HEADER IMMUNE SYSTEM 16-JUL-07 2JSV TITLE DIPOLE TENSOR-BASED REFINEMENT FOR ATOMIC-RESOLUTION STRUCTURE TITLE 2 DETERMINATION OF A NANOCRYSTALLINE PROTEIN BY SOLID-STATE NMR TITLE 3 SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: 2-1 REPEAT; COMPND 5 SYNONYM: IGG-BINDING PROTEIN G; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. 'GROUP G'; SOURCE 3 ORGANISM_TAXID: 1320; SOURCE 4 GENE: SPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSNMR, GB1, TENSOR REFINEMENT, CELL WALL, IGG-BINDING PROTEIN, KEYWDS 2 PEPTIDOGLYCAN-ANCHOR, IMMUNE SYSTEM EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR W.FRANKS,B.J.WYLIE,H.L.FRERICKS,A.J.NIEUWKOOP,R.MAYRHOFER,G.J.SHAH, AUTHOR 2 D.T.GRAESSER,C.M.RIENSTRA REVDAT 4 29-MAY-24 2JSV 1 REMARK REVDAT 3 20-OCT-21 2JSV 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JSV 1 VERSN REVDAT 1 15-APR-08 2JSV 0 JRNL AUTH W.T.FRANKS,B.J.WYLIE,H.L.SCHMIDT,A.J.NIEUWKOOP, JRNL AUTH 2 R.M.MAYRHOFER,G.J.SHAH,D.T.GRAESSER,C.M.RIENSTRA JRNL TITL DIPOLE TENSOR-BASED ATOMIC-RESOLUTION STRUCTURE JRNL TITL 2 DETERMINATION OF A NANOCRYSTALLINE PROTEIN BY SOLID-STATE JRNL TITL 3 NMR JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 4621 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18344321 JRNL DOI 10.1073/PNAS.0712393105 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.16.0, X-PLOR NIH 2.16.0 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 50,000 STEPS AT 2500 K, DECREASED OVER REMARK 3 25,000 STEPS TO 1000 K, 1 FS STEP SIZE, 70,000 STEPS FROM 1000K REMARK 3 TO 300 K, 1 FS STEP SIZE REMARK 4 REMARK 4 2JSV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100247. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 281 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 14 MG/ML [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, (4R)-2-METYLPENTANE-2,4- REMARK 210 DIOL (50% V/V), ISOPROPYL REMARK 210 ALCOHOL (25% V/V), 25 MG/ML GB1 REMARK 210 IN 50 MM SODIUM PHOSPHATE REMARK 210 BUFFERED H2O; 14 MG/ML [U-99% REMARK 210 15N] PROTEIN, (4R)-2- REMARK 210 METYLPENTANE-2,4-DIOL (50% V/V), REMARK 210 ISOPROPYL ALCOHOL (25% V/V), 25 REMARK 210 MG/ML GB1 IN 50 MM SODIUM REMARK 210 PHOSPHATE BUFFERED H2O; 14 MG/ML REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 (4R)-2-METYLPENTANE-2,4-DIOL REMARK 210 (50% V/V), ISOPROPYL ALCOHOL (25% REMARK 210 V/V), 25 MG/ML GB1 IN 50 MM REMARK 210 SODIUM PHOSPHATE BUFFERED H2O; REMARK 210 14 MG/ML (1,3) 13C GLYCEROL, REMARK 210 U15N PROTEIN, (4R)-2- REMARK 210 METYLPENTANE-2,4-DIOL (50% V/V), REMARK 210 ISOPROPYL ALCOHOL (25% V/V), 25 REMARK 210 MG/ML GB1 IN 50 MM SODIUM REMARK 210 PHOSPHATE BUFFERED H2O; 14 MG/ML REMARK 210 2 13C GLYCEROL, UNIFORM 15N REMARK 210 PROTEIN, (4R)-2-METYLPENTANE-2,4- REMARK 210 DIOL (50% V/V), ISOPROPYL REMARK 210 ALCOHOL (25% V/V), 25 MG/ML GB1 REMARK 210 IN 50 MM SODIUM PHOSPHATE REMARK 210 BUFFERED H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CC 2D DARR MIXING; NN 2D PDSD REMARK 210 MIXING; HN-HN VEAN; HN-NCA-HA REMARK 210 VEAN; NCACX, NCOCX 3D; N(HH)C; REMARK 210 C(HH)C REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; INFINITY PLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.16.0, NMRPIPE, REMARK 210 SPARKY, PROCHECK REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 260 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE PRECIPITANT WAS PACKED WITH EXCESS MOTHER LIQUOR FOR REMARK 210 DATA ACQUISITION. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR X 49 HG1 THR X 51 1.40 REMARK 500 O ALA X 23 H GLU X 27 1.41 REMARK 500 H LEU X 7 O GLY X 14 1.43 REMARK 500 H GLU X 42 O THR X 55 1.45 REMARK 500 O GLN X 32 H ASP X 36 1.46 REMARK 500 O ALA X 26 H PHE X 30 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN X 8 -164.66 -128.21 REMARK 500 1 ASN X 37 53.10 -113.56 REMARK 500 1 LYS X 50 46.27 26.85 REMARK 500 2 ASN X 8 -164.08 -129.16 REMARK 500 2 ASN X 37 53.02 -118.25 REMARK 500 2 LYS X 50 44.76 34.69 REMARK 500 3 ASN X 8 -164.91 -126.72 REMARK 500 3 ASN X 37 54.07 -110.63 REMARK 500 3 LYS X 50 35.90 36.74 REMARK 500 4 ASN X 8 -163.98 -124.82 REMARK 500 4 ASN X 37 53.31 -110.98 REMARK 500 5 ASN X 8 -164.51 -124.84 REMARK 500 5 ASN X 37 52.98 -113.50 REMARK 500 5 LYS X 50 38.38 34.82 REMARK 500 6 ASN X 37 53.03 -114.29 REMARK 500 6 LYS X 50 43.29 34.84 REMARK 500 7 ASN X 37 53.35 -111.32 REMARK 500 8 LYS X 10 -77.93 -66.76 REMARK 500 8 ASN X 37 52.21 -112.21 REMARK 500 8 LYS X 50 48.34 37.65 REMARK 500 9 ASN X 8 -163.97 -125.12 REMARK 500 9 LYS X 10 -81.24 -61.77 REMARK 500 9 ASN X 37 52.82 -119.47 REMARK 500 9 LYS X 50 49.80 26.12 REMARK 500 10 ASN X 37 52.92 -112.41 REMARK 500 10 LYS X 50 46.68 26.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15156 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS REMARK 900 RELATED ID: 2GI9 RELATED DB: PDB REMARK 900 COMPARISON X-RAY STRUCTURE DBREF 2JSV X 2 56 UNP P19909 SPG2_STRSG 303 357 SEQADV 2JSV MET X 1 UNP P19909 INITIATING METHIONINE SEQADV 2JSV GLN X 2 UNP P19909 THR 303 ENGINEERED MUTATION SEQRES 1 X 56 MET GLN TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 X 56 GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 X 56 GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 X 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 X 56 THR VAL THR GLU HELIX 1 1 ASP X 22 ASN X 37 1 16 SHEET 1 A 4 GLY X 14 GLU X 19 0 SHEET 2 A 4 GLN X 2 LEU X 7 -1 N LEU X 7 O GLY X 14 SHEET 3 A 4 THR X 51 THR X 55 1 O VAL X 54 N ILE X 6 SHEET 4 A 4 GLU X 42 ASP X 46 -1 N GLU X 42 O THR X 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1