HEADER RNA 26-JUN-07 2JRG TITLE NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA-VAL3 WITH 2 TITLE 2 MODIFICATIONS (CMO5U34 M6A37) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*CP*CP*UP*CP*CP*CP*UP*(CM0)P*AP*CP*(6MZ) COMPND 3 P*AP*GP*GP*AP*GP*G)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS E.COLI, VALINE, TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, KEYWDS 2 URIDINE 5-OXYACETIC ACID, CMO5U, N6-METHYLADENOSINE, M6A, RNA EXPDTA SOLUTION NMR NUMMDL 11 MDLTYP MINIMIZED AVERAGE AUTHOR F.A.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM,B.SPROAT, AUTHOR 2 A.MALKIEWICZ,P.F.AGRIS REVDAT 5 20-DEC-23 2JRG 1 REMARK SEQRES LINK REVDAT 4 01-FEB-12 2JRG 1 MODRES VERSN REVDAT 3 24-FEB-09 2JRG 1 VERSN REVDAT 2 23-SEP-08 2JRG 1 JRNL REVDAT 1 24-JUL-07 2JRG 0 JRNL AUTH F.A.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM,B.SPROAT, JRNL AUTH 2 A.MALKIEWICZ,P.F.AGRIS JRNL TITL ANTICODON DOMAIN MODIFICATIONS CONTRIBUTE ORDER TO TRNA FOR JRNL TITL 2 RIBOSOME-MEDIATED CODON BINDING. JRNL REF BIOCHEMISTRY V. 47 6117 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18473483 JRNL DOI 10.1021/BI702356J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANNEAL.INP PROTOCOL IN CNS REMARK 4 REMARK 4 2JRG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100196. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295; 275 REMARK 210 PH : 6.2; 6.2 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5-2 MM RNA 17MER, 90% H2O/10% REMARK 210 D2O; 1.5-2 MM RNA 17MER, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D DQF-COSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-13C HSQC; 2D REMARK 210 1H-1H NOESY; 2D 1H-31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRDRAW 3.0, SPARKY, CNS REMARK 210 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CM0 A 34 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6MZ A 37 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JR4 RELATED DB: PDB REMARK 900 RELATED ID: 2JRQ RELATED DB: PDB DBREF 2JRG A 27 43 PDB 2JRG 2JRG 27 43 SEQRES 1 A 17 C C U C C C U CM0 A C 6MZ A G SEQRES 2 A 17 G A G G MODRES 2JRG 6MZ A 37 A N6-METHYLADENOSINE-5'-MONOPHOSPHATE HET CM0 A 34 36 HET 6MZ A 37 36 HETNAM CM0 5-(CARBOXYMETHOXY) URIDINE-5'-MONOPHOSPHATE HETNAM 6MZ N6-METHYLADENOSINE-5'-MONOPHOSPHATE FORMUL 1 CM0 C11 H15 N2 O12 P FORMUL 1 6MZ C11 H16 N5 O7 P LINK O3' U A 33 P CM0 A 34 1555 1555 1.61 LINK O3' CM0 A 34 P A A 35 1555 1555 1.61 LINK O3' C A 36 P 6MZ A 37 1555 1555 1.61 LINK O3' 6MZ A 37 P A A 38 1555 1555 1.61 SITE 1 AC1 2 U A 33 A A 35 SITE 1 AC2 3 A A 35 C A 36 A A 38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1