HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-JUN-07 2JRP TITLE SOLUTION NMR STRUCTURE OF YFGJ FROM SALMONELLA TYPHIMURIUM MODELED TITLE 2 WITH TWO ZN+2 BOUND, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 STR86 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CYTOPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2, SGSC1412; SOURCE 5 ATCC: 700720; SOURCE 6 GENE: YFGJ, STM2518; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS TWO-ZINC BINDING PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.DING,T.A.RAMELOT,J.R.CORT,H.WANG,C.NWOSU,K.CUNNINGHAM,L.OWENS,L.MA, AUTHOR 2 R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 29-MAY-24 2JRP 1 REMARK REVDAT 5 09-MAR-22 2JRP 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 2JRP 1 VERSN REVDAT 3 06-MAY-08 2JRP 1 SOURCE REVDAT 2 14-AUG-07 2JRP 1 TITLE REVDAT 1 10-JUL-07 2JRP 0 JRNL AUTH K.DING,T.A.RAMELOT,J.R.CORT,H.WANG,C.NWOSU,K.CUNNINGHAM, JRNL AUTH 2 L.OWENS,L.MA,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON, JRNL AUTH 3 B.ROST,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF YFGJ FROM SALMONELLA TYPHIMURIUM JRNL TITL 2 MODELED WITH TWO ZN+2 BOUND. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA USING XPLOR NIH AND THEN FOLLOWED REMARK 3 BY CNS WATER REFINEMENT. REMARK 4 REMARK 4 2JRP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100205. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 95% H2O/5% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 100% D2O; 1.7 MM [U- REMARK 210 5% 13C; U-100% 15N] PROTEIN, 20 REMARK 210 MM NH4OAC, 100 MM NACL, 10 MM REMARK 210 DTT, 5 MM CACL2, 0.02 % NAN3, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HNHA; REMARK 210 3D HCCH-TOCSY; 3D C(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 AROMATIC 1H-13C NOESY; 4D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.15.0, AUTOSTRUCTURE REMARK 210 2.1.1, SPARKY 3.1, NMRPIPE LINUX9 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST BOND REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 75 HD1 HIS A 76 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -173.80 60.22 REMARK 500 1 HIS A 10 -83.80 -116.89 REMARK 500 1 ALA A 11 124.74 -172.13 REMARK 500 1 ASP A 17 -60.05 69.05 REMARK 500 1 GLU A 22 -96.33 -51.26 REMARK 500 1 CYS A 24 -30.59 102.40 REMARK 500 1 PRO A 40 5.38 -66.71 REMARK 500 1 LEU A 41 -84.59 63.71 REMARK 500 1 GLN A 55 -84.69 -69.54 REMARK 500 1 HIS A 58 -62.70 -165.81 REMARK 500 1 HIS A 76 -81.06 -69.63 REMARK 500 1 HIS A 77 78.84 -113.16 REMARK 500 1 HIS A 78 -45.31 173.30 REMARK 500 2 THR A 23 -56.24 -131.10 REMARK 500 2 ASP A 36 -99.15 -85.99 REMARK 500 2 CYS A 37 108.84 -54.42 REMARK 500 2 GLN A 39 -62.81 -128.45 REMARK 500 2 PRO A 40 40.66 -81.10 REMARK 500 2 HIS A 58 -76.19 -95.27 REMARK 500 2 HIS A 76 -31.52 178.33 REMARK 500 2 HIS A 77 37.60 175.77 REMARK 500 2 HIS A 78 -98.80 62.25 REMARK 500 2 HIS A 79 -76.49 -179.95 REMARK 500 3 THR A 4 125.90 69.61 REMARK 500 3 CYS A 24 124.43 98.18 REMARK 500 3 ALA A 25 40.99 -78.52 REMARK 500 3 CYS A 47 -87.52 64.62 REMARK 500 3 HIS A 58 -70.92 -170.39 REMARK 500 3 HIS A 77 77.21 51.40 REMARK 500 3 HIS A 78 93.44 -66.65 REMARK 500 4 HIS A 9 87.94 -60.27 REMARK 500 4 GLU A 22 -89.57 -64.40 REMARK 500 4 CYS A 24 93.01 54.16 REMARK 500 4 CYS A 47 -83.57 66.30 REMARK 500 4 HIS A 58 -63.11 -138.46 REMARK 500 4 HIS A 77 140.98 75.75 REMARK 500 4 HIS A 78 85.90 67.20 REMARK 500 5 PRO A 6 -73.92 -61.72 REMARK 500 5 CYS A 8 36.99 -96.63 REMARK 500 5 HIS A 9 96.73 -42.98 REMARK 500 5 HIS A 10 65.10 -178.81 REMARK 500 5 ALA A 11 154.10 57.01 REMARK 500 5 ALA A 25 68.81 -113.63 REMARK 500 5 ALA A 32 98.89 -69.36 REMARK 500 5 ASP A 36 -85.07 -65.58 REMARK 500 5 HIS A 58 -80.04 71.07 REMARK 500 5 LEU A 60 103.34 -59.95 REMARK 500 5 HIS A 76 86.39 65.03 REMARK 500 5 HIS A 77 106.51 -58.68 REMARK 500 5 HIS A 80 -37.44 -157.52 REMARK 500 REMARK 500 THIS ENTRY HAS 200 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 GLU A 22 OE1 110.6 REMARK 620 3 GLU A 22 OE2 106.4 65.1 REMARK 620 4 THR A 23 O 116.4 132.9 97.5 REMARK 620 5 THR A 23 OG1 97.7 82.5 144.7 94.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 HIS A 58 ND1 103.8 REMARK 620 3 GLY A 59 O 94.9 116.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STR86 RELATED DB: TARGETDB DBREF 2JRP A 1 73 UNP Q8ZN54 Q8ZN54_SALTY 1 73 SEQADV 2JRP LEU A 74 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP GLU A 75 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP HIS A 76 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP HIS A 77 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP HIS A 78 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP HIS A 79 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP HIS A 80 UNP Q8ZN54 CLONING ARTIFACT SEQADV 2JRP HIS A 81 UNP Q8ZN54 CLONING ARTIFACT SEQRES 1 A 81 MET GLU ILE THR CYS PRO VAL CYS HIS HIS ALA LEU GLU SEQRES 2 A 81 ARG ASN GLY ASP THR ALA HIS CYS GLU THR CYS ALA LYS SEQRES 3 A 81 ASP PHE SER LEU GLN ALA LEU CYS PRO ASP CYS ARG GLN SEQRES 4 A 81 PRO LEU GLN VAL LEU LYS ALA CYS GLY ALA VAL ASP TYR SEQRES 5 A 81 PHE CYS GLN ASN GLY HIS GLY LEU ILE SER LYS LYS ARG SEQRES 6 A 81 VAL ASN PHE VAL ILE SER ASP GLN LEU GLU HIS HIS HIS SEQRES 7 A 81 HIS HIS HIS HET ZN A 150 1 HET ZN A 200 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 A 4 GLU A 13 ARG A 14 0 SHEET 2 A 4 THR A 18 HIS A 20 -1 O HIS A 20 N GLU A 13 SHEET 3 A 4 ASP A 27 LEU A 33 -1 O PHE A 28 N ALA A 19 SHEET 4 A 4 ASN A 67 ILE A 70 -1 O VAL A 69 N GLN A 31 SHEET 1 B 2 VAL A 43 ALA A 46 0 SHEET 2 B 2 ALA A 49 TYR A 52 -1 O ASP A 51 N LEU A 44 LINK SG CYS A 8 ZN ZN A 150 1555 1555 1.91 LINK OE1 GLU A 22 ZN ZN A 150 1555 1555 1.98 LINK OE2 GLU A 22 ZN ZN A 150 1555 1555 1.96 LINK O THR A 23 ZN ZN A 150 1555 1555 1.98 LINK OG1 THR A 23 ZN ZN A 150 1555 1555 1.80 LINK SG CYS A 54 ZN ZN A 200 1555 1555 1.97 LINK ND1 HIS A 58 ZN ZN A 200 1555 1555 1.97 LINK O GLY A 59 ZN ZN A 200 1555 1555 1.98 SITE 1 AC1 4 CYS A 8 CYS A 21 GLU A 22 THR A 23 SITE 1 AC2 4 CYS A 34 CYS A 54 HIS A 58 GLY A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1