HEADER HYDROLASE/SIGNALING PROTEIN 27-JUN-07 2JRI TITLE SOLUTION STRUCTURE OF THE JOSEPHIN DOMAIN OF ATAXIN-3 IN COMPLEX WITH TITLE 2 UBIQUITIN MOLECULE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATAXIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN OF ATAXIN-3 SEQUENCE DATABASE RESIDUES 1- COMPND 5 182; COMPND 6 SYNONYM: MACHADO-JOSEPH DISEASE PROTEIN 1, SPINOCEREBELLAR ATAXIA COMPND 7 TYPE 3 PROTEIN; COMPND 8 EC: 3.4.22.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: UBC PROTEIN; COMPND 12 CHAIN: B, C; COMPND 13 FRAGMENT: SEQUENCE DATABASE RESIDUES 318-469; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: ATXN3, ATX3, MJD, MJD1, SCA3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 GENE: UBC; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 14 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET21B KEYWDS DI-UBIQUITIN, LYS48-LINKED, JOSEPHIN DOMAIN OF ATAXIN-3, KEYWDS 2 SPINOCEREBELLAR ATAXIA TYPE 3 PROTEIN, ALTERNATIVE SPLICING, KEYWDS 3 HYDROLASE, NEURODEGENERATION, NUCLEUS, PHOSPHORYLATION, KEYWDS 4 POLYMORPHISM, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRIPLET KEYWDS 5 REPEAT EXPANSION, HYDROLASE-SIGNALING PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.NICASTRO,L.MASINO,V.ESPOSITO,R.MENON,A.PASTORE REVDAT 3 09-MAR-22 2JRI 1 REMARK REVDAT 2 24-FEB-09 2JRI 1 VERSN REVDAT 1 01-JUL-08 2JRI 0 JRNL AUTH G.NICASTRO,R.MENON,L.MASINO,A.PASTORE JRNL TITL UNDERSTANDING THE PLASTICITY OF THE UBIQUITIN-PROTEIN JRNL TITL 2 RECOGNITION CODE: THE JOSEPHIN DOMAIN OF ATAXIN-3 IS A JRNL TITL 3 DIUBIQUITIN BINDING MOTIF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.NICASTRO,L.MASINO,V.ESPOSITO,R.MENON,A.PASTORE REMARK 1 TITL THE SOLUTION STRUCTURE OF THE JOSEPHIN DOMAIN OF ATAXIN-3: REMARK 1 TITL 2 STRUCTURAL DETERMINANTS FOR MOLECULAR RECOGNITION. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 102 10493 2005 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 16020535 REMARK 1 DOI 10.1073/PNAS.0501732102 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.1, HADDOCK 2.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), DOMINGUEZ, REMARK 3 BOELENS, BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN EXPLICIT SOLVENT REMARK 4 REMARK 4 2JRI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100198. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1 - 0.3 MM [U-15N] PROTEIN, REMARK 210 0.1 -0.3 MM [U-13C; U-15N] REMARK 210 PROTEIN, 0.1-0.3 MM PROTEIN, 0.1- REMARK 210 0.3 MM [U-13C; U-15N; U-2H] REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY-HSQC; 3D 1H-13C REMARK 210 NOESY-HSQC; 3D FILTERED 13C 15N REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : HADDOCK 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 203 HZ3 LYS B 211 1.57 REMARK 500 HG1 THR A 54 OD1 ASP A 57 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -88.97 -92.16 REMARK 500 1 SER A 12 -172.00 63.58 REMARK 500 1 LEU A 23 41.82 -83.52 REMARK 500 1 GLN A 24 -38.91 71.64 REMARK 500 1 TYR A 27 -24.04 -170.09 REMARK 500 1 ARG A 59 -66.66 -121.67 REMARK 500 1 SER A 66 -40.99 76.33 REMARK 500 1 ASN A 68 51.20 -109.31 REMARK 500 1 MET A 69 129.90 82.26 REMARK 500 1 SER A 76 -149.01 -83.52 REMARK 500 1 LYS A 117 -57.19 73.29 REMARK 500 1 CYS A 172 -169.09 -111.02 REMARK 500 1 LEU B 190 84.22 -68.50 REMARK 500 1 THR B 191 -14.98 177.14 REMARK 500 1 VAL B 199 -165.62 -128.84 REMARK 500 1 GLN B 244 -156.88 -120.44 REMARK 500 1 LEU B 253 164.91 176.76 REMARK 500 1 ILE C 261 -121.94 -83.04 REMARK 500 1 THR C 272 82.21 -65.77 REMARK 500 1 ALA C 304 79.62 60.47 REMARK 500 1 ASN C 318 7.98 83.83 REMARK 500 1 ILE C 319 103.65 -53.94 REMARK 500 1 GLU C 322 70.03 57.86 REMARK 500 1 LEU C 329 9.08 -151.05 REMARK 500 2 GLU A 2 -134.01 -105.14 REMARK 500 2 SER A 3 98.25 -65.64 REMARK 500 2 SER A 12 -168.97 61.90 REMARK 500 2 GLN A 16 48.39 -80.94 REMARK 500 2 HIS A 17 -48.34 -164.43 REMARK 500 2 GLN A 24 74.18 58.89 REMARK 500 2 TYR A 27 -82.74 -128.34 REMARK 500 2 SER A 66 -40.87 73.12 REMARK 500 2 MET A 69 -73.54 -177.17 REMARK 500 2 ASP A 70 -107.61 -172.17 REMARK 500 2 ASP A 71 -64.97 -166.65 REMARK 500 2 SER A 72 -141.86 -99.00 REMARK 500 2 VAL A 79 46.36 -84.32 REMARK 500 2 ILE A 80 -66.47 -143.98 REMARK 500 2 ARG A 101 42.62 -97.15 REMARK 500 2 ILE A 104 -108.77 -122.53 REMARK 500 2 ASP A 105 124.28 -174.34 REMARK 500 2 LYS A 117 -48.45 74.32 REMARK 500 2 GLU A 118 -57.26 -128.80 REMARK 500 2 LYS A 128 -41.06 163.33 REMARK 500 2 LEU A 136 -49.27 -162.35 REMARK 500 2 LEU A 142 97.75 -49.42 REMARK 500 2 TYR A 160 -157.73 -97.75 REMARK 500 2 ASP A 175 31.67 -97.83 REMARK 500 2 GLN A 176 -44.85 -134.68 REMARK 500 2 LEU A 178 47.17 -80.82 REMARK 500 REMARK 500 THIS ENTRY HAS 492 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6241 RELATED DB: BMRB REMARK 900 THIS ENTRY CONTAINS THE ASSIGNMENT RESONANCES OF THE JOSEPHIN REMARK 900 DOMAIN OF ATAXIN-3 REMARK 900 RELATED ID: 1YZB RELATED DB: PDB REMARK 900 THE ENTRY CONTAINS THE COORDINATE OF THE JOSEPHIN DOMAIN OF ATAXIN-3 DBREF 2JRI A 1 182 UNP P54252 ATX3_HUMAN 1 182 DBREF 2JRI B 183 258 UNP Q96H31 Q96H31_HUMAN 318 393 DBREF 2JRI C 259 334 UNP Q96H31 Q96H31_HUMAN 318 393 SEQRES 1 A 182 MET GLU SER ILE PHE HIS GLU LYS GLN GLU GLY SER LEU SEQRES 2 A 182 CYS ALA GLN HIS CYS LEU ASN ASN LEU LEU GLN GLY GLU SEQRES 3 A 182 TYR PHE SER PRO VAL GLU LEU SER SER ILE ALA HIS GLN SEQRES 4 A 182 LEU ASP GLU GLU GLU ARG MET ARG MET ALA GLU GLY GLY SEQRES 5 A 182 VAL THR SER GLU ASP TYR ARG THR PHE LEU GLN GLN PRO SEQRES 6 A 182 SER GLY ASN MET ASP ASP SER GLY PHE PHE SER ILE GLN SEQRES 7 A 182 VAL ILE SER ASN ALA LEU LYS VAL TRP GLY LEU GLU LEU SEQRES 8 A 182 ILE LEU PHE ASN SER PRO GLU TYR GLN ARG LEU ARG ILE SEQRES 9 A 182 ASP PRO ILE ASN GLU ARG SER PHE ILE CYS ASN TYR LYS SEQRES 10 A 182 GLU HIS TRP PHE THR VAL ARG LYS LEU GLY LYS GLN TRP SEQRES 11 A 182 PHE ASN LEU ASN SER LEU LEU THR GLY PRO GLU LEU ILE SEQRES 12 A 182 SER ASP THR TYR LEU ALA LEU PHE LEU ALA GLN LEU GLN SEQRES 13 A 182 GLN GLU GLY TYR SER ILE PHE VAL VAL LYS GLY ASP LEU SEQRES 14 A 182 PRO ASP CYS GLU ALA ASP GLN LEU LEU GLN MET ILE ARG SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 LEU A 13 ASN A 21 1 9 HELIX 2 2 VAL A 31 GLY A 51 1 21 HELIX 3 3 GLU A 56 PHE A 61 1 6 HELIX 4 4 SER A 76 GLY A 88 1 13 HELIX 5 5 SER A 96 ARG A 101 1 6 HELIX 6 6 SER A 144 GLY A 159 1 16 HELIX 7 7 CYS A 172 LEU A 178 1 7 HELIX 8 8 GLN A 179 ILE A 181 5 3 HELIX 9 9 THR B 204 GLU B 216 1 13 HELIX 10 10 PRO B 219 GLN B 223 5 5 HELIX 11 11 LEU B 238 ASN B 242 5 5 HELIX 12 12 THR C 280 GLU C 292 1 13 HELIX 13 13 THR C 313 ASN C 318 1 6 SHEET 1 A 6 GLU A 90 LEU A 93 0 SHEET 2 A 6 SER A 161 LYS A 166 -1 O VAL A 164 N ILE A 92 SHEET 3 A 6 SER A 111 ASN A 115 -1 N ILE A 113 O PHE A 163 SHEET 4 A 6 TRP A 120 LEU A 126 -1 O PHE A 121 N CYS A 114 SHEET 5 A 6 GLN A 129 LEU A 133 -1 O GLN A 129 N LEU A 126 SHEET 6 A 6 GLU A 141 ILE A 143 -1 O ILE A 143 N TRP A 130 SHEET 1 B 5 THR B 194 GLU B 198 0 SHEET 2 B 5 GLN B 184 THR B 189 -1 N VAL B 187 O ILE B 195 SHEET 3 B 5 THR B 248 VAL B 252 1 O LEU B 249 N LYS B 188 SHEET 4 B 5 ARG B 224 PHE B 227 -1 N ILE B 226 O HIS B 250 SHEET 5 B 5 LYS B 230 GLN B 231 -1 O LYS B 230 N PHE B 227 SHEET 1 C 2 ARG C 300 ILE C 302 0 SHEET 2 C 2 HIS C 326 VAL C 328 -1 O HIS C 326 N ILE C 302 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1