HEADER VIRAL PROTEIN 03-JUL-07 2JSF TITLE SOLUTION STRUCTURES OF THE ENVELOPE PROTEIN DOMAIN III FROM THE TITLE 2 DENGUE-2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOMAIN III OF ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 469-577; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 STRAIN: 2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-BLUE2 KEYWDS DOMAIN III, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.HUANG,J.CHENG REVDAT 3 13-JUL-11 2JSF 1 VERSN REVDAT 2 24-FEB-09 2JSF 1 VERSN REVDAT 1 13-MAY-08 2JSF 0 JRNL AUTH K.C.HUANG,M.C.LEE,C.W.WU,K.J.HUANG,H.Y.LEI,J.W.CHENG JRNL TITL SOLUTION STRUCTURE AND NEUTRALIZING ANTIBODY BINDING STUDIES JRNL TITL 2 OF DOMAIN III OF THE DENGUE-2 VIRUS ENVELOPE PROTEIN. JRNL REF PROTEINS V. 70 1116 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18004779 JRNL DOI 10.1002/PROT.21806 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100231. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.31 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-5 MM EDTA, 1-5 MM DTT, 1 MM REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D H(CCO)NH; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH, SPARKY, XWINNMR, REMARK 210 TALOS, PROCHECKNMR, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 35 O PRO A 76 1.43 REMARK 500 H ALA A 25 O VAL A 33 1.50 REMARK 500 O ILE A 92 H LEU A 99 1.51 REMARK 500 H CYS A 14 O LYS A 46 1.54 REMARK 500 H ILE A 90 O LEU A 101 1.55 REMARK 500 O ALA A 25 H VAL A 33 1.55 REMARK 500 O LYS A 17 H GLU A 39 1.57 REMARK 500 H LYS A 17 O GLU A 39 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 62.08 -166.74 REMARK 500 1 GLN A 5 -46.26 -153.45 REMARK 500 1 TYR A 11 -74.48 -149.16 REMARK 500 1 SER A 12 -122.29 -142.84 REMARK 500 1 MET A 13 98.24 -176.91 REMARK 500 1 CYS A 14 93.95 -62.85 REMARK 500 1 SER A 43 -154.09 56.39 REMARK 500 1 PRO A 44 89.28 -52.23 REMARK 500 1 ILE A 51 70.98 -159.64 REMARK 500 1 MET A 52 -67.65 -129.08 REMARK 500 1 ASP A 53 -161.39 172.67 REMARK 500 1 LEU A 54 -105.36 58.59 REMARK 500 1 HIS A 58 -140.00 -125.72 REMARK 500 1 VAL A 59 -42.98 -141.00 REMARK 500 1 LEU A 60 81.77 176.88 REMARK 500 1 VAL A 66 133.06 -30.94 REMARK 500 1 ASN A 67 74.92 27.52 REMARK 500 1 PRO A 68 -171.50 -60.80 REMARK 500 1 LYS A 73 -4.18 71.63 REMARK 500 1 PRO A 84 -75.20 -71.97 REMARK 500 1 GLU A 95 -58.22 -17.85 REMARK 500 1 PRO A 96 71.51 -53.17 REMARK 500 1 PHE A 104 -74.97 67.67 REMARK 500 1 LYS A 105 -155.52 64.79 REMARK 500 1 LYS A 106 -89.67 -76.40 REMARK 500 1 LEU A 110 81.76 53.38 REMARK 500 1 GLU A 111 80.56 -61.21 REMARK 500 1 HIS A 116 -49.34 -160.25 REMARK 500 2 GLN A 5 87.86 171.49 REMARK 500 2 LYS A 7 -82.75 59.62 REMARK 500 2 MET A 9 -69.42 -135.14 REMARK 500 2 TYR A 11 -74.09 -87.83 REMARK 500 2 SER A 12 -27.09 -145.61 REMARK 500 2 MET A 13 91.10 60.16 REMARK 500 2 SER A 43 -158.65 47.31 REMARK 500 2 PRO A 44 94.70 -42.86 REMARK 500 2 GLU A 50 113.59 -162.76 REMARK 500 2 MET A 52 -49.87 -153.70 REMARK 500 2 ASP A 53 80.76 45.21 REMARK 500 2 HIS A 58 -143.48 -141.70 REMARK 500 2 LEU A 60 -76.60 -134.32 REMARK 500 2 VAL A 66 132.84 -25.41 REMARK 500 2 ASN A 67 70.23 30.47 REMARK 500 2 PRO A 68 -175.87 -55.74 REMARK 500 2 LYS A 73 -5.08 71.57 REMARK 500 2 PRO A 84 -79.19 -62.74 REMARK 500 2 ASP A 87 176.69 -55.96 REMARK 500 2 SER A 88 131.37 173.91 REMARK 500 2 GLU A 95 -59.26 -14.54 REMARK 500 2 PRO A 96 74.84 -49.86 REMARK 500 REMARK 500 THIS ENTRY HAS 573 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JSF A 1 109 UNP P18356 POLG_DEN2U 469 577 SEQADV 2JSF LEU A 110 UNP P18356 EXPRESSION TAG SEQADV 2JSF GLU A 111 UNP P18356 EXPRESSION TAG SEQADV 2JSF HIS A 112 UNP P18356 EXPRESSION TAG SEQADV 2JSF HIS A 113 UNP P18356 EXPRESSION TAG SEQADV 2JSF HIS A 114 UNP P18356 EXPRESSION TAG SEQADV 2JSF HIS A 115 UNP P18356 EXPRESSION TAG SEQADV 2JSF HIS A 116 UNP P18356 EXPRESSION TAG SEQADV 2JSF HIS A 117 UNP P18356 EXPRESSION TAG SEQRES 1 A 117 MET ASP LYS LEU GLN LEU LYS GLY MET SER TYR SER MET SEQRES 2 A 117 CYS THR GLY LYS PHE LYS VAL VAL LYS GLU ILE ALA GLU SEQRES 3 A 117 THR GLN HIS GLY THR ILE VAL ILE ARG VAL GLN TYR GLU SEQRES 4 A 117 GLY ASP GLY SER PRO CYS LYS ILE PRO PHE GLU ILE MET SEQRES 5 A 117 ASP LEU GLU LYS ARG HIS VAL LEU GLY ARG LEU ILE THR SEQRES 6 A 117 VAL ASN PRO ILE VAL THR GLU LYS ASP SER PRO VAL ASN SEQRES 7 A 117 ILE GLU ALA GLU PRO PRO PHE GLY ASP SER TYR ILE ILE SEQRES 8 A 117 ILE GLY VAL GLU PRO GLY GLN LEU LYS LEU ASN TRP PHE SEQRES 9 A 117 LYS LYS GLY SER SER LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 53 ARG A 57 5 5 SHEET 1 A 4 LYS A 17 GLU A 26 0 SHEET 2 A 4 ILE A 32 GLU A 39 -1 O VAL A 33 N ALA A 25 SHEET 3 A 4 VAL A 77 GLU A 82 -1 O VAL A 77 N VAL A 36 SHEET 4 A 4 ARG A 62 LEU A 63 -1 N ARG A 62 O GLU A 82 SHEET 1 B 2 CYS A 45 LYS A 46 0 SHEET 2 B 2 ILE A 69 VAL A 70 -1 O VAL A 70 N CYS A 45 SHEET 1 C 3 PHE A 49 GLU A 50 0 SHEET 2 C 3 GLY A 86 ILE A 92 -1 O ILE A 91 N GLU A 50 SHEET 3 C 3 LEU A 99 LYS A 105 -1 O LEU A 101 N ILE A 90 SSBOND 1 CYS A 14 CYS A 45 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1