HEADER METAL BINDING PROTEIN 12-SEP-07 2JV7 TITLE NMR SOLUTION STRUCTURE OF HISTOPLASMA CAPSULATUM CBP HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AJELLOMYCES CAPSULATUS; SOURCE 3 ORGANISM_COMMON: HISTOPLASMA CAPSULATUM; SOURCE 4 ORGANISM_TAXID: 5037; SOURCE 5 STRAIN: G186AR KEYWDS VIRULENCE FACTOR, CALCIUM BINDING PROTEIN, HOMODIMER, ALL ALPHA KEYWDS 2 HELICAL, GLYCOPROTEIN, SECRETED, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.R.BECK,G.T.DEKOSTER,D.P.CISTOLA,W.E.GOLDMAN REVDAT 5 16-MAR-22 2JV7 1 REMARK REVDAT 4 12-MAY-09 2JV7 1 JRNL SOURCE REVDAT 3 07-APR-09 2JV7 1 JRNL REVDAT 2 24-FEB-09 2JV7 1 VERSN REVDAT 1 23-SEP-08 2JV7 0 JRNL AUTH M.R.BECK,G.T.DEKOSTER,D.P.CISTOLA,W.E.GOLDMAN JRNL TITL NMR STRUCTURE OF A FUNGAL VIRULENCE FACTOR REVEALS JRNL TITL 2 STRUCTURAL HOMOLOGY WITH MAMMALIAN SAPOSIN B. JRNL REF MOL.MICROBIOL. V. 72 344 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19298372 JRNL DOI 10.1111/J.1365-2958.2009.06647.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.BECK,G.T.DEKOSTER,D.M.HAMBLY,M.L.GROSS,D.P.CISTOLA, REMARK 1 AUTH 2 W.E.GOLDMAN REMARK 1 TITL FUNCTIONAL INSIGHTS FROM NMR STRUCTURE OF FUNGAL VIRULENCE REMARK 1 TITL 2 FACTOR REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2001, CNS 1.1, HADDOCK 1.3 REMARK 3 AUTHORS : ACCELRYS (FELIX), BRUNGER, A.T. ET AL. (CNS), REMARK 3 BONVIN, A. (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA1.2 USED TO DETERMINE FIRST REMARK 3 GENERATION MONOMER STRUCTURE, HADDOCK USED FOR DOCKING MONOMERS, REMARK 3 THEN ARIA2.2(BETA) USED FOR HOMODIMER STRUCTURE WITH STARTING REMARK 3 STRUCTRE OF HOMODIMER FROM HADDOCK REMARK 4 REMARK 4 2JV7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100331. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] CBP, REMARK 210 5 % [U-99% 2H] D2O, 95 % H2O, REMARK 210 100 MM POTASSIUM CHLORIDE, 10 MM REMARK 210 [U-98% 2H] HEPES, 0.05 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 1 MM [U- REMARK 210 99% 15N] CBP, 5 % [U-99% 2H] D2O, REMARK 210 95 % H2O, 100 MM POTASSIUM REMARK 210 CHLORIDE, 10 MM [U-98% 2H] HEPES, REMARK 210 0.05 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 2 MM [U-99% 13C; U-99% 15N] REMARK 210 CBP, 100 % [U-99% 2H] D2O, 100 REMARK 210 MM POTASSIUM CHLORIDE, 10 MM [U- REMARK 210 98% 2H] HEPES, 0.05 % SODIUM REMARK 210 AZIDE, 100% D2O; 1 MM [U-99% 13C; REMARK 210 U-99% 15N] CBP, 5 % [U-99% 2H] REMARK 210 D2O, 95 % H2O, 100 MM POTASSIUM REMARK 210 CHLORIDE, 10 MM [U-98% 2H] HEPES, REMARK 210 0.05 % SODIUM AZIDE, 1 MM CBP, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HNCO; 3D CBCA(CO)CAHA; 3D HCCH- REMARK 210 TOCSY; 3D HCC(TOCSY)NNH; 3D REMARK 210 CC(TOCSY)NNH; 3D AROMATIC HC(C)H- REMARK 210 TOCSY; 2D AROMATIC 13C-HSQC; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDHDHE; 3D REMARK 210 1H-13C NOESY-ALIPH; 3D HNHA; 3D REMARK 210 1H-13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D 15N-15N NOESY; 3D 13C- REMARK 210 FILTERED, 12C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2001, CNS 1.1, ARIA 1.2, REMARK 210 ARIAV2.2 2.2BETA REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: EXPERIMENTS USED TO ASSIGN BACKBONE AND SIDECHAINS, REMARK 210 INCLUDING DISULFIDE BONDS (CH-NOESY), AND OBTAIN CONSTRAINTS FOR REMARK 210 3D STRUCTURE DETERMINATION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 27 H CYS B 28 1.25 REMARK 500 HD21 ASN A 27 H CYS A 28 1.26 REMARK 500 HD3 LYS A 74 H GLY A 75 1.34 REMARK 500 HD3 LYS B 74 H GLY B 75 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 27 -37.84 -160.58 REMARK 500 1 ALA A 31 -42.82 69.79 REMARK 500 1 SER A 38 2.86 -65.39 REMARK 500 1 SER A 40 121.77 142.39 REMARK 500 1 ALA A 42 -8.64 -57.62 REMARK 500 1 LEU A 51 106.18 107.94 REMARK 500 1 LEU A 53 55.09 94.63 REMARK 500 1 ASP A 54 98.46 14.36 REMARK 500 1 LEU A 57 -69.09 -97.31 REMARK 500 1 ALA A 65 -101.76 -162.93 REMARK 500 1 SER A 68 109.13 77.97 REMARK 500 1 ALA A 69 45.24 167.54 REMARK 500 1 LYS A 74 -128.34 -66.70 REMARK 500 1 CYS A 76 -62.52 -163.49 REMARK 500 1 ASN B 27 -37.84 -160.53 REMARK 500 1 ALA B 31 -42.82 69.79 REMARK 500 1 SER B 38 2.85 -65.39 REMARK 500 1 SER B 40 121.82 142.39 REMARK 500 1 ALA B 42 -8.60 -57.69 REMARK 500 1 LEU B 51 106.18 107.92 REMARK 500 1 LEU B 53 55.09 94.57 REMARK 500 1 ASP B 54 98.51 14.35 REMARK 500 1 LEU B 57 -69.07 -97.29 REMARK 500 1 ALA B 65 -101.66 -162.85 REMARK 500 1 SER B 68 109.04 78.04 REMARK 500 1 ALA B 69 45.19 167.54 REMARK 500 1 LYS B 74 -128.43 -66.78 REMARK 500 1 CYS B 76 -62.45 -163.50 REMARK 500 2 GLN A 2 60.93 -154.33 REMARK 500 2 ASN A 27 -36.43 -159.43 REMARK 500 2 ALA A 31 -43.75 69.83 REMARK 500 2 SER A 38 0.85 -67.20 REMARK 500 2 SER A 40 127.54 91.97 REMARK 500 2 ALA A 42 -8.76 -58.17 REMARK 500 2 LEU A 51 105.69 106.27 REMARK 500 2 LEU A 53 53.74 95.62 REMARK 500 2 ASP A 54 97.88 15.18 REMARK 500 2 LEU A 57 -67.91 -97.26 REMARK 500 2 ALA A 65 -100.29 -163.77 REMARK 500 2 SER A 68 108.08 76.99 REMARK 500 2 ALA A 69 45.92 167.61 REMARK 500 2 LYS A 74 -127.02 -66.73 REMARK 500 2 CYS A 76 -63.08 -163.29 REMARK 500 2 GLN B 2 60.78 -154.26 REMARK 500 2 ASN B 27 -36.40 -159.48 REMARK 500 2 ALA B 31 -43.77 69.81 REMARK 500 2 SER B 38 0.87 -67.26 REMARK 500 2 SER B 40 127.67 92.03 REMARK 500 2 ALA B 42 -8.86 -58.16 REMARK 500 2 LEU B 51 105.79 106.27 REMARK 500 REMARK 500 THIS ENTRY HAS 576 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 ARG A 17 0.08 SIDE CHAIN REMARK 500 8 ARG B 17 0.08 SIDE CHAIN REMARK 500 10 ARG A 17 0.08 SIDE CHAIN REMARK 500 10 ARG B 17 0.08 SIDE CHAIN REMARK 500 14 ARG A 17 0.09 SIDE CHAIN REMARK 500 14 ARG B 17 0.09 SIDE CHAIN REMARK 500 16 ARG A 17 0.08 SIDE CHAIN REMARK 500 16 ARG B 17 0.08 SIDE CHAIN REMARK 500 17 ARG A 17 0.08 SIDE CHAIN REMARK 500 17 ARG B 17 0.08 SIDE CHAIN REMARK 500 19 ARG A 17 0.07 SIDE CHAIN REMARK 500 19 ARG B 17 0.07 SIDE CHAIN REMARK 500 20 ARG A 17 0.07 SIDE CHAIN REMARK 500 20 ARG B 17 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15404 RELATED DB: BMRB DBREF 2JV7 A 1 78 UNP O42720 CBP1_AJECA 33 110 DBREF 2JV7 B 1 78 UNP O42720 CBP1_AJECA 33 110 SEQRES 1 A 78 ASP GLN PRO SER VAL GLY ASP ALA PHE ASP LYS TYR ASN SEQRES 2 A 78 GLU ALA VAL ARG VAL PHE THR GLN LEU SER SER ALA ALA SEQRES 3 A 78 ASN CYS ASP TRP ALA ALA CYS LEU SER SER LEU SER ALA SEQRES 4 A 78 SER SER ALA ALA CYS ILE ALA ALA VAL GLY GLU LEU GLY SEQRES 5 A 78 LEU ASP VAL PRO LEU ASP LEU ALA CYS ALA ALA THR ALA SEQRES 6 A 78 THR SER SER ALA THR GLU ALA CYS LYS GLY CYS LEU TRP SEQRES 1 B 78 ASP GLN PRO SER VAL GLY ASP ALA PHE ASP LYS TYR ASN SEQRES 2 B 78 GLU ALA VAL ARG VAL PHE THR GLN LEU SER SER ALA ALA SEQRES 3 B 78 ASN CYS ASP TRP ALA ALA CYS LEU SER SER LEU SER ALA SEQRES 4 B 78 SER SER ALA ALA CYS ILE ALA ALA VAL GLY GLU LEU GLY SEQRES 5 B 78 LEU ASP VAL PRO LEU ASP LEU ALA CYS ALA ALA THR ALA SEQRES 6 B 78 THR SER SER ALA THR GLU ALA CYS LYS GLY CYS LEU TRP HELIX 1 1 SER A 4 ASN A 27 1 24 HELIX 2 2 ALA A 31 SER A 38 1 8 HELIX 3 3 SER A 41 GLU A 50 1 10 HELIX 4 4 LEU A 57 THR A 64 1 8 HELIX 5 5 SER B 4 ASN B 27 1 24 HELIX 6 6 ALA B 31 SER B 38 1 8 HELIX 7 7 SER B 41 GLU B 50 1 10 HELIX 8 8 LEU B 57 THR B 64 1 8 SSBOND 1 CYS A 28 CYS A 76 1555 1555 2.03 SSBOND 2 CYS A 33 CYS A 73 1555 1555 2.03 SSBOND 3 CYS A 44 CYS A 61 1555 1555 2.04 SSBOND 4 CYS B 28 CYS B 76 1555 1555 2.03 SSBOND 5 CYS B 33 CYS B 73 1555 1555 2.03 SSBOND 6 CYS B 44 CYS B 61 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1