HEADER DE NOVO PROTEIN 25-JUN-07 2JRE TITLE C60-1, A PDZ DOMAIN DESIGNED USING STATISTICAL COUPLING ANALYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C60-1 PDZ DOMAIN PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE IS A SYNTHETIC CONSTRUCT DESIGNED USING SOURCE 4 STATISTICAL COUPLING ANALYSIS AND EXPRESSED IN ESCHERICHIA COLI BL21 SOURCE 5 CELLS USING THE PHIS8.3 VECTOR. KEYWDS C60-1, PDZ, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR C.LARSON,M.STIFFLER,P.LI,M.ROSEN,G.MACBEATH,R.RANGANATHAN REVDAT 4 20-DEC-23 2JRE 1 REMARK REVDAT 3 09-MAR-22 2JRE 1 REMARK REVDAT 2 24-FEB-09 2JRE 1 VERSN REVDAT 1 01-JUL-08 2JRE 0 JRNL AUTH C.LARSON,M.STIFFLER,P.LI,M.ROSEN,G.MACBEATH,R.RANGANATHAN JRNL TITL C60-1, A PDZ DOMAIN DESIGNED USING STATISTICAL COUPLING JRNL TITL 2 ANALYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100194. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 50 MM SODIUM CHLORIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 50 MM SODIUM CHLORIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 100% D2O; 1 MM [U- REMARK 210 10% 13C] PROTEIN, 50 MM SODIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HNCO; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, NMRVIEW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 7 86.42 58.14 REMARK 500 1 THR A 40 23.42 -154.84 REMARK 500 1 THR A 44 -169.66 51.39 REMARK 500 1 ASN A 66 74.54 57.88 REMARK 500 1 ASP A 73 108.97 -47.55 REMARK 500 1 ALA A 92 -83.00 -53.21 REMARK 500 1 PRO A 95 105.10 -57.07 REMARK 500 2 SER A 2 -65.81 -103.86 REMARK 500 2 ASP A 7 76.49 57.72 REMARK 500 2 ASP A 23 40.40 -95.23 REMARK 500 2 SER A 25 19.10 57.76 REMARK 500 2 SER A 38 102.44 -165.72 REMARK 500 2 THR A 40 19.41 -159.24 REMARK 500 2 GLU A 42 90.38 57.17 REMARK 500 2 PRO A 65 44.84 -74.10 REMARK 500 2 ASN A 66 69.50 -167.75 REMARK 500 2 LEU A 70 -67.11 -124.35 REMARK 500 2 ASP A 73 108.81 -51.07 REMARK 500 2 ASP A 74 14.21 59.39 REMARK 500 2 GLN A 78 33.60 -90.72 REMARK 500 2 ALA A 92 -86.64 -54.62 REMARK 500 2 PRO A 95 107.23 -58.24 REMARK 500 3 SER A 2 -53.35 -147.54 REMARK 500 3 ASP A 7 82.87 57.00 REMARK 500 3 GLU A 21 -32.83 -165.87 REMARK 500 3 THR A 44 -172.08 51.55 REMARK 500 3 ASN A 66 72.09 -174.59 REMARK 500 3 LEU A 70 -59.22 -121.56 REMARK 500 3 ASP A 73 108.62 -47.28 REMARK 500 3 GLN A 78 42.40 -92.28 REMARK 500 3 ALA A 92 -85.03 -52.33 REMARK 500 3 PRO A 95 104.10 -58.91 REMARK 500 4 HIS A 3 -24.91 -148.89 REMARK 500 4 ASP A 7 78.74 54.29 REMARK 500 4 ASP A 23 34.09 -87.37 REMARK 500 4 SER A 25 17.62 58.32 REMARK 500 4 THR A 40 8.97 -161.16 REMARK 500 4 ALA A 43 61.57 -161.80 REMARK 500 4 LEU A 70 -60.19 -107.34 REMARK 500 4 GLN A 78 44.85 -95.41 REMARK 500 4 ALA A 92 -86.49 -58.06 REMARK 500 4 PRO A 95 104.93 -56.28 REMARK 500 5 ASP A 23 39.72 -84.46 REMARK 500 5 SER A 25 17.39 56.83 REMARK 500 5 ASP A 36 -65.91 -103.53 REMARK 500 5 GLN A 37 77.87 60.44 REMARK 500 5 SER A 38 86.49 58.18 REMARK 500 5 THR A 44 -167.25 50.85 REMARK 500 5 PRO A 65 174.73 -55.00 REMARK 500 5 LEU A 70 -65.69 -102.37 REMARK 500 REMARK 500 THIS ENTRY HAS 273 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15328 RELATED DB: BMRB DBREF 2JRE A 1 108 PDB 2JRE 2JRE 1 108 SEQRES 1 A 108 GLY SER HIS GLY TYR SER ASP ALA SER GLY PHE SER LEU SEQRES 2 A 108 TYR SER VAL GLU LEU PHE ARG GLU LYS ASP THR SER SER SEQRES 3 A 108 LEU GLY ILE SER ILE SER GLY MET ARG ASP GLN SER THR SEQRES 4 A 108 THR GLY GLU ALA THR GLY ILE TYR VAL LYS SER LEU ILE SEQRES 5 A 108 PRO GLY SER ALA ALA ALA LEU ASP GLY ARG ILE GLU PRO SEQRES 6 A 108 ASN ASP LYS ILE LEU ARG VAL ASP ASP VAL ASN VAL GLN SEQRES 7 A 108 GLY MET ALA GLN SER ASP VAL VAL GLU VAL LEU ARG ASN SEQRES 8 A 108 ALA GLY ASN PRO VAL ARG LEU LEU LEU ILE ARG ARG LEU SEQRES 9 A 108 PRO LEU LEU GLU HELIX 1 1 SER A 55 GLY A 61 1 7 HELIX 2 2 ALA A 81 GLY A 93 1 13 SHEET 1 A 5 SER A 12 PHE A 19 0 SHEET 2 A 5 PRO A 95 ARG A 102 -1 O LEU A 98 N VAL A 16 SHEET 3 A 5 ASP A 67 VAL A 72 -1 N LYS A 68 O ILE A 101 SHEET 4 A 5 TYR A 47 LEU A 51 -1 N VAL A 48 O ASP A 67 SHEET 5 A 5 ILE A 29 SER A 32 -1 N SER A 30 O LYS A 49 SHEET 1 B 4 SER A 12 PHE A 19 0 SHEET 2 B 4 PRO A 95 ARG A 102 -1 O LEU A 98 N VAL A 16 SHEET 3 B 4 ASP A 67 VAL A 72 -1 N LYS A 68 O ILE A 101 SHEET 4 B 4 VAL A 75 ASN A 76 -1 O VAL A 75 N VAL A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1