL REF PROTEINS V. 71 514 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18214955 JRNL DOI 10.1002/PROT.21915 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JR7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100187. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM TRIS, 50 MM REMARK 210 SODIUM CHLORIDE, 14 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM TRIS, 50 MM REMARK 210 SODIUM CHLORIDE, 14 MM BETA- REMARK 210 MERCAPTOETHANOL, 99.99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, SPARKY 3, CSI 1.0, REMARK 210 MOLMOL 2K.2, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 HIS A 89 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -50.26 -132.30 REMARK 500 1 PHE A 4 175.54 60.23 REMARK 500 1 HIS A 5 -63.51 -91.01 REMARK 500 1 ASP A 6 137.28 -170.51 REMARK 500 1 SER A 19 32.75 -149.11 REMARK 500 1 GLU A 20 73.49 50.25 REMARK 500 1 GLU A 43 79.22 -67.85 REMARK 500 1 ASP A 44 39.39 -96.34 REMARK 500 1 SER A 50 -68.03 -109.84 REMARK 500 1 PRO A 71 174.83 -59.90 REMARK 500 1 ALA A 75 -179.72 62.35 REMARK 500 1 LYS A 81 35.11 -141.86 REMARK 500 2 ALA A 2 -58.60 -127.52 REMARK 500 2 SER A 19 27.73 -142.87 REMARK 500 2 ASP A 44 35.83 -89.66 REMARK 500 2 GLU A 68 31.81 -99.81 REMARK 500 2 VAL A 70 141.88 67.55 REMARK 500 2 ALA A 75 160.27 67.58 REMARK 500 2 LEU A 79 34.70 -150.79 REMARK 500 2 LYS A 81 85.44 59.73 REMARK 500 3 SER A 19 28.23 -148.83 REMARK 500 3 GLU A 20 82.28 53.74 REMARK 500 3 ASP A 44 41.92 -97.33 REMARK 500 3 SER A 50 -75.39 -83.02 REMARK 500 3 PRO A 73 172.38 -58.94 REMARK 500 3 LEU A 79 128.57 -172.85 REMARK 500 4 ALA A 2 -70.43 -131.47 REMARK 500 4 VAL A 3 26.36 -146.51 REMARK 500 4 SER A 19 32.39 -151.44 REMARK 500 4 GLU A 20 70.49 51.65 REMARK 500 4 ASN A 31 131.50 73.37 REMARK 500 4 GLU A 43 80.22 -68.02 REMARK 500 4 ASP A 44 38.72 -95.05 REMARK 500 4 PRO A 49 36.62 -84.60 REMARK 500 4 SER A 50 -64.11 -155.51 REMARK 500 4 SER A 66 28.36 -141.36 REMARK 500 4 PRO A 71 172.30 -57.85 REMARK 500 4 ALA A 75 100.72 66.59 REMARK 500 4 ASN A 76 38.71 -95.00 REMARK 500 4 LEU A 79 63.67 -154.84 REMARK 500 4 LYS A 81 92.54 60.71 REMARK 500 5 ASP A 30 -167.25 -79.35 REMARK 500 5 ASP A 44 41.78 -97.66 REMARK 500 5 LEU A 79 40.59 -163.35 REMARK 500 5 LYS A 81 25.79 -145.70 REMARK 500 5 LEU A 82 152.36 69.00 REMARK 500 6 ALA A 2 -66.00 -168.96 REMARK 500 6 PHE A 4 -179.95 60.35 REMARK 500 6 HIS A 5 -61.63 -97.28 REMARK 500 6 ASP A 44 41.79 -97.44 REMARK 500 REMARK 500 THIS ENTRY HAS 192 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 85 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 28 SG 109.0 REMARK 620 3 CYS A 48 SG 110.0 110.8 REMARK 620 4 CYS A 51 SG 108.8 109.1 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 85 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15377 RELATED DB: BMRB DBREF 2JR7 A 1 81 UNP Q96FX2 DPH3_HUMAN 1 81 SEQADV 2JR7 SER A 66 UNP Q96FX2 CYS 66 ENGINEERED MUTATION SEQADV 2JR7 LEU A 82 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 GLU A 83 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 84 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 85 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 86 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 87 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 88 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 89 UNP Q96FX2 EXPRESSION TAG SEQRES 1 A 89 MET ALA VAL PHE HIS ASP GLU VAL GLU ILE GLU ASP PHE SEQRES 2 A 89 GLN TYR ASP GLU ASP SER GLU THR TYR PHE TYR PRO CYS SEQRES 3 A 89 PRO CYS GLY ASP ASN PHE SER ILE THR LYS GLU ASP LEU SEQRES 4 A 89 GLU ASN GLY GLU ASP VAL ALA THR CYS PRO SER CYS SER SEQRES 5 A 89 LEU ILE ILE LYS VAL ILE TYR ASP LYS ASP GLN PHE VAL SEQRES 6 A 89 SER GLY GLU THR VAL PRO ALA PRO SER ALA ASN LYS GLU SEQRES 7 A 89 LEU VAL LYS LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 85 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 LYS A 36 GLY A 42 1 7 HELIX 2 2 ASP A 60 VAL A 65 1 6 SHEET 1 A 3 GLU A 7 GLU A 9 0 SHEET 2 A 3 ILE A 54 ILE A 58 1 O LYS A 56 N VAL A 8 SHEET 3 A 3 VAL A 45 THR A 47 -1 N ALA A 46 O ILE A 55 SHEET 1 B 3 GLN A 14 TYR A 15 0 SHEET 2 B 3 THR A 21 PRO A 25 -1 O PHE A 23 N GLN A 14 SHEET 3 B 3 ASN A 31 THR A 35 -1 O ILE A 34 N TYR A 22 LINK SG CYS A 26 ZN ZN A 85 1555 1555 2.42 LINK SG CYS A 28 ZN ZN A 85 1555 1555 2.40 LINK SG CYS A 48 ZN ZN A 85 1555 1555 2.40 LINK SG CYS A 51 ZN ZN A 85 1555 1555 2.42 SITE 1 AC1 4 CYS A 26 CYS A 28 CYS A 48 CYS A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1