HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-07 2JRX TITLE SOLUTION NMR STRUCTURE OF PROTEIN YEJL FROM E. COLI. NORTHEAST TITLE 2 STRUCTURAL GENOMICS TARGET ER309 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0352 PROTEIN YEJL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE PROTEIN IS A HOMODIMER IN SOLUTION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YEJL, B2187, JW2175; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HOMODIMER, ALPHA HELIX, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,L.ZHAO,M.JIANG,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.C.BARAN, AUTHOR 2 G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 01-MAY-24 2JRX 1 REMARK SEQADV REVDAT 4 24-JAN-18 2JRX 1 AUTHOR REVDAT 3 13-JUL-11 2JRX 1 VERSN REVDAT 2 24-FEB-09 2JRX 1 VERSN REVDAT 1 07-AUG-07 2JRX 0 JRNL AUTH J.R.CORT,G.T.MONTELIONE,T.B.ACTON,M.A.KENNEDY JRNL TITL NMR CHEMICAL SHIFT ASSIGNMENTS OF E. COLI YEJL PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, CNS REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100213. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 130 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 5 % D2O, 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM AMMONIUM ACETATE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 5 MM CALCIUM CHLORIDE, 95% H2O/5% REMARK 210 D2O; 1.5 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 100 % D2O, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 100% D2O; 1.5 MM [5% REMARK 210 BIOSYNTHETICALLY DIRECTED 13C REMARK 210 LABELING; U-100% 15N] PROTEIN, 5 REMARK 210 % D2O, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM AMMONIUM ACETATE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HNHA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 4D REMARK 210 1H-13C-13C-1H HMQC NOESY; 3D 1H- REMARK 210 13C EDITED-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 44.77 -83.66 REMARK 500 1 LYS A 73 138.08 70.26 REMARK 500 1 HIS A 79 98.62 58.79 REMARK 500 1 HIS A 81 111.44 -169.96 REMARK 500 1 HIS A 82 -73.14 -84.58 REMARK 500 1 ILE B 4 -28.24 -179.27 REMARK 500 1 TYR B 7 -77.26 -100.54 REMARK 500 1 SER B 8 98.50 -174.73 REMARK 500 1 LYS B 27 107.44 67.94 REMARK 500 2 SER A 5 -72.15 65.87 REMARK 500 2 ARG A 6 18.93 -164.81 REMARK 500 2 LYS A 27 87.30 60.91 REMARK 500 2 GLN B 3 -1.25 70.03 REMARK 500 2 ILE B 4 -56.84 70.87 REMARK 500 2 SER B 5 -60.23 -146.78 REMARK 500 2 ARG B 6 -45.74 -146.87 REMARK 500 2 HIS B 80 108.92 74.00 REMARK 500 2 HIS B 81 45.95 -83.56 REMARK 500 3 SER A 5 -168.95 66.14 REMARK 500 3 ARG A 6 -55.87 -165.28 REMARK 500 3 LYS A 27 86.76 63.53 REMARK 500 3 ASN A 70 88.21 65.61 REMARK 500 3 HIS A 81 17.42 -147.35 REMARK 500 3 PRO B 2 99.01 -65.12 REMARK 500 3 LYS B 27 93.08 57.79 REMARK 500 3 LYS B 73 30.85 -155.31 REMARK 500 3 HIS B 79 179.69 66.96 REMARK 500 3 HIS B 81 77.11 -110.44 REMARK 500 4 PRO A 2 -179.53 -64.59 REMARK 500 4 ILE A 4 83.45 -66.93 REMARK 500 4 TYR A 7 -81.37 -112.07 REMARK 500 4 LYS A 27 90.45 67.09 REMARK 500 4 PRO A 51 83.49 -60.93 REMARK 500 4 ALA A 52 -70.67 -161.87 REMARK 500 4 ASP A 72 -61.72 70.25 REMARK 500 4 LYS A 73 133.16 -171.61 REMARK 500 4 ILE B 4 110.00 -52.13 REMARK 500 4 LYS B 27 85.54 62.15 REMARK 500 4 ASN B 70 -54.28 -154.96 REMARK 500 4 GLU B 71 -170.98 63.94 REMARK 500 4 LYS B 73 129.78 73.54 REMARK 500 4 HIS B 80 116.06 68.76 REMARK 500 4 HIS B 82 -70.38 -87.04 REMARK 500 5 GLN A 3 -83.39 64.45 REMARK 500 5 ILE A 4 158.15 178.83 REMARK 500 5 SER A 5 -72.30 -121.90 REMARK 500 5 LYS A 27 78.54 58.95 REMARK 500 5 ALA A 74 53.12 -155.10 REMARK 500 5 HIS A 75 179.97 71.49 REMARK 500 5 LYS B 27 93.34 64.06 REMARK 500 REMARK 500 THIS ENTRY HAS 219 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER309 RELATED DB: TARGETDB DBREF 2JRX A 1 75 UNP P0AD24 YEJL_ECOLI 1 75 DBREF 2JRX B 1 75 UNP P0AD24 YEJL_ECOLI 1 75 SEQADV 2JRX LEU A 76 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX GLU A 77 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS A 78 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS A 79 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS A 80 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS A 81 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS A 82 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS A 83 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX LEU B 76 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX GLU B 77 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS B 78 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS B 79 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS B 80 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS B 81 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS B 82 UNP P0AD24 CLONING ARTIFACT SEQADV 2JRX HIS B 83 UNP P0AD24 CLONING ARTIFACT SEQRES 1 A 83 MET PRO GLN ILE SER ARG TYR SER ASP GLU GLN VAL GLU SEQRES 2 A 83 GLN LEU LEU ALA GLU LEU LEU ASN VAL LEU GLU LYS HIS SEQRES 3 A 83 LYS ALA PRO THR ASP LEU SER LEU MET VAL LEU GLY ASN SEQRES 4 A 83 MET VAL THR ASN LEU ILE ASN THR SER ILE ALA PRO ALA SEQRES 5 A 83 GLN ARG GLN ALA ILE ALA ASN SER PHE ALA ARG ALA LEU SEQRES 6 A 83 GLN SER SER ILE ASN GLU ASP LYS ALA HIS LEU GLU HIS SEQRES 7 A 83 HIS HIS HIS HIS HIS SEQRES 1 B 83 MET PRO GLN ILE SER ARG TYR SER ASP GLU GLN VAL GLU SEQRES 2 B 83 GLN LEU LEU ALA GLU LEU LEU ASN VAL LEU GLU LYS HIS SEQRES 3 B 83 LYS ALA PRO THR ASP LEU SER LEU MET VAL LEU GLY ASN SEQRES 4 B 83 MET VAL THR ASN LEU ILE ASN THR SER ILE ALA PRO ALA SEQRES 5 B 83 GLN ARG GLN ALA ILE ALA ASN SER PHE ALA ARG ALA LEU SEQRES 6 B 83 GLN SER SER ILE ASN GLU ASP LYS ALA HIS LEU GLU HIS SEQRES 7 B 83 HIS HIS HIS HIS HIS HELIX 1 1 SER A 8 LYS A 27 1 20 HELIX 2 2 PRO A 29 ILE A 49 1 21 HELIX 3 3 GLN A 53 ILE A 69 1 17 HELIX 4 4 SER B 8 LYS B 25 1 18 HELIX 5 5 PRO B 29 ILE B 49 1 21 HELIX 6 6 GLN B 53 ILE B 69 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1