HEADER HYDROLASE 14-SEP-07 2JVA TITLE NMR SOLUTION STRUCTURE OF PEPTIDYL-TRNA HYDROLASE DOMAIN PROTEIN FROM TITLE 2 PSEUDOMONAS SYRINGAE PV. TOMATO. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET PSR211 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-TRNA HYDROLASE DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-100; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_TAXID: 223283; SOURCE 4 STRAIN: DC3000; SOURCE 5 GENE: PSPTO_1818; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GFT NMR, HYDROLASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.SINGARAPU,D.SUKUMARAN,D.PARISH,A.ELETSKY,Q.ZHANG,L.ZHAO,M.JIANG, AUTHOR 2 M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,Y.J.HUANG,T.B.ACTON, AUTHOR 3 B.ROST,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG) REVDAT 6 14-JUN-23 2JVA 1 REMARK REVDAT 5 19-FEB-20 2JVA 1 REMARK SEQADV REVDAT 4 24-OCT-12 2JVA 1 JRNL REVDAT 3 13-JUL-11 2JVA 1 VERSN REVDAT 2 24-FEB-09 2JVA 1 VERSN REVDAT 1 02-OCT-07 2JVA 0 JRNL AUTH K.K.SINGARAPU,R.XIAO,T.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 2 T.SZYPERSKI JRNL TITL NMR STRUCTURE OF THE PEPTIDYL-TRNA HYDROLASE DOMAIN FROM JRNL TITL 2 PSEUDOMONAS SYRINGAE EXPANDS THE STRUCTURAL COVERAGE OF THE JRNL TITL 3 HYDROLYSIS DOMAINS OF CLASS 1 PEPTIDE CHAIN RELEASE FACTORS. JRNL REF PROTEINS V. 71 1027 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18247350 JRNL DOI 10.1002/PROT.21947 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JVA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100334. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.28 MM [U-100% 13C; U-100% 15N] REMARK 210 PEPTIDYL-TRNA HYDROLASE DOMAIN REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4,3D GFT CABCACONHN; 4,3D GFT REMARK 210 HNNCABCA; 4,3D GFT HCCH COSY; 3D REMARK 210 HCCH-COSY; 4,3D GFT HABCABCONHN; REMARK 210 3D SIM NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, TALOS, DYANA, REMARK 210 CYANA, AUTOASSIGN, AUTOSTRUCTURE, REMARK 210 MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 28 132.89 69.63 REMARK 500 1 ASN A 29 129.47 74.46 REMARK 500 1 VAL A 30 86.47 52.71 REMARK 500 1 HIS A 104 -157.20 63.97 REMARK 500 1 HIS A 105 -34.62 -161.27 REMARK 500 1 HIS A 107 128.71 -174.11 REMARK 500 2 ILE A 4 -65.05 -95.75 REMARK 500 2 GLN A 28 112.40 70.53 REMARK 500 2 ASN A 29 -16.44 74.70 REMARK 500 2 SER A 35 -72.33 -67.17 REMARK 500 2 ALA A 36 82.47 49.34 REMARK 500 2 HIS A 107 -90.23 66.42 REMARK 500 3 ALA A 22 -167.62 -112.84 REMARK 500 3 ASN A 29 146.14 68.21 REMARK 500 3 GLU A 102 -81.04 -112.22 REMARK 500 3 HIS A 103 23.42 -147.16 REMARK 500 4 ASN A 31 45.36 -85.06 REMARK 500 4 GLU A 102 -58.33 -160.71 REMARK 500 4 HIS A 107 -4.49 73.41 REMARK 500 5 ALA A 25 139.98 70.74 REMARK 500 5 SER A 35 30.78 -88.39 REMARK 500 5 SER A 47 34.93 -76.94 REMARK 500 5 GLN A 75 20.18 -140.14 REMARK 500 5 GLU A 102 -148.59 -95.26 REMARK 500 5 HIS A 103 -164.19 66.85 REMARK 500 5 HIS A 105 -96.62 60.36 REMARK 500 6 GLN A 28 99.90 66.80 REMARK 500 6 GLN A 76 -64.19 -140.37 REMARK 500 6 HIS A 103 -162.91 57.45 REMARK 500 6 HIS A 106 -42.33 77.69 REMARK 500 7 ASN A 29 -16.11 72.87 REMARK 500 7 GLN A 75 27.36 -142.04 REMARK 500 7 HIS A 103 -45.94 -156.53 REMARK 500 7 HIS A 104 -122.88 55.55 REMARK 500 7 HIS A 105 135.78 -174.21 REMARK 500 8 ALA A 36 85.28 47.86 REMARK 500 8 HIS A 103 -41.97 77.35 REMARK 500 8 HIS A 104 100.22 70.12 REMARK 500 9 ASN A 29 -15.35 70.43 REMARK 500 9 HIS A 106 94.45 65.27 REMARK 500 10 SER A 34 167.68 64.00 REMARK 500 10 ALA A 58 45.30 -102.80 REMARK 500 10 HIS A 105 130.46 -176.16 REMARK 500 10 HIS A 107 -78.98 69.12 REMARK 500 11 ILE A 4 -65.94 -94.34 REMARK 500 11 ASN A 29 91.91 57.84 REMARK 500 11 GLN A 75 87.23 -153.10 REMARK 500 11 GLN A 76 -42.42 -139.50 REMARK 500 11 HIS A 105 -69.12 68.12 REMARK 500 11 HIS A 106 -101.81 178.02 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PSR211 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15471 RELATED DB: BMRB DBREF 2JVA A 1 100 UNP Q885L4 Q885L4_PSESM 1 100 SEQADV 2JVA LEU A 101 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA GLU A 102 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA HIS A 103 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA HIS A 104 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA HIS A 105 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA HIS A 106 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA HIS A 107 UNP Q885L4 EXPRESSION TAG SEQADV 2JVA HIS A 108 UNP Q885L4 EXPRESSION TAG SEQRES 1 A 108 MET LEU VAL ILE SER ASN ASN VAL HIS LEU PRO ASP ALA SEQRES 2 A 108 GLU ILE GLU LEU THR ALA ILE ARG ALA GLN GLY ALA GLY SEQRES 3 A 108 GLY GLN ASN VAL ASN LYS VAL SER SER ALA MET HIS LEU SEQRES 4 A 108 ARG PHE ASP ILE ASN ALA SER SER LEU PRO PRO PHE TYR SEQRES 5 A 108 LYS GLU ARG LEU LEU ALA LEU ASN ASP SER ARG ILE THR SEQRES 6 A 108 SER ASP GLY VAL ILE VAL LEU LYS ALA GLN GLN TYR ARG SEQRES 7 A 108 THR GLN GLU GLN ASN ARG ALA ASP ALA LEU LEU ARG LEU SEQRES 8 A 108 SER GLU LEU ILE VAL ASN ALA ALA LYS LEU GLU HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS HELIX 1 1 PRO A 11 ALA A 13 5 3 HELIX 2 2 PRO A 49 ALA A 58 1 10 HELIX 3 3 THR A 79 LEU A 101 1 23 SHEET 1 A 2 LEU A 2 VAL A 3 0 SHEET 2 A 2 HIS A 9 LEU A 10 -1 O LEU A 10 N LEU A 2 SHEET 1 B 3 ILE A 15 ALA A 19 0 SHEET 2 B 3 MET A 37 ASP A 42 -1 O HIS A 38 N THR A 18 SHEET 3 B 3 VAL A 69 ALA A 74 -1 O ALA A 74 N MET A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1