HEADER SIGNALING PROTEIN 10-JUL-07 2JSO TITLE ANTIMICROBIAL RESISTANCE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMYXIN RESISTANCE PROTEIN PMRD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BASR/PMRA POSTTRANSCRIPTIONAL ACTIVATOR, SIGNAL TRANSDUCTION COMPND 5 PROTEIN PMRD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PMRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A(+) KEYWDS PROTEIN, ANTIBIOTIC RESISTANCE, TRANSCRIPTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR C.JIN,W.FU REVDAT 5 01-MAY-24 2JSO 1 REMARK REVDAT 4 19-FEB-20 2JSO 1 REMARK REVDAT 3 13-JUL-11 2JSO 1 VERSN REVDAT 2 24-FEB-09 2JSO 1 VERSN REVDAT 1 04-SEP-07 2JSO 0 JRNL AUTH W.FU,F.YANG,X.KANG,X.ZHANG,Y.LI,B.XIA,C.JIN JRNL TITL FIRST STRUCTURE OF THE POLYMYXIN RESISTANCE PROTEINS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 361 1033 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17686460 JRNL DOI 10.1016/J.BBRC.2007.07.144 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, AMBER 7.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, ... AND KOLL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JSO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100240. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 80 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N], ANTIMICROBIAL REMARK 210 RESISTANCE PROTEIN, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N], ANTIMICROBIAL RESISTANCE REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 4 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 5 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 6 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 9 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 12 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 12 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 13 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 16 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 18 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 14 19.50 -142.24 REMARK 500 1 ASN A 15 -21.65 56.45 REMARK 500 1 ALA A 24 67.49 -68.12 REMARK 500 1 ASN A 57 -58.23 68.68 REMARK 500 1 ARG A 58 13.78 177.38 REMARK 500 1 THR A 87 79.97 57.22 REMARK 500 2 ASN A 15 3.41 55.18 REMARK 500 2 ALA A 24 73.45 -66.47 REMARK 500 2 ASN A 57 -76.07 68.38 REMARK 500 2 ARG A 58 2.09 -159.78 REMARK 500 3 ASP A 14 -5.66 -141.09 REMARK 500 3 ASN A 15 -17.61 69.93 REMARK 500 3 ALA A 24 73.91 -67.11 REMARK 500 3 ASN A 57 -63.56 70.94 REMARK 500 3 ARG A 58 -5.48 -170.50 REMARK 500 3 ALA A 84 29.11 -65.86 REMARK 500 3 LYS A 86 -115.16 -135.62 REMARK 500 4 LYS A 12 -30.84 -141.85 REMARK 500 4 ASN A 15 1.06 58.98 REMARK 500 4 ALA A 24 72.06 -66.17 REMARK 500 4 ASN A 57 -43.54 71.62 REMARK 500 4 ARG A 58 -10.49 152.48 REMARK 500 5 ASN A 11 8.07 -154.76 REMARK 500 5 ASN A 15 -6.41 62.16 REMARK 500 5 ALA A 24 71.71 -66.71 REMARK 500 5 ASN A 57 -45.07 71.16 REMARK 500 5 ARG A 58 13.59 149.50 REMARK 500 6 ASN A 15 -22.04 66.71 REMARK 500 6 ALA A 24 72.89 -65.47 REMARK 500 6 ASN A 57 -75.19 67.94 REMARK 500 6 ARG A 58 -3.08 -161.70 REMARK 500 7 ASN A 11 -53.91 -135.42 REMARK 500 7 LYS A 12 -30.69 52.43 REMARK 500 7 ASN A 15 -17.32 72.19 REMARK 500 7 ALA A 24 72.32 -65.77 REMARK 500 7 ASN A 57 -65.28 70.40 REMARK 500 7 ARG A 58 -3.27 -172.44 REMARK 500 8 ASP A 14 -14.41 -143.10 REMARK 500 8 ASN A 15 -14.70 68.90 REMARK 500 8 ALA A 24 74.04 -64.31 REMARK 500 8 GLN A 50 -167.30 -160.83 REMARK 500 8 ALA A 52 -45.97 60.14 REMARK 500 8 ASN A 57 -66.53 70.41 REMARK 500 8 ARG A 58 -2.43 -172.43 REMARK 500 9 ASN A 15 -9.00 65.98 REMARK 500 9 ALA A 24 72.70 -66.02 REMARK 500 9 GLN A 50 -166.48 -160.37 REMARK 500 9 ALA A 52 -44.95 58.64 REMARK 500 9 ASN A 57 -65.09 71.01 REMARK 500 9 ARG A 58 6.25 -174.98 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 12 GLN A 13 1 -145.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 16 0.07 SIDE CHAIN REMARK 500 6 ARG A 79 0.10 SIDE CHAIN REMARK 500 9 ARG A 16 0.08 SIDE CHAIN REMARK 500 10 ARG A 79 0.09 SIDE CHAIN REMARK 500 17 ARG A 79 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15371 RELATED DB: BMRB DBREF 2JSO A 1 88 UNP P37590 PMRD_ECOLI 1 88 SEQRES 1 A 88 MET GLU TRP LEU VAL LYS LYS SER CYS CYS ASN LYS GLN SEQRES 2 A 88 ASP ASN ARG HIS VAL LEU MET LEU CYS ASP ALA GLY GLY SEQRES 3 A 88 ALA ILE LYS MET ILE ALA GLU VAL LYS SER ASP PHE ALA SEQRES 4 A 88 VAL LYS VAL GLY ASP LEU LEU SER PRO LEU GLN ASN ALA SEQRES 5 A 88 LEU TYR CYS ILE ASN ARG GLU LYS LEU HIS THR VAL LYS SEQRES 6 A 88 VAL LEU SER ALA SER SER TYR SER PRO ASP GLU TRP GLU SEQRES 7 A 88 ARG GLN CYS LYS VAL ALA GLY LYS THR GLN HELIX 1 1 SER A 73 ALA A 84 1 12 SHEET 1 A 6 LEU A 45 LEU A 46 0 SHEET 2 A 6 TRP A 3 CYS A 9 -1 N TRP A 3 O LEU A 46 SHEET 3 A 6 HIS A 17 ASP A 23 -1 O CYS A 22 N LEU A 4 SHEET 4 A 6 MET A 30 SER A 36 -1 O VAL A 34 N HIS A 17 SHEET 5 A 6 GLU A 59 SER A 71 -1 O LEU A 67 N GLU A 33 SHEET 6 A 6 LEU A 53 ILE A 56 -1 O ILE A 56 N GLU A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1