HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-JUN-07 2JRO TITLE SOLUTION NMR STRUCTURE OF SO0334 FROM SHEWANELLA ONEIDENSIS. NORTHEAST TITLE 2 STRUCTURAL GENOMICS TARGET SOR75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_0334; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: SOR75_21.1; SOURCE 11 OTHER_DETAILS: THE PROTEIN IS A MONOMER BY GEL FILTRATION SOURCE 12 CHROMATOGRAPHY AND STATIC LIGHT SCATTERING. KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,D.WANG,C.NWOSU,K.CUNNINGHAM,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 01-MAY-24 2JRO 1 REMARK SEQADV REVDAT 4 13-JUL-11 2JRO 1 VERSN REVDAT 3 24-FEB-09 2JRO 1 VERSN REVDAT 2 06-MAY-08 2JRO 1 SOURCE REVDAT 1 21-AUG-07 2JRO 0 JRNL AUTH Y.TANG,D.WANG,C.NWOSU,K.CUNNINGHAM,R.XIAO,J.LIU,M.C.BARAN, JRNL AUTH 2 G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION STRUCTURE OF SO0334 FROM SHEWANELLA ONEIDENSIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, X-PLOR NIH 2.11.2, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1006 CONFORMATIONALLY- REMARK 3 RESTRICTING NOE-DERIVED DISTANCE CONSTRAINTS, 68 DIHEDRAL ANGLE REMARK 3 CONSTRAINTS, AND 42 HYDROGEN BOND CONSTRAINTS (15.3 CONSTRAINTS REMARK 3 PER RESIDUE, 4.2 LONG RANGE CONSTRAINTS PER RESIDUE, COMPUTED FOR REMARK 3 RESIDUES 1 TO 74 BY PSVS 1.3) STRUCTURE DETERMINATION WAS REMARK 3 PERFORMED ITERATIVELY USING AUTOSTRUCTURE (XPLOR-NIH). AFTER A REMARK 3 FINAL XPLOR CALCULATION USING THE CONSTRAINTS DERIVED FROM REMARK 3 AUTOSTRUCTURE. THE 20 LOWEST ENERGY STRUCTURES OUT OF 100 WERE REMARK 3 FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS). THE C-TERMINAL HIS TAG REMARK 3 RESDIUES OF THE PROTEIN (HHHH) WERE INCLUDED IN ALL STRUCTURE REMARK 3 CALCULATIONS BUT HAVE BEEN OMITTED FROM THIS DEPOSITION. REMARK 3 COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT WELL REMARK 3 DETERMINED(S(PHI)+S(PSI)<1.8): 1, 6-8, 39-46, 65-74. THE STRUCTURE REMARK 3 WAS DETERMINED USING TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED REMARK 3 BACKBONE ASSIGNMENTS WERE MADE USING AUTOASSIGN AND THE SIDE CHAIN REMARK 3 ASSIGNMENT REMARK 3 WERE COMPLETED MANUALLY. AUTOMATIC NOESY ASSIGNMENTS AS WELL AS REMARK 3 DISTANCE, DIHEDRAL ANGLE (HYPER) AND HYDROGEN BOND CONSTRAINTS REMARK 3 WERE DETERMINED USING AUTOSTRUCTURE. COMPLETENESS OF NMR REMARK 3 ASSIGNMENT (EXCLUDING C-TERMINAL HHHH): BACKBONE,98.87%, SIDE REMARK 3 CHAIN, 94.56%, AROMATICS, 100%, STEREOSPECIFIC METHYL, 88.23%, REMARK 3 FINAL STRUCTURE QUALITY FACTORS (FOR RESIDUE 1-74 PSVS 1.3), WHERE REMARK 3 ORDERED RESIDUES (S(PHI)+S(PSI)>1.8) COMPRISE: 2-5, 9-38, 47-64.. REMARK 3 (A) RMSD (ORDERED RESIDUES): BB 0.6, HEAVY ATOM: 1.1 (B) REMARK 3 RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST FAVORED, 91.85%, REMARK 3 ADDITIONALLY ALLOWED: 8.5%, GENEROUSLY ALLOWED : 0.0%, DISALLOWED, REMARK 3 0.0%. (C) PROCHECK SCORES FOR ORDERED RESIDUES (RAW/Z): PHI-PSI, - REMARK 3 0.11/-0.12, ALL , -0.14/-0.83. (D) MOLPROBITY CLASH SCORE (RAW/Z): REMARK 3 19.48/-1.82. (E) RPF SCORES FOR GOODNESS OF FIT TO NOESY DATA REMARK 3 (RESIDUE 1-60): RECALL, 0987, PRECISION, 0.914, F-MEASURE, 0.949, REMARK 3 DP-SCORE, 0.788. REMARK 4 REMARK 4 2JRO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 100 MM NACL, REMARK 210 5 MM CACL2, 10 MM DTT, 0.02 % REMARK 210 NAN3, 95% H2O/5% D2O; 0.95 MM [U- REMARK 210 5% 13C; U-100% 15N] PROTEIN, 20 REMARK 210 MM MES, 100 MM NACL, 5 MM CACL2, REMARK 210 10 MM DTT, 0.02 % NAN3, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HNCO; 3D HNCACB; 3D NH(CO)CACB; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D CCH-TOCSY; 2D 1H- REMARK 210 13C HSQC_HIGH RESOLUTION REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.2.1, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.1.1, NMRPIPE 2.3, REMARK 210 X-PLOR NIH 2.11.2, CNS 1.1, REMARK 210 PSVS 1.3, PDBSTAT 4.0, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 7 -85.24 -80.56 REMARK 500 1 ALA A 8 81.05 53.17 REMARK 500 1 LEU A 20 -36.54 -29.30 REMARK 500 1 ARG A 43 -163.77 -167.01 REMARK 500 1 SER A 45 -164.24 61.20 REMARK 500 1 ASN A 64 -70.31 -76.08 REMARK 500 1 HIS A 65 -38.91 69.79 REMARK 500 1 THR A 67 85.65 56.86 REMARK 500 1 ALA A 70 -51.28 -130.16 REMARK 500 1 HIS A 73 134.05 77.68 REMARK 500 2 LEU A 20 -26.33 -32.03 REMARK 500 2 LEU A 29 -76.68 -100.92 REMARK 500 2 PHE A 39 127.69 67.69 REMARK 500 2 LEU A 46 132.58 77.65 REMARK 500 2 THR A 67 -140.31 55.59 REMARK 500 2 ALA A 70 90.51 -69.88 REMARK 500 2 LEU A 71 107.45 62.21 REMARK 500 3 LEU A 20 -27.39 -31.77 REMARK 500 3 LEU A 29 -61.50 -139.13 REMARK 500 3 SER A 45 -82.38 -135.28 REMARK 500 3 GLN A 66 84.92 60.93 REMARK 500 3 ALA A 70 -156.44 -85.64 REMARK 500 4 LEU A 20 -17.68 -35.67 REMARK 500 4 PRO A 42 82.12 -68.59 REMARK 500 4 ARG A 43 -80.43 66.79 REMARK 500 4 LYS A 44 -41.76 -142.99 REMARK 500 4 SER A 45 -95.52 55.80 REMARK 500 4 ASN A 64 -71.26 -75.55 REMARK 500 4 ALA A 70 13.12 58.35 REMARK 500 4 HIS A 73 -83.43 73.29 REMARK 500 5 LEU A 20 -34.38 -29.93 REMARK 500 5 LEU A 29 -59.94 -125.62 REMARK 500 5 PRO A 42 -106.61 -99.84 REMARK 500 5 ALA A 70 -177.66 67.72 REMARK 500 6 TYR A 7 86.96 57.20 REMARK 500 6 LEU A 20 -31.55 -29.20 REMARK 500 6 LEU A 29 -50.54 -125.90 REMARK 500 6 LYS A 44 80.41 60.66 REMARK 500 6 ASN A 64 -72.08 -67.82 REMARK 500 6 LYS A 68 41.85 -85.33 REMARK 500 6 THR A 69 34.47 -85.18 REMARK 500 6 HIS A 73 63.73 -112.96 REMARK 500 7 LEU A 20 -21.74 -34.99 REMARK 500 7 LEU A 29 -53.35 -129.05 REMARK 500 7 LEU A 40 -169.24 52.95 REMARK 500 7 PRO A 42 87.12 -60.65 REMARK 500 7 ARG A 43 -94.84 56.54 REMARK 500 7 GLN A 66 2.86 167.72 REMARK 500 8 TYR A 7 -83.40 -75.26 REMARK 500 8 ALA A 8 88.87 49.66 REMARK 500 REMARK 500 THIS ENTRY HAS 116 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SOR75 RELATED DB: TARGETDB DBREF 2JRO A 1 70 UNP Q8EJX2 Q8EJX2_SHEON 1 70 SEQADV 2JRO LEU A 71 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO GLU A 72 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO HIS A 73 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO HIS A 74 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO HIS A 75 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO HIS A 76 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO HIS A 77 UNP Q8EJX2 CLONING ARTIFACT SEQADV 2JRO HIS A 78 UNP Q8EJX2 CLONING ARTIFACT SEQRES 1 A 78 MET ARG VAL PHE PRO VAL TYR ALA PRO LYS LEU ILE VAL SEQRES 2 A 78 LYS HIS ALA ARG ILE PHE LEU THR GLY VAL ILE TRP VAL SEQRES 3 A 78 LYS ASP LEU GLY ARG LEU GLU PHE GLU LYS GLY ARG PHE SEQRES 4 A 78 LEU LEU PRO ARG LYS SER LEU PRO LYS VAL LYS GLN ALA SEQRES 5 A 78 ILE LEU GLU LEU ASN GLU LEU ILE GLU ALA GLN ASN HIS SEQRES 6 A 78 GLN THR LYS THR ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ALA A 8 LEU A 20 1 13 HELIX 2 2 LEU A 46 HIS A 65 1 20 SHEET 1 A 4 ARG A 2 PHE A 4 0 SHEET 2 A 4 GLY A 22 VAL A 26 1 O TRP A 25 N PHE A 4 SHEET 3 A 4 GLY A 30 GLU A 35 -1 O LEU A 32 N ILE A 24 SHEET 4 A 4 ARG A 38 PHE A 39 -1 O ARG A 38 N GLU A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1