HEADER GENE REGULATION 23-AUG-07 2JUF TITLE NMR SOLUTION STRUCTURE OF PARC CPH DOMAIN. NESG TARGET HR3443B/SGC- TITLE 2 TORONTO COMPND MOL_ID: 1; COMPND 2 MOLECULE: P53-ASSOCIATED PARKIN-LIKE CYTOPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CPH DOMAIN: RESIDUES 366-466; COMPND 5 SYNONYM: UBCH7-ASSOCIATED PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARC, H7AP1, KIAA0708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CPH DOMAIN, STRUCTURAL GENOMICS CONSORTIUM, SGC, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, NESG, ALTERNATIVE SPLICING, ATP-BINDING, COILED KEYWDS 3 COIL, CYTOPLASM, METAL-BINDING, NUCLEOTIDE-BINDING, UBL CONJUGATION, KEYWDS 4 UBL CONJUGATION PATHWAY, ZINC, ZINC-FINGER, PSI-2, PROTEIN STRUCTURE KEYWDS 5 INITIATIVE, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.KAUSTOV,J.C.C.LIAO,S.LEMAK,S.DUAN,R.MUHANDIRAM,M.KARRA, AUTHOR 2 S.H.SRISAILAM,M.SUNDSTROM,J.WEIGELT,A.M.EDWARDS,S.DHE-PAGANON, AUTHOR 3 C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC),NORTHEAST AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 20-OCT-21 2JUF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JUF 1 VERSN REVDAT 1 16-OCT-07 2JUF 0 JRNL AUTH L.KAUSTOV,J.C.C.LIAO,S.LEMAK,S.DUAN,R.MUHANDIRAM,M.KARRA, JRNL AUTH 2 S.H.SRISAILAM,M.SUNDSTROM,J.WEIGELT,A.M.EDWARDS, JRNL AUTH 3 S.DHE-PAGANON,C.H.ARROWSMITH JRNL TITL NMR SOLUTION STRUCTURE OF PARC CPH DOMAIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.110, CNS 1.1 REMARK 3 AUTHORS : GODDARD (SPARKY), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JUF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100303. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.25 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM TRIS, 250 MM SODIUM REMARK 210 CHLORIDE, 90 % H2O, 0.5 MM PMSF, REMARK 210 1 MM BENZAMIDINE, 10 % D2O, 55 REMARK 210 MM H2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 CC(CO)NH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNCO; 3D HBHA(CO)NH; HC(CO)NH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE 2.3 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 PRO A 78 REMARK 465 GLU A 79 REMARK 465 GLU A 80 REMARK 465 ALA A 81 REMARK 465 THR A 82 REMARK 465 GLU A 83 REMARK 465 ASP A 84 REMARK 465 LYS A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 ALA A 88 REMARK 465 ALA A 89 REMARK 465 VAL A 90 REMARK 465 GLU A 91 REMARK 465 LYS A 92 REMARK 465 GLY A 93 REMARK 465 ALA A 94 REMARK 465 GLY A 95 REMARK 465 ALA A 96 REMARK 465 THR A 97 REMARK 465 VAL A 98 REMARK 465 LEU A 99 REMARK 465 GLY A 100 REMARK 465 THR A 101 REMARK 465 ALA A 102 REMARK 465 PHE A 103 REMARK 465 PRO A 104 REMARK 465 SER A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 24 79.18 -59.59 REMARK 500 2 PRO A 24 80.30 -64.81 REMARK 500 3 PRO A 24 90.55 -63.03 REMARK 500 4 PRO A 24 82.19 -62.97 REMARK 500 5 PRO A 24 84.45 -66.01 REMARK 500 6 PRO A 24 90.54 -57.91 REMARK 500 7 PRO A 24 86.68 -65.56 REMARK 500 7 GLU A 36 -1.95 -140.84 REMARK 500 8 PRO A 24 84.83 -57.20 REMARK 500 9 PRO A 24 88.37 -53.12 REMARK 500 10 PRO A 24 84.62 -63.63 REMARK 500 11 PRO A 24 85.48 -61.89 REMARK 500 11 ARG A 27 122.89 146.08 REMARK 500 11 LEU A 76 35.94 -152.08 REMARK 500 12 PRO A 24 92.41 -68.20 REMARK 500 14 PRO A 24 87.85 -67.48 REMARK 500 15 PRO A 24 85.45 -50.47 REMARK 500 16 PRO A 24 85.01 -67.22 REMARK 500 17 PRO A 24 82.32 -60.83 REMARK 500 17 LEU A 76 -60.86 -97.56 REMARK 500 18 PRO A 24 89.97 -66.78 REMARK 500 19 PRO A 24 88.16 -62.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 12 ARG A 46 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR3443B RELATED DB: TARGETDB DBREF 2JUF A 5 105 UNP Q8IWT3 PARC_HUMAN 366 466 SEQADV 2JUF GLY A 1 UNP Q8IWT3 EXPRESSION TAG SEQADV 2JUF SER A 2 UNP Q8IWT3 EXPRESSION TAG SEQADV 2JUF HIS A 3 UNP Q8IWT3 EXPRESSION TAG SEQADV 2JUF MET A 4 UNP Q8IWT3 EXPRESSION TAG SEQADV 2JUF GLY A 12 UNP Q8IWT3 SER 373 ENGINEERED MUTATION SEQRES 1 A 105 GLY SER HIS MET ARG SER GLU PHE SER SER ARG GLY GLY SEQRES 2 A 105 TYR GLY GLU TYR VAL GLN GLN THR LEU GLN PRO GLY MET SEQRES 3 A 105 ARG VAL ARG MET LEU ASP ASP TYR GLU GLU ILE SER ALA SEQRES 4 A 105 GLY ASP GLU GLY GLU PHE ARG GLN SER ASN ASN GLY ILE SEQRES 5 A 105 PRO PRO VAL GLN VAL PHE TRP GLN SER THR GLY ARG THR SEQRES 6 A 105 TYR TRP VAL HIS TRP HIS MET LEU GLU ILE LEU GLY PRO SEQRES 7 A 105 GLU GLU ALA THR GLU ASP LYS ALA SER ALA ALA VAL GLU SEQRES 8 A 105 LYS GLY ALA GLY ALA THR VAL LEU GLY THR ALA PHE PRO SEQRES 9 A 105 SER HELIX 1 1 TYR A 14 LEU A 22 1 9 HELIX 2 2 HIS A 69 HIS A 71 5 3 SHEET 1 A 5 ARG A 64 VAL A 68 0 SHEET 2 A 5 VAL A 55 TRP A 59 -1 N VAL A 55 O VAL A 68 SHEET 3 A 5 GLU A 42 GLN A 47 -1 N GLU A 44 O PHE A 58 SHEET 4 A 5 ARG A 27 MET A 30 -1 N VAL A 28 O GLY A 43 SHEET 5 A 5 LEU A 73 GLU A 74 -1 O GLU A 74 N ARG A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1